Nucleotide Global Alignment

Description

Query:
TRCN0000474127
Subject:
XM_011510398.3
Aligned Length:
2065
Identities:
1612
Gaps:
452

Alignment

Query    1  ATGCAGGTCTCCAGCCTCAATGAGGTGAAGATTTACAGCCTCAGCTGCGGCAAGTCCCTTCCTGAGTGGCTTTC  74
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query   75  TGATAGGAAGAAGAGAGCGCTACAGAAGAAAGATGTAGATGTCCGTAGGAGAATTGAACTTATTCAGGACTTTG  148
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  149  AAATGCCTACTGTGTGTACCACTATTAAGGTGTCAAAAGATGGACAGTACATTTTAGCAACTGGAACATATAAA  222
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  223  CCTCGGGTTCGATGTTATGACACCTATCAATTATCCTTGAAGTTTGAAAGGTGTTTAGATTCAGAAGTTGTCAC  296
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  297  CTTTGAAATTTTGTCTGATGACTACTCAAAGATTGTCTTCTTACATAATGATAGATACATTGAATTTCATTCGC  370
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  371  AATCAGGTTTTTACTACAAAACCAGAATACCAAAGTTTGGGAGAGATTTCTCTTACCACTATCCATCCTGTGAC  444
                                                                                 .||||
Sbjct    1  ---------------------------------------------------------------------ATGAC  5

Query  445  TTGTACTTTGTTGGTGC-AAGTTCTGAAGTTTATAGGTTAAACTTAGAACAAGGACGATACCTGAATCCTCTAC  517
               ||||         | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct    6  ---TACT---------CAAAGTTCTGAAGTTTATAGGTTAAACTTAGAACAAGGACGATACCTGAATCCTCTAC  67

Query  518  AAACTGATGCTGCGGAGAATAATGTTTGTGACATAAATTCAGTGCATGGCTTGTTTGCCACAGGAACCATAGAG  591
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct   68  AAACTGATGCTGCGGAGAATAATGTTTGTGACATAAATTCAGTGCATGGCTTGTTTGCCACAGGAACCATAGAG  141

Query  592  GGTAGAGTGGAGTGCTGGGACCCAAGAACTCGAAACAGAGTTGGCCTGTTAGACTGCGCCTTAAACAGTGTCAC  665
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  142  GGTAGAGTGGAGTGCTGGGACCCAAGAACTCGAAACAGAGTTGGCCTGTTAGACTGCGCCTTAAACAGTGTCAC  215

Query  666  AGCAGATTCAGAGATAAACAGTTTACCAACAATCTCTGCTTTGAAATTTAATGGTGCCTTGACCATGGCAGTTG  739
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  216  AGCAGATTCAGAGATAAACAGTTTACCAACAATCTCTGCTTTGAAATTTAATGGTGCCTTGACCATGGCAGTTG  289

Query  740  GAACAACCACAGGGCAGGTTTTATTATATGACCTTCGATCTGATAAGCCATTGCTAGTTAAAGATCACCAGTAT  813
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  290  GAACAACCACAGGGCAGGTTTTATTATATGACCTTCGATCTGATAAGCCATTGCTAGTTAAAGATCACCAGTAT  363

Query  814  GGGCTGCCCATTAAGTCCGTTCATTTCCAGGATTCATTAGATCTGATTTTGTCTGCTGACTCTCGAATTGTCAA  887
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  364  GGGCTGCCCATTAAGTCCGTTCATTTCCAGGATTCATTAGATCTGATTTTGTCTGCTGACTCTCGAATTGTCAA  437

Query  888  GATGTGGAATAAGAACTCCGGAAAAATATTTACTTCCTTGGAGCCAGAGCATGACCTTAATGATGTTTGTCTCT  961
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  438  GATGTGGAATAAGAACTCCGGAAAAATATTTACTTCCTTGGAGCCAGAGCATGACCTTAATGATGTTTGTCTCT  511

Query  962  ACCCCAACTCAGGCATGCTTCTGACGGCCAATGAAACCCCCAAGATGGGCATCTATTACATTCCAGTTTTGGGT  1035
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  512  ACCCCAACTCAGGCATGCTTCTGACGGCCAATGAAACCCCCAAGATGGGCATCTATTACATTCCAGTTTTGGGT  585

Query 1036  CCTGCTCCTCGGTGGTGTTCCTTCTTAGACAACTTGACCGAAGAATTAGAAGAGAATCCAGAAAGCACAGTCTA  1109
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  586  CCTGCTCCTCGGTGGTGTTCCTTCTTAGACAACTTGACCGAAGAATTAGAAGAGAATCCAGAAAGCACAGTCTA  659

Query 1110  TGATGATTATAAATTTGTCACCAAGAAAGACCTTGAAAATTTAGGGCTCACCCACCTCATTGGATCTCCTTTCC  1183
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  660  TGATGATTATAAATTTGTCACCAAGAAAGACCTTGAAAATTTAGGGCTCACCCACCTCATTGGATCTCCTTTCC  733

Query 1184  TCCGGGCATATATGCATGGGTTTTTCATGGATATAAGACTCTATCACAAGGTGAAACTGATGGTAAATCCATTT  1257
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  734  TCCGGGCATATATGCATGGGTTTTTCATGGATATAAGACTCTATCACAAGGTGAAACTGATGGTAAATCCATTT  807

Query 1258  GCTTATGAAGAATATAGGAAAGATAAAATACGACAGAAAATAGAAGAAACACGTGCACAGAGAGTCCAGTTAAA  1331
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  808  GCTTATGAAGAATATAGGAAAGATAAAATACGACAGAAAATAGAAGAAACACGTGCACAGAGAGTCCAGTTAAA  881

Query 1332  GAAATTGCCAAAAGTTAACAAAGAGCTGGCACTTAAATTAATTGAGGAAGAAGAGGAGAAGCAGAAATCTACAT  1405
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  882  GAAATTGCCAAAAGTTAACAAAGAGCTGGCACTTAAATTAATTGAGGAAGAAGAGGAGAAGCAGAAATCTACAT  955

Query 1406  GGAAAAAGAAAGTTAAGAGTCTTCCTAATATTCTCACCGATGATCGATTTAAAGTTATGTTTGAGAACCCTGAC  1479
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  956  GGAAAAAGAAAGTTAAGAGTCTTCCTAATATTCTCACCGATGATCGATTTAAAGTTATGTTTGAGAACCCTGAC  1029

Query 1480  TTCCAAGTAGATGAAGAGAGTGAAGAATTTAGGCTTCTGAATCCACTTGTTTCAAAAATTAGTGAAAAAAGGAA  1553
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1030  TTCCAAGTAGATGAAGAGAGTGAAGAATTTAGGCTTCTGAATCCACTTGTTTCAAAAATTAGTGAAAAAAGGAA  1103

Query 1554  GAAGAAACTAAGACTCTTAGAGCAACAAGAACTTCGTGAAAAAGAAGAGGAGGAAGAGCCGGAAGGAAAACCAA  1627
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1104  GAAGAAACTAAGACTCTTAGAGCAACAAGAACTTCGTGAAAAAGAAGAGGAGGAAGAGCCGGAAGGAAAACCAA  1177

Query 1628  GTGATGCAGAAAGTTCGGAGAGTTCAGATGATGAAAAAGCCTGGGTTGAAGAGGTCAGGAAGCAACGCAGACTC  1701
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1178  GTGATGCAGAAAGTTCGGAGAGTTCAGATGATGAAAAAGCCTGGGTTGAAGAGGTCAGGAAGCAACGCAGACTC  1251

Query 1702  CTCCAGCAGGAGGAAAAAGTGAAGCGGCAGGAACGACTCAAGGAGGACCAGCAGACAGTCCTAAAGCCCCAGTT  1775
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1252  CTCCAGCAGGAGGAAAAAGTGAAGCGGCAGGAACGACTCAAGGAGGACCAGCAGACAGTCCTAAAGCCCCAGTT  1325

Query 1776  TTATGAGATCAAAGCAGGAGAAGAATTTAGAAGCTTCAAAGATTCTGCCACAAAGCAGAAACTGATGAACAAAA  1849
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1326  TTATGAGATCAAAGCAGGAGAAGAATTTAGAAGCTTCAAAGATTCTGCCACAAAGCAGAAACTGATGAACAAAA  1399

Query 1850  CCCTTGAAGATCGTTTGAAAATTGAAGCAAAAAATGGGACATTGAGTGTATCCGACACCACCGTTGGCAGCAAA  1923
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1400  CCCTTGAAGATCGTTTGAAAATTGAAGCAAAAAATGGGACATTGAGTGTATCCGACACCACCGTTGGCAGCAAA  1473

Query 1924  CAATTGACATTCACGTTAAAGAGGTCTGAACAGCAGAAGAAGCAACAGGAGGCTGAGAAACTGCATCGACAAGA  1997
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1474  CAATTGACATTCACGTTAAAGAGGTCTGAACAGCAGAAGAAGCAACAGGAGGCTGAGAAACTGCATCGACAAGA  1547

Query 1998  AAGGAAAAGACTCCGTCGTTCGGCCGGACACCTGAAGTCAAGACACAAAAGAGGACGGTCGTTTCAT  2064
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1548  AAGGAAAAGACTCCGTCGTTCGGCCGGACACCTGAAGTCAAGACACAAAAGAGGACGGTCGTTTCAT  1614

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