Nucleotide Global Alignment
Description
- Query:
- TRCN0000473640
- Subject:
- XR_001783718.1
- Aligned Length:
- 3791
- Identities:
- 1463
- Gaps:
- 2229
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ATCTTGACCAGGGGGGTAAGCTCTTTGAGGATGAAGAATTTGTAAACGAGGTCTAGGATGCAGCTATAAAGTCT 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 TTTTCTCTAGAGCTGAGAGGGCGAAGGGTGCCCGGGCCGGGCCTGGGATTGGTCCTTTGTGGTAATAATGCAGC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 TTGAGGTTGGAAGGAAGAGTGGAAGCAGCCTGAGAGCAGCAGGGTTGCAGTCCGGGCTAGCCTGAGGCACACAC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GGTGCAGGCTGCAGGCTGTCCCACTCACACCGCCCACGGAAGAGAAAGAACCCAGGTCAGCCAGCCACTGCAGC 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 GGGCTCGTCTCCGAGGGCGGGAGGCAGTGCGCGCGCGGGCGGGCGGGCGGGCAAGCGGGCGGAGGCAGCCAACG 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 GCGGAGGCGCCCACTCCCCCGGTCCCTGTGCCCCGCCGCTCGTCTCCCGCCGCCGCCGGGCGCCCGCGCGCTCG 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 GCTCTTTCCGCCGCCGCGCGCTGCCCCGTGCGCTCCGGCACCTTCGGCAATTTCCGTCGGGCCCTGGCCGCCAT 518
Query 1 ------------------------------------------------------------------------AT 2
||
Sbjct 519 TTTCTCGCCGCTTGTGTGGCTCGCTGGCTGCGTGGCTCGGTTCTTGGGAGCGAAGCTTTGTCCGGTTCGGCAAT 592
Query 3 GGACGGAATCGTCACTGAGGTTGCAGTTGGCGTGAAGAGAGGATCTGACGAACTACTCTCAGGCAGTGTTCTCA 76
|||||||||.||||||||||||||.|||||.||||||||||||||||||||.||||||||||||||||||||||
Sbjct 593 GGACGGAATTGTCACTGAGGTTGCTGTTGGTGTGAAGAGAGGATCTGACGAGCTACTCTCAGGCAGTGTTCTCA 666
Query 77 GTAGTCCGAACTCTAATATGAGCAGCATGGTAGTTACAGCCAATGGTAATGATAGTAAAAAATTTAAAGGAGAA 150
|.||.||.||||||||||||||..|||||||||||||||||||.|||||.||||||||.|||||||||||||||
Sbjct 667 GCAGCCCCAACTCTAATATGAGTGGCATGGTAGTTACAGCCAACGGTAACGATAGTAAGAAATTTAAAGGAGAA 740
Query 151 GATAAAATGGATGGTGCTCCTTCTCGTGTACTTCATATTCGAAAATTACCTGGGGAAGTAACAGAAACTGAAGT 224
||||||||||||||.|||||.||||||||||||||.||||||||.||||||||.|||||.||.|||||.|||||
Sbjct 741 GATAAAATGGATGGGGCTCCCTCTCGTGTACTTCACATTCGAAAGTTACCTGGTGAAGTGACTGAAACAGAAGT 814
Query 225 TATTGCTTTAGGCTTACCTTTTGGTAAGGTGACCAACATCCTTATGCTGAAAGGAAAAAATCAGGCATTTTTGG 298
||||||||||||.||||||||||||||||||||.||||||||||||||||||||||||||.|||||||||||||
Sbjct 815 TATTGCTTTAGGTTTACCTTTTGGTAAGGTGACTAACATCCTTATGCTGAAAGGAAAAAACCAGGCATTTTTGG 888
Query 299 AACTAGCAACCGAGGAAGCAGCTATTACTATGGTTAATTACTATTCTGCTGTGACACCTCATCTTCGTAACCAA 372
||||.|||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 AACTGGCAACAGAGGAAGCAGCTATTACTATGGTTAATTACTATTCTGCTGTGACACCTCATCTTCGTAACCAA 962
Query 373 CCAATATATATCCAGTACTCGAATCACAAAGAACTAAAGACAGATAATACATTAAACCAACGTGCTCAGGCAGT 446
|||||.||.|||||||||||.||||||||||||||||||||||||||||||||||||||||||||.||.|.|||
Sbjct 963 CCAATTTACATCCAGTACTCCAATCACAAAGAACTAAAGACAGATAATACATTAAACCAACGTGCGCAAGTAGT 1036
Query 447 TCTTCAAGCTGTGACAGCTGTCCAGACAGCAAATACTCCTCTTAGTGGCACCACAGTTAGCGAGAGTGCAGTGA 520
||||||||||||||||||.|||||||||||||||||.||||||||||||||||||||.||.||||||||.||||
Sbjct 1037 TCTTCAAGCTGTGACAGCGGTCCAGACAGCAAATACACCTCTTAGTGGCACCACAGTCAGTGAGAGTGCGGTGA 1110
Query 521 CTCCAGCCCAGAGTCCAGTACTTAGAATAATTATTGACAACATGTACTACCCTGTAACACTTGATGTTCTTCAC 594
||||||||||||||||||||||||||||||||||||||||.||||||||||||||||||||||||||.||||||
Sbjct 1111 CTCCAGCCCAGAGTCCAGTACTTAGAATAATTATTGACAATATGTACTACCCTGTAACACTTGATGTCCTTCAC 1184
Query 595 CAAATATTTTCTAAGTTTGGTGCTGTATTGAAGATAATCACATTTACAAAAAATAACCAGTTTCAAGCTTTGCT 668
|||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||.||||||||
Sbjct 1185 CAAATATTTTCTAAGTTTGGTGCTGTATTGAAGATAATCACATTTACAAAAAACAACCAGTTTCAGGCTTTGCT 1258
Query 669 CCAGTATGGTGATCCAGTAAATGCTCAACAAGCAAAACTAGCCCTAGATGGTCAGAATATTTATAATGCCTGCT 742
|||||||||||||||.|||||.|||||||||||.||.|||||||||||||||||.||||||||||||||.||||
Sbjct 1259 CCAGTATGGTGATCCGGTAAACGCTCAACAAGCCAAGCTAGCCCTAGATGGTCAAAATATTTATAATGCTTGCT 1332
Query 743 GTACCCTAAGGATTGATTTTTCCAAACTTGTGAATTTGAATGTAAAATACAACAATGATAAAAGTAGGGATTAT 816
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333 GTACCCTAAGGATTGATTTTTCCAAACTTGTGAATTTGAATGTAAAATACAACAATGATAAAAGTAGGGATTAT 1406
Query 817 ACTCGACCTGATCTTCCATCTGGGGATGGACAACCTGCATTGGACCCAGCTATTGCTGCAGCATTTGCCAAGGA 890
||||||||||||||.||||||||.||.||.||.|||||.||.||||||||.|||||||||||||||||||||||
Sbjct 1407 ACTCGACCTGATCTGCCATCTGGAGACGGCCAGCCTGCGTTAGACCCAGCCATTGCTGCAGCATTTGCCAAGGA 1480
Query 891 GACATCCCT-------CTT--------AGCTGTTCCAGGAGCTCTGAGTCCTTTGGCCATTCCAAATGCTGCTG 949
||||||||| ||| ||||||||||||.|||||.|||||||||||.||||||||||||||||
Sbjct 1481 GACATCCCTACTAGGGCTTCCTGTTGCAGCTGTTCCAGGGGCTCTCAGTCCTTTGGCTATTCCAAATGCTGCTG 1554
Query 950 CAGCAGCTGCTGCAGCTGCTGCTGGCCGAGTGGGTATGCCTGGAGTCTCAGCTGGTGGCAATACAGTCCTGTTG 1023
|||||||||||||.|||||.||||||||||||||.|||||||||||||||||||||||||||||||||||||||
Sbjct 1555 CAGCAGCTGCTGCCGCTGCCGCTGGCCGAGTGGGCATGCCTGGAGTCTCAGCTGGTGGCAATACAGTCCTGTTG 1628
Query 1024 GTTAGCAATTTAAATGAAGAGATGGTTACGCCCCAAAGTCTGTTTACCCTCTTCGGTGTTTATGGAGATGTGCA 1097
|||||||||||||||||||| ||||||||||||||||||||
Sbjct 1629 GTTAGCAATTTAAATGAAGA----------------------------------GGTGTTTATGGAGATGTGCA 1668
Query 1098 GCGTGTGAAGATTTTATACAATAAGAAAGACAGCGCTCTAATACAGATGGCTGATGGAAACCAATCACAACTTG 1171
|||.|||||||||.|.|||||||||||||||||.|||||.|||||||||||||||||.|||||.||.||.||.|
Sbjct 1669 GCGCGTGAAGATTCTGTACAATAAGAAAGACAGTGCTCTGATACAGATGGCTGATGGGAACCAGTCCCAGCTCG 1742
Query 1172 CCATGAATCATCTTAATGGACAGAAAATGTATGGAAAAATTATTCGTGTTACTCTGTCTAAACATCAGACTGTA 1245
|||||||||||||||||||.|||||.|||||||||||||||||||||||||||||.|||||||||||||||||.
Sbjct 1743 CCATGAATCATCTTAATGGGCAGAAGATGTATGGAAAAATTATTCGTGTTACTCTCTCTAAACATCAGACTGTG 1816
Query 1246 CAGCTACCTCGAGAGGGACTTGATGATCAAGGGCTAACAAAAGATTTTGGTAATTCCCCATTGCATCGTTTTAA 1319
||.|||||||||||||||||||||||||||||||||||||||||||||||.|||||.|||.||||.||||||||
Sbjct 1817 CAACTACCTCGAGAGGGACTTGATGATCAAGGGCTAACAAAAGATTTTGGGAATTCACCACTGCACCGTTTTAA 1890
Query 1320 GAAACCTGGATCCAAAAATTTTCAAAACATTTTTCCTCCTTCTGCCACCCTTCACCTATCTAATATCCCTCCAT 1393
.|||||.|||||||||||.|||||.||||||||.|||||||||||.|||||||||||.|||||.|||||.||.|
Sbjct 1891 AAAACCGGGATCCAAAAACTTTCAGAACATTTTCCCTCCTTCTGCTACCCTTCACCTGTCTAACATCCCCCCTT 1964
Query 1394 CAGTAGCAGAAGAGGATCTACGAACACTGTTCGCTAACACTGGGGGCACTGTGAAAGCATTTAAGTTTTTTCAA 1467
|.|||||||||||||||||.|||||.|||||.||.|||||.|||||||||||||||||||||||||||||||||
Sbjct 1965 CTGTAGCAGAAGAGGATCTGCGAACTCTGTTTGCCAACACCGGGGGCACTGTGAAAGCATTTAAGTTTTTTCAA 2038
Query 1468 AGAGATCACAAAATGGCTCTTCTTCAGATGGCAACAGTGGAAGAAGCTATTCAGGCCTTGATTGATCTTCATAA 1541
|||||||||||||||||||||||||||||||||||||||||.||||||||||||||.|||||||||||||||||
Sbjct 2039 AGAGATCACAAAATGGCTCTTCTTCAGATGGCAACAGTGGAGGAAGCTATTCAGGCTTTGATTGATCTTCATAA 2112
Query 1542 TTATAACCTTGGAGAAAACCATCATCTGAGAGTGTCTTTCTCAAAGTCAACAATT------------------- 1596
||||||||||||||||||||||||||||||||||||||||||.|||||||||||.
Sbjct 2113 TTATAACCTTGGAGAAAACCATCATCTGAGAGTGTCTTTCTCCAAGTCAACAATCTAAGCACGGGAGATGAAGA 2186
Query 1597 -------------------------------------------------------------------------- 1596
Sbjct 2187 TGGCGGGCAGATCCCATTGTTGGTGTCATCACCTATTGACTGTTCAGAAAAGTGGGGACCAGAGTTTGATTTTT 2260
Query 1597 -------------------------------------------------------------------------- 1596
Sbjct 2261 TTCATGCTGTTATCATTCCTTGGTTATAAAATGAAATGGCATATGTAAAGGCAGAGTTGCTAACTGCTGTGTTT 2334
Query 1597 -------------------------------------------------------------------------- 1596
Sbjct 2335 CATCTGTTCAATAGGGAAGCCATTTTTGTCTGTTTAAATTTTTAGTTTAATTTTGCTTTTTTTTTTTTTTCCAA 2408
Query 1597 -------------------------------------------------------------------------- 1596
Sbjct 2409 CTTAGTTGACATACGTGCCTTACAAAGGAAAACTAGTGTTGCTATTCTGCATTTACTAGGAAAAAGGAATTGGT 2482
Query 1597 -------------------------------------------------------------------------- 1596
Sbjct 2483 TGTTTAGGGCACATCGTTATGTGGGAATTAAAATATGTTTGGGCAGGGGTGTGTCAAAAGGTTAAGTTTTTATT 2556
Query 1597 -------------------------------------------------------------------------- 1596
Sbjct 2557 TCTCCTGCTTGGAACTTTCTTTGAATTATTGGCTTATCACATTTCTTTCTATTTAATCTAATAAGATACTTGAT 2630
Query 1597 -------------------------------------------------------------------------- 1596
Sbjct 2631 ACTGAGAGTATAAAACAGCATTTTTAGTTTTTACTATCTTAGGCTTTATTGCTTTTGAAAACATTGGCCTTTTG 2704
Query 1597 -------------------------------------------------------------------------- 1596
Sbjct 2705 TATCTCACAAATCTGGTCTAGATTCAGTTATGAATGTAGGCATTAGTTAAAATTAACAAGATGCAGAGTATTAA 2778
Query 1597 -------------------------------------------------------------------------- 1596
Sbjct 2779 TTTCTTAAGACAAGTGATTTCTGTAAGTTTGAGCCCTATGTGGAAAGCATTGTGGAACCTTAACCTTTTTGTAC 2852
Query 1597 -------------------------------------------------------------------------- 1596
Sbjct 2853 ACACTCTTGTGGGACGTGTCATATAAATGTCAGCACTAAGTAATGTCTTGTTTGTGGCTGAATATTTTTCGTAG 2926
Query 1597 -------------------------------------------------------------------------- 1596
Sbjct 2927 ATGTTTTTGAAGTTGACATGACTTACGTGCATTTAAATATATATTGCCATCCTTAGTTTGTAATTAAGATTTGG 3000
Query 1597 -------------------------------------------------------------------------- 1596
Sbjct 3001 AAAATGGTTGTGGATTTCTGAGCATGTGCAGACTGGTCTAGCTAGTTCAGGAACTGGTGCATGTATTTTTCAAA 3074
Query 1597 -------------------------------------------------------------------------- 1596
Sbjct 3075 GACAAAGAAAGTGTACTGCGAAAACTTGCAGGAAGATTAATTTTGTGGCAGTTTTCTAAAACTGACAACCAGGT 3148
Query 1597 -------------------------------------------------------------------------- 1596
Sbjct 3149 GGGACCAAAGTTTATGTGCCTTTAGTCTTAATTTACCTTGCATTGTAATATTCAGTTTTAATAAATCTTCAAAA 3222
Query 1597 -------------------------------------------------------------------------- 1596
Sbjct 3223 TATTTTGTATTTAGGAATAGATCTGACTTTAATAAAAACATGGCTCAGAATCTACAGGTCAAATTTATTTGAAC 3296
Query 1597 -------------------------------------------------------------------------- 1596
Sbjct 3297 AGTTCTTGTCAATCTGAATTGTTGATTCTGTTAAATGACCAATACTTTTTGAAATTGATGTACTTAGTTTCAAG 3370
Query 1597 -------------------------------------------------------------------------- 1596
Sbjct 3371 ATTCATAGATTCTGTTATCTATGTAGACAGAATGGTCATGTATATTTTCTATTAGTTGAGTTTTTACATCTTTA 3444
Query 1597 -------------------------------------------------------------------------- 1596
Sbjct 3445 GAAATGTAAAATTCAGTATAGTTTGAAAGCGGCACAATTAAAAATTAATTTTCTAACAAAGTTGGGAGGTTTGA 3518
Query 1597 -------------------------------------------------------------------------- 1596
Sbjct 3519 TGGTTGTTTAATTTCACTTTGTGTGTACTCTGCTTACCTCTGTAGCATGCTCAATAAACACTTCTGTAGCTCTG 3592
Query 1597 -------------------------------------------------------------------------- 1596
Sbjct 3593 TATTCACCTTTTCTGTCTTTCTCTGCTGCCTTTTCTCTCTCTCCTTTGTTTTCACTCCACTGTGCTTCTGAGTT 3666
Query 1597 -------------------------------------------------------------------------- 1596
Sbjct 3667 CATGTTTACTCTGCCAGGGTGGGAAAGGAGTAATACTATCACAATCCTATGGCTTTATACCATAAATAAATCCA 3740
Query 1597 ----------------- 1596
Sbjct 3741 GATGCTGTGAAAATGCA 3757
