Construct: ORF TRCN0000474083
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF000504.1_s317c1
- Derived from:
- ccsbBroadEn_13766
- DNA Barcode:
- TCTCGACACAAACAGACTTCAACG
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000474083
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 147166 | TRIM16L | tripartite motif containing... | NM_001353226.2 | 47.1% | 8.3% | (many diffs) |
| 2 | human | 112267959 | LOC112267959 | uncharacterized protein C9o... | XM_024446606.1 | 44.2% | 10.1% | (many diffs) |
| 3 | human | 107984351 | LOC107984351 | protein GVQW2-like | XM_017018633.1 | 38.9% | 33% | (many diffs) |
| 4 | human | 107984344 | LOC107984344 | uncharacterized LOC107984344 | XR_001748282.2 | 17.1% | (many diffs) | |
| 5 | human | 107984686 | LOC107984686 | uncharacterized LOC107984686 | XR_001750796.1 | 16% | (many diffs) | |
| 6 | human | 107984686 | LOC107984686 | uncharacterized LOC107984686 | XR_001750795.1 | 15.6% | (many diffs) | |
| 7 | human | 414761 | HCG15 | HLA complex group 15 | NR_135289.2 | 12.2% | (many diffs) | |
| 8 | human | 100820709 | LINC00501 | long intergenic non-protein... | NR_047465.1 | 11.1% | (many diffs) | |
| 9 | human | 107986123 | LOC107986123 | uncharacterized LOC107986123 | XR_001740873.1 | 7.4% | (many diffs) | |
| 10 | human | 105372997 | LOC105372997 | uncharacterized LOC105372997 | XR_001755493.2 | 6% | (many diffs) | |
| 11 | human | 105372997 | LOC105372997 | uncharacterized LOC105372997 | XR_938167.3 | 5.4% | (many diffs) | |
| 12 | human | 22944 | KIN | Kin17 DNA and RNA binding p... | NR_045609.2 | 5% | (many diffs) | |
| 13 | human | 101929703 | LOC101929703 | uncharacterized LOC101929703 | XR_002958367.1 | 4.9% | (many diffs) | |
| 14 | human | 4705 | NDUFA10 | NADH:ubiquinone oxidoreduct... | NR_136158.2 | 4.6% | (many diffs) | |
| 15 | human | 123355 | LRRC28 | leucine rich repeat contain... | NR_135754.2 | 3.9% | (many diffs) | |
| 16 | human | 10157 | AASS | aminoadipate-semialdehyde s... | XR_001744523.1 | 3.8% | (many diffs) | |
| 17 | human | 10157 | AASS | aminoadipate-semialdehyde s... | XR_001744514.1 | 3.8% | (many diffs) | |
| 18 | human | 123355 | LRRC28 | leucine rich repeat contain... | NR_135756.2 | 3.8% | (many diffs) | |
| 19 | human | 10157 | AASS | aminoadipate-semialdehyde s... | XR_001744519.1 | 3.8% | (many diffs) | |
| 20 | human | 10157 | AASS | aminoadipate-semialdehyde s... | XR_927326.2 | 3.8% | (many diffs) | |
| 21 | human | 10157 | AASS | aminoadipate-semialdehyde s... | XR_001744524.1 | 3.8% | (many diffs) | |
| 22 | human | 123355 | LRRC28 | leucine rich repeat contain... | NR_135753.2 | 3.8% | (many diffs) | |
| 23 | human | 10157 | AASS | aminoadipate-semialdehyde s... | XR_001744521.1 | 3.8% | (many diffs) | |
| 24 | human | 10157 | AASS | aminoadipate-semialdehyde s... | XR_001744515.1 | 3.7% | (many diffs) | |
| 25 | human | 10157 | AASS | aminoadipate-semialdehyde s... | XR_001744516.1 | 3.7% | (many diffs) | |
| 26 | human | 123355 | LRRC28 | leucine rich repeat contain... | NR_135757.2 | 3.7% | (many diffs) | |
| 27 | human | 10157 | AASS | aminoadipate-semialdehyde s... | XR_001744520.1 | 3.7% | (many diffs) | |
| 28 | human | 10157 | AASS | aminoadipate-semialdehyde s... | XR_001744522.1 | 3.7% | (many diffs) | |
| 29 | human | 123355 | LRRC28 | leucine rich repeat contain... | NR_135758.2 | 3.7% | (many diffs) | |
| 30 | human | 10157 | AASS | aminoadipate-semialdehyde s... | XR_242220.3 | 3.7% | (many diffs) | |
| 31 | human | 10157 | AASS | aminoadipate-semialdehyde s... | XR_001744517.1 | 3.7% | (many diffs) | |
| 32 | human | 123355 | LRRC28 | leucine rich repeat contain... | NR_135759.2 | 3.6% | (many diffs) | |
| 33 | human | 123355 | LRRC28 | leucine rich repeat contain... | NR_135755.2 | 3.5% | (many diffs) | |
| 34 | human | 105376050 | LOC105376050 | uncharacterized LOC105376050 | XR_929618.3 | 3.2% | (many diffs) | |
| 35 | human | 4705 | NDUFA10 | NADH:ubiquinone oxidoreduct... | NR_136157.2 | 2.8% | (many diffs) | |
| 36 | human | 54617 | INO80 | INO80 complex ATPase subunit | XR_001751322.2 | 2.8% | (many diffs) | |
| 37 | human | 4705 | NDUFA10 | NADH:ubiquinone oxidoreduct... | NR_136156.2 | 2.8% | (many diffs) | |
| 38 | human | 4705 | NDUFA10 | NADH:ubiquinone oxidoreduct... | NR_136155.2 | 2.7% | (many diffs) | |
| 39 | human | 107984570 | LINC00444 | long intergenic non-protein... | XR_001749867.2 | 2.4% | (many diffs) | |
| 40 | human | 9687 | GREB1 | growth regulating estrogen ... | XR_001739081.2 | 2.2% | (many diffs) | |
| 41 | human | 26263 | FBXO22 | F-box protein 22 | NR_037623.2 | 1.8% | (many diffs) | |
| 42 | human | 105373618 | LOC105373618 | uncharacterized LOC105373618 | XR_923330.3 | 1.3% | (many diffs) | |
| 43 | human | 107987057 | LOC107987057 | uncharacterized LOC107987057 | XR_001746639.2 | 1.1% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 90
- ORF end:
- 348
- ORF length:
- 258
- Sequence:
-
1 TCAGACAGTG GTTCAAAGTT TTTTTCTTCC ATTTCAGGTG TCGTGAGGCT AGCATCGATT 61 GATCAACAAG TTTGTACAAA AAAGTTGGCA TGGGGGGCGG AGTGAGCGGT GAACACACTG 121 AACAGAATCT GAGATTTAAT AAGCCAAATC AACAATGTGG GAAGTTCGTT TTGTTTTTTT 181 TTTTTGAGAC GGAGTCTCGC TCTGTCACCC AGGCTGCAGT GCAATGGCAC GATCTCGGCT 241 CACTGCAAGC TCCGCCTCTC AGGTTCACGC CATTCTCCTG CCTCAGCCTT CCCAGTAGCT 301 GGGACTACAG GCGCCCGCCA CCATGCCCGG CTAATTTTTT GTATTTTTAC CCAACTTTCT 361 TGTACAAAGT GGTTGATATC GGTAAGCCTA TCCCTAACCC TCTCCTCGGT CTCGATTCTA 421 CGTAGTAATG AACTAGTCCG TAACTTGAAA GTATTTCGAT TTCTTGGCTT TATATATCTT 481 GTGGAAAGGA CGATCTCGAC ACAAACAGAC TTCAACGACG CGTTAAGTCg acaatcaacc 541 tctggattac aaaatttgtg aaagatt