Nucleotide Global Alignment

Description

Query:
TRCN0000474083
Subject:
XR_001744521.1
Aligned Length:
5828
Identities:
222
Gaps:
5585

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ACTTCCCGGCCTTCCATCCCAGTTTCTTCTAGGAATTCGGAGCCTCCCCTGCAGCGACTCGGAAGATTCGAGGC  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  GGCGGGGGACAAGTCGGCGCCCCAGAGCGGACGAGTCACCAGGTGTCAAGATGCTGCAAGTACATAGGACTGGA  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  CTGGGCAGGCTGGGGGTCAGCCTCTCCAAGGGTCTTCACCACAAAGCTGTGTTGGCCGTCCGGAGGGAGGATGT  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  GAACGCCTGGGAGAGAAGGGCCCCGCTAGCTCCCAAGCACATCAAAGGCATCACCAATCTGGGATACAAGGTCT  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  TGATACAGCCTTCGAATCGGCGGGCCATTCATGATAAGGACTATGTCAAAGCTGGTGGCATTCTTCAGGAGGAT  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  ATTTCTGAAGCTTGTCTAATTTTAGGAGTTAAAAGACCTCCAGAGGAAAAATTAATGTCCAGGAAGACTTATGC  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  ATTTTTCTCCCACACAATAAAAGCTCAGGAGGCCAATATGGGCTTGTTGGATGAGATTCTAAAACAGGAAATTC  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  GCCTTATTGATTATGAGAAAATGGTGGATCATAGAGGAGTACGGGTAGTGGCATTTGGACAGTGGGCTGGTGTG  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  GCAGGAATGATCAACATTTTACATGGAATGGGTTTAAGGCTCCTTGCTTTGGGACATCACACACCTTTTATGCA  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  CATTGGCATGGCTCATAACTACAGGAATAGCAGTCAGGCTGTGCAAGCTGTCCGTGATGCTGGCTATGAAATAT  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  CTTTGGGTTTGATGCCTAAGTCAATAGGACCCTTAACATTTGTGTTCACAGGAACTGGTAATGTTTCTAAGGGA  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  GCCCAAGCAATCTTTAATGAGCTACCTTGTGAATATGTGGAGCCCCATGAATTAAAAGAAGTTTCCCAAACTGG  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  AGACCTCAGAAAAGTGTATGGGACGGTGTTAAGTCGTCATCATCATCTTGTCAGGAAAACAGATGCTGTGTATG  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  ATCCTGCAGAGTATGACAAACATCCGGAGCGCTACATAAGTCGTTTTAATACTGATATTGCACCCTATACAACT  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  TGCTTAATTAATGGAATCTACTGGGAACAAAACACTCCTCGCCTCCTAACCCGCCAAGATGCTCAGAGTCTCCT  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  GGCTCCGGGCAAGTTCTCACCTGCTGGTGTGGAAGGCTGCCCTGCATTACCACACAAACTCGTGGCAATATGTG  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  ACATTTCAGCTGACACAGGAGGGTCTATAGAGTTTATGACTGAGTGTACAACAATAGAGCATCCCTTTTGCATG  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  TATGATGCAGACCAGCATATTATTCATGACAGTGTTGAAGGCTCGGGGATCCTGATGTGTTCCATTGACAATTT  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  GCCGGCACAGCTCCCAATTGAAGCTACAGAATGCTTTGGAGACATGCTTTACCCTTATGTTGAAGAAATGATAT  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  TATCAGACGCGACACAGCCTCTTGAAAGTCAGAATTTTTCTCCTGTGGTGAGAGATGGAACGTGCTCAGTCACT  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  TTCAATGGGCACCAGGAGAAAGGTTTTGGTTCTTGGATCTGGCTACATATCTGAGCCTGTATTAGAATATTTAT  1554

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1555  CAAGAGATGGCAATATAGAAATAACAGTAGGATCTGACATGAAGAATCAAATTGAACAGTTAGGCAAGAAATAT  1628

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1629  AATATTAATCCTGTTAGCATGGACATTTGTAAACAAGAAGAGAAGCTGGGCTTCTTGGTGGCAAAACAGGATCT  1702

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1703  TGTCATCAGCTTGTTGCCTTATGTATTGCACCCTCTTGTGGCCAAGGCCTGCATCACAAACAAAGTTAACATGG  1776

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1777  TCACTGCAAGCTACATCACACCAGCACTAAAAGAATTGGAAAAGAGTTTTCCTTTTTCCTCTTTCCACCTGCTG  1850

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1851  CAGTGTGGAAGATGCTGGCATCACAATCATTGGTGAATTGGGATTGGACCCTGGTCTGGATCACATGTTAGCAA  1924

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1925  TGGAAACAATAGATAAAGCCAAGGAAGTGGGAGCCACGATTGAATCATATATTTCCTACTGTGGTGGGCTTCCA  1998

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1999  GCCCCTGAACATTCAAACAATCCATTGAGATATAAATTTAGCTGGAGTCCAGTGGGAGTTTTGATGAATGTAAT  2072

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2073  GCAGTCTGCCACCTATCTGCTCGATGGAAAGGTTGTGAATGTTGCAGGAGGCATCTCCTTTCTTGATGCCGTTA  2146

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2147  CGTCCATGGATTTTTTTCCAGGATTAAATTTGGAAGGCTATCCTAACAGAGACAGTACGAAATATGCTGAGATT  2220

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2221  TATGGCATTTCTTCTGCTCACACTTTGTTGCGGGGGACACTGAGATATAAGGGATATATGAAAGCTTTGAATGG  2294

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2295  ATTTGTAAAATTAGGTCTTATAAACAGAGAAGCGCTTCCTGCCTTTAGACCTGAGGCCAACCCTCTCACCTGGA  2368

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2369  AACAACTCCTCTGTGACCTAGTTGGGATTTCACCCTCCTCTGAGCATGATGTGTTGAAGGAAGCTGTTCTTAAG  2442

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2443  AAACTAGGAGGAGACAATACCCAGTTGGAGGCTGCTGAATGGTTGGGCTTACTTGGGGATGAACAAGTTCCTCA  2516

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2517  GGCAGAGTCCATTCTGGATGCCCTCTCCAAGCATTTGGTCATGAAGCTTTCCTATGGTCCTGAAGAAAAAGATA  2590

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2591  TGATTGTGATGAGAGACAGCTTTGGAATCAGACATCCTTCTGGACATTTAGAACATAAAACGATTGATCTTGTG  2664

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2665  GCTTATGGGGACATCAATGGCTTTTCAGCCATGGCTAAAACCGTGGGGTTACCCACCGCCATGGCAGCCAAAAT  2738

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2739  GTTGCTTGATGGTGAAATTGGAGCCAAAGGCCTAATGGGGCCCTTTTCAAAGGAGATCTATGGACCAATATTGG  2812

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2813  AGCGAATTAAAGCAGAAGGCATTATATATACTACACAGAGTACAATTAAACCATAATTGGGAATTATATTTTGT  2886

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2887  TTTTTTCTTCCCAGGCAATACACCTCTGAACATGTGTGTGATAAATGGGTTTGCTAATGTGCTGTTTTAAAGTA  2960

Query    1  --------------------------------------------------------------ATGG--------  4
                                                                          ||||        
Sbjct 2961  TAAAGCATAATATGTTTTGGTTAACACAATGTACTTTTTGAACTATAAATCTTTATTTTAATATGGAAATGTTT  3034

Query    5  GGGGC-GGAG-TG--AGCGGTGAACACACTGAACAGAATCTGAGATTTAATAAGCCAA-----------ATCAA  63
            ||..| |||| ||  |||        |||| ||||||    ||..||||||||..|.|           ||.||
Sbjct 3035  GGAACAGGAGATGCAAGC--------CACT-AACAGA----GAACTTTAATAATTCTACCCTGTATTTTATAAA  3095

Query   64  CA---ATGTGGGAAG----------------------------------------TTCGTTTTGTTTTTT----  90
            .|   |||| |.|||                                        ||| |||||||||||    
Sbjct 3096  TACGTATGT-GAAAGTGATGATCATGCTATTTGTTAATTTATTGTGCCACTTTTTTTC-TTTTGTTTTTTTTTT  3167

Query   91  ----------TTTTTTGAGACGGAGTCTCGCTCTGTCACCCAGGCTGCAGTGCAATGGCACGATCTCGGCTCAC  154
                      ||||||||||.||||||||||||||||||||||||||.||||||.||||.||||||||||||||
Sbjct 3168  GTTGTTGTTGTTTTTTGAGATGGAGTCTCGCTCTGTCACCCAGGCTGGAGTGCAGTGGCGCGATCTCGGCTCAC  3241

Query  155  TGCAAGCTCCGCCTCTCAGGTTCACGCCATTCTCCTGCCTCAGCCTTCCCAGTAGCTGGGACTACAGGCGCCCG  228
            |||||||||||||||...||||||||||||||||||||||||||||.||.|||||||||||||||||||.||||
Sbjct 3242  TGCAAGCTCCGCCTCCTGGGTTCACGCCATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGACTACAGGCACCCG  3315

Query  229  CCACCATGCCCGGCT-AATTTTTTGTATTTT-------------------------------------------  258
            ||||||.|||||||| |||||||||||||||                                           
Sbjct 3316  CCACCACGCCCGGCTAAATTTTTTGTATTTTTCAGTAGAGACGGGGTTTCACCATGTTAGCCAGGATGTCCACT  3389

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 3390  TTTTTCTTAAATGAACATATTGTCTTATAACCAGCAAATGAAGTTTTACTTTTTTAGTCAGAAAAAATTTCGTC  3463

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 3464  ATAAAGCTATATTTTTATATTTTTAAAATTGATACAGTTAGATACCTTCAGATTACCTAAGTTAAGTTTTTGCC  3537

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 3538  AAAATGCTATTTTATGCCCTTTTTGTAAAGTTATGATTTATTTTGTAAATATAGTTCCTTATAGTTTTCTCTTG  3611

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 3612  AGTGTTTGGACATGAGAATAGATAAGATTAAATTACAATTTACAAGATCACTTCATTAGGCACAGGAAAAGTAT  3685

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 3686  TTAACAAAATTCAACACCCTTTCACAATAAAAAATAAAAAATAAAAAACCCTCAACAAACTAGGAATAGAAGGA  3759

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 3760  AACTTCCTCAACCTGATAAAGGGCATCTATGAAGAACCCATGGTTAGCATCATACTTAATGGTGAAGGACTGGA  3833

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 3834  TTATTTCCCCCTGAGATCAGAAACAAGACAAGGATGTCTGCTTTGGCCATTTCTATTCAACTTGTACTGGACAG  3907

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 3908  TCAAGAAAGGGCAATTAGGCAAGAAAATAAAATAAAAGTCATCTAGGTTGGAAAGGAAGAAGTATAACTAAATA  3981

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 3982  GAGATGGGAGACGATATGGTGGTTTTGTGCATAGTAATCCAAGGGAAAACTATAGAAAATCCAAAGGCATGATT  4055

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 4056  TATTAATAAATAAATTCAGCAAAGTTACAGGATACAGGATTAAATATGCAGAAATTGGTTATCTTTCAATATAG  4129

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 4130  TATCAATGAATAAATCAAAAATGATGTTAAGAAAACAATTTAATTTTCAACAATGGTCAAGCTTGGTGGCTTGT  4203

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 4204  GCCTGTAATCCCAACACTTTGGGAGTCTGAGGCAGAAAGACTGCTAGAGGCCAGGAGACCAGCCTGGGAAACAG  4277

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 4278  TGAGATCCCATCTCTACAAAAACAAACAAACAAAAAACAACAAGCAAACAAAAAACAGCTGGATGTGATGACAC  4351

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 4352  TCATCTGTCGTCTCAGCTACTCAGAGGCTGAGGTGTAAGGATGGCTTGAGCCCCAAAGTTCGAAGCTGCAATGA  4425

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 4426  GCTATAACTGGGTCACTGCAATCCAGCCTGGATGACAGAGTTAGACCTTGACTCAAAAAAAACAAAAAAGAAAA  4499

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 4500  GAAAAAAATTGACAGCATCAGAAAGAGTAAAATACCAATATAATTGAGGGTCCAGAAATATTGATCACATTTAT  4573

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 4574  CATCAACTGACTTTTGAAAATAGTGCTAAGACAATTCAATGGGGGCAAAATAGTCTTTTTCATTAAATGATGCT  4647

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 4648  TGGAAACATGGATATCCACATGCAAAATAATGAAATTGGACTCCTACCTCATATTGCATATAAAAATTAACTCA  4721

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 4722  AAGTTGACCTAAGATCTAAATGTAAGAGCTAATATTGTAAGTATCTTCAAAGAAAACATGGCGTAAATCTTTCT  4795

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 4796  GACTTTGAATTAGGCAATGATTTCTTAAATAAATGACACTAAAAACACAAGCAACAAAAGAAGAAAATAGGTAA  4869

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 4870  ATTAAAATTAAAACCATTTGTGTTTCCAAGGACAATATCAAGAAAGCAAAAATACAACCCACAGAATGAGATAA  4943

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 4944  TTTTTTTTAAAATCATGTATTAGTTAAGGGAGGAATTTGTATTTAGAATATGTAAAGAACTGTTACAATAATAA  5017

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 5018  TTAAAAGGCATATAATTCAATTTTTAAAAATCAACAAGAGATCTGAATTAACAGTTCTCCAAAGAAGATACACA  5091

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 5092  AAAGGCCAATAAGCACATGAAAAGGTTCTCAACATCACTAGCCATCAGGGAAATGCAAATGAGATCTACAATGA  5165

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 5166  GATATCACTTAACACTCACTGGAATAGATATATAATCAAAGTGATAATATCAAGTGTTGGTGAGGATGCAGAGA  5239

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 5240  AATTGGAACCCTCATGCACTGTTGGTGGATACCCACGTGATATAAAAACAAATGTCTACACAAAAACTTGTGCA  5313

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 5314  CAGATGTTCTTTGCAGCATTATTTATAATAGCCCAAAATTGAAACAGCCCTAATTTCTATCAACTAACAAGTGA  5387

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 5388  ATAAACAAAACGTGGCATATCCATACAAGGAATATTATTCAGCAATAAAAAAAGAGATGAAGTACTGATATGCA  5461

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 5462  CCACAACATGGAAAAACCTTGAAAACATATCAAGTGAAGAATGCCAGACATGAAAGGCCACATATTATATGATT  5535

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 5536  TCATTTATATGAAATGTCCAGAACAGGCGAATATATATAGAGAGAAGGCAGATTAGTGGTTGCTTAGGCTGAAG  5609

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 5610  GGTTGGGGAGGACAAAGGGGTGACTGCTAATTAGTATGGGGTTTCTTTTTTGGGGTGATGTAAACGTTGTAAAG  5683

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 5684  TTGATTGTGGTAATGGTGGCACAACTCTGAATATACTAAAAACCACTGAATTGTATACTTTGAATGTTTGAACT  5757

Query  259  --------------------------------------------------------  258
                                                                    
Sbjct 5758  GTGTGGTATGTAGATTTTATCTCAAGTTGTTATAAAAAATTAAATTACAAATGCAA  5813

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.