Nucleotide Global Alignment

Description

Query:
TRCN0000473796
Subject:
XR_001749542.1
Aligned Length:
2286
Identities:
1114
Gaps:
1167

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GCAGGGTGGGGGAAAGGGATGGAGTTTCGGCCTGGGGCGGCGGGGGCGGCCCAGAAAAGGCCTAGCGTCCTGGG  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  CTGTGTGGGTGTAGCGTCCAGGGCGCGTCGGTCTCTATGGCAACGCTCCACACGCGGAGGTCGGGTACGGTTAT  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  CTGTGGCCACAAAGAAAGTTATTTGTCTCTGTCTTGGCAAGGCTGGGAGGAAAGTTTTAGCTAAGAAACTCAGC  222

Query    1  ------------ATGGATAAGTACGATGTGATTAAGGCCATCGGGCAAGGTGCCTTCGGGAAAGCATACTTAGC  62
                        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  CCATTGGAGACCATGGATAAGTACGATGTGATTAAGGCCATCGGGCAAGGTGCCTTCGGGAAAGCATACTTAGC  296

Query   63  TAAAGGGAAATCAGATAGCAAGCACTGTGTCATAAAAGAGATCAATTTTGAAAAGATGCCCATACAAGAAAAAG  136
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  TAAAGGGAAATCAGATAGCAAGCACTGTGTCATAAAAGAGATCAATTTTGAAAAGATGCCCATACAAGAAAAAG  370

Query  137  AAGCTTCAAAGAAAGAAGTGATTCTTCTGGAAAAGATGAAACATCCCAACATTGTAGCCTTCTTCAATTCATTT  210
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  AAGCTTCAAAGAAAGAAGTGATTCTTCTGGAAAAGATGAAACATCCCAACATTGTAGCCTTCTTCAATTCATTT  444

Query  211  CAAGAGAATGGCAGGCTGTTTATTGTAATGGAATATTGTGATGGAGGGGATCTCATGAAAAGGATCAATAGACA  284
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  CAAGAGAATGGCAGGCTGTTTATTGTAATGGAATATTGTGATGGAGGGGATCTCATGAAAAGGATCAATAGACA  518

Query  285  ACGGGGTGTGTTATTTAGTGAAGATCAGATCCTCGGTTGGTTTGTACAGATTTCTCTAGGACTAAAACATATTC  358
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  ACGGGGTGTGTTATTTAGTGAAGATCAGATCCTCGGTTGGTTTGTACAGATTTCTCTAGGACTAAAACATATTC  592

Query  359  ATGACAGGAAGATATTACACAGGGACATAAAAGCTCAGAACATTTTTCTTAGCAAGAACGGAATGGTGGCAAAG  432
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  ATGACAGGAAGATATTACACAGGGACATAAAAGCTCAGAACATTTTTCTTAGCAAGAACGGAATGGTGGCAAAG  666

Query  433  CTTGGGGACTTTGGTATAGCAAGAGTCCTGAATAATTCCATGGAACTTGCTCGAACTTGTATTGGAACACCTTA  506
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  CTTGGGGACTTTGGTATAGCAAGAGTCCTGAATAATTCCATGGAACTTGCTCGAACTTGTATTGGAACACCTTA  740

Query  507  CTACCTGTCCCCAGAGATCTGTCAGAATAAACCCTACAACAATAAAACGGATATTTGGTCTCTTGGCTGTGTCT  580
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  CTACCTGTCCCCAGAGATCTGTCAGAATAAACCCTACAACAATAAAACGGATATTTGGTCTCTTGGCTGTGTCT  814

Query  581  TATATGAGCTCTGCACACTTAAACATCCTTTTGAGGGTAACAACTTACAGCAGCTGGTTCTGAAGATTTGTCAA  654
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  TATATGAGCTCTGCACACTTAAACATCCTTTTGAGGGTAACAACTTACAGCAGCTGGTTCTGAAGATTTGTCAA  888

Query  655  GCACATTTTGCCCCAATATCTCCGGGGTTTTCTCGTGAGCTCCATTCCTTGATATCTCAGCTCTTTCAAGTATC  728
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  GCACATTTTGCCCCAATATCTCCGGGGTTTTCTCGTGAGCTCCATTCCTTGATATCTCAGCTCTTTCAAGTATC  962

Query  729  T-CTCGAGACCGA-CAT-CATAAATTCCATTTTGAAA--GCCC-TTTTAGAGAATCTTATTCCC-AATATTTGA  795
            | ||||||||||| ||| |||||||||||||||||||  |||| |||||||||||||||||||| |||||||||
Sbjct  963  TCCTCGAGACCGACCATCCATAAATTCCATTTTGAAAAGGCCCTTTTTAGAGAATCTTATTCCCAAATATTTGA  1036

Query  796  CTCCTGGAGGTCATTCAGGAGGAATTCAGTCACATGCTTATATGCAGAGCAGGAGCGCCAGCTTCTCGACATGC  869
            ||||| ||||||||||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037  CTCCT-GAGGTCATTCAGGAAGAATTCAGTCACATGCTTATATGCAGAGCAGGAGCGCCAGCTTCTCGACATGC  1109

Query  870  TGGGAAGGTGGTCCAGAAGTGTAAAATACAAAAAGTGAGATTCCAGGGAAAGTGCCCACCAAGATCAAGGATAT  943
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1110  TGGGAAGGTGGTCCAGAAGTGTAAAATACAAAAAGTGAGATTCCAGGGAAAGTGCCCACCAAGATCAAGGATAT  1183

Query  944  CTGTGCCAATTAAAAGGAATGCTATATTGCATAGAAATGAATGGAGACCACCAGCTGGAGCCCAGAAGGCCAGA  1017
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1184  CTGTGCCAATTAAAAGGAATGCTATATTGCATAGAAATGAATGGAGACCACCAGCTGGAGCCCAGAAGGCCAGA  1257

Query 1018  TCTATAAAAATGATAGAAAGACCCAAAATTGCTGCTGTCTGTGGACATTATGATTATTATTATGCTCAACTTGA  1091
            |||                                                                       
Sbjct 1258  TCT-----------------------------------------------------------------------  1260

Query 1092  TATGCTGAGGAGGAGAGCCCACAAACCAAGTTATCACCCTATTCCTCAAGAAAATACTGGAGTTGAGGATTACG  1165
                                                                                      
Sbjct 1261  --------------------------------------------------------------------------  1260

Query 1166  GTCAGGAAACGAGGCATGGTCCATCCCCAAGTCAATGGCCTGCTGAGTACCTTCAGAGAAAATTTGAAGGTCCA  1239
                                                 ||||||||||||||||||||||||||||||||.||.|
Sbjct 1261  -------------------------------------GCCTGCTGAGTACCTTCAGAGAAAATTTGAAGCTCAA  1297

Query 1240  CAATATAAGTTTGAAAGTGGAGAAGCAATTGGGTCTTCGTCCATCTCTTGCCGAGCCAAATTACAACCAAGAGA  1313
            ||||||||| ||||||||||||||||||||||||||||||||||||..||||||||||||||||          
Sbjct 1298  CAATATAAG-TTGAAAGTGGAGAAGCAATTGGGTCTTCGTCCATCTTCTGCCGAGCCAAATTAC----------  1360

Query 1314  CAAGAGCTAGNAAGTAATGGAGAAGAGCCTAGATTCCAGGAGCTGCCATTTAGGAAAAACGAAATGAAGGAACA  1387
                                                                                      
Sbjct 1361  --------------------------------------------------------------------------  1360

Query 1388  GGAATATTGGAAGCAGTTAGAGGAAATACGCCAACAGTACCACAATGACATGAAAGAAATTAGAAAGAAGATGG  1461
                                                                                      
Sbjct 1361  --------------------------------------------------------------------------  1360

Query 1462  GGAGAGAACCAGAGGAGAACTCAAAAATAAGTCATAAAACCTATTTGGTGAAGAAGAGTAACCTGCCTGTCCAT  1535
                                                                                      
Sbjct 1361  --------------------------------------------------------------------------  1360

Query 1536  CAAGATGCATCTGAGGGAGAAGCACCTGTGCAGGACATTGAAAAAGACTTGAAACAAATGAGGCTTCAGAACAC  1609
                                                                                      
Sbjct 1361  --------------------------------------------------------------------------  1360

Query 1610  AAAGGAAAGTAAAAATCCAGAACAGAAATATAAAGCTAAGAAGGGGGTAAAATTTGAAATTAATTTAGACAAAT  1683
                                                                                      
Sbjct 1361  --------------------------------------------------------------------------  1360

Query 1684  GTATTTCTGATGAAAACATCCTCCAAGAGGAAGAGGCAATGGATATACCAAATGAAACTTTGACCTTTGAGGAT  1757
                                                                                      
Sbjct 1361  --------------------------------------------------------------------------  1360

Query 1758  GGCATGAAGTTTAAGGAATATGAATGTGTAAAGGAGCATGGAGATTATACAGACAAAGCATTTGAAAAACTTCA  1831
                                                                                      
Sbjct 1361  --------------------------------------------------------------------------  1360

Query 1832  CTGCCCAGAAGCAGGGTTTTCCACGCAGACTGTAGCTGCTGTGGGAAACAGGAGGCAGTGGGATGGAGGAGCGC  1905
                                                                                      
Sbjct 1361  --------------------------------------------------------------------------  1360

Query 1906  CTCAGACTCTGCTGCAGATGATGGCAGTGGCCGACATCACCTCCACCTGCCCCACGGGGCCTGACAGTGAGTCT  1979
                                                                                      
Sbjct 1361  --------------------------------------------------------------------------  1360

Query 1980  GTGCTTAGCGTCAGTCGTCAGGAAGGGAAGACCAAGGACCCGTACAGCCCAGTGCTCATCCTGATG  2045
                                                                              
Sbjct 1361  ------------------------------------------------------------------  1360

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