Nucleotide Global Alignment
Description
- Query:
- TRCN0000474221
- Subject:
- NR_144441.2
- Aligned Length:
- 3034
- Identities:
- 1447
- Gaps:
- 1439
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ACCCCTGAGGATCCCGGTCCACGCGGAGGAGTGGGGCTTTTCACCGCCGCCGCCGCCGCCCTCGGACCTCTCCC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GGGATACTTCACATTTCCCTAGGGACGGGAGCCCGAGGGGTCCGTTCGGCCCTCTTCCTCTCGCTGGGCCGACA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CCCCGCTGTAGGACCGTAACCCTTAGTCCCAATGCCTCCGTAAGCGGAGTTGAGTGGGTGCCTGTGGTTGGAGC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 TGTGGAGGTGTCCCCGGTGGCGAGCGCGGCCAGAACTGCGGTCACTTAAGTTTTCCGTGTGCGGGTTGCAAGGA 296
Query 1 ------------ATGTTA-ATTGATGAAAGGTTACGATGTGAGCATCATA----------------AAG--CTA 43
.||.|| |..||.||.|..|...||| ||||.|||.|| ||| .||
Sbjct 297 GCGTGCGTGCGTCTGGTATAGGGAGGACACCTCTGGAT-TGAGGATCTTATGACCTACTTTAGAGGAAGGTATA 369
Query 44 ATT-------ATCAGACACTG-----------AAGG-------------CT------GAACAC----ACAAGGT 76
||| .|.|||..||| |||| || |||.|| ||| ||
Sbjct 370 ATTTGGCTTCCTGAGATTCTGCCTTAGCAAGAAAGGAGTGGGAAATACCCTTGGAAAGAAAACTAAAACA--GT 441
Query 77 TGCAGAATGAACATGTAAAGTTACAAAATGAACTCAAGCACCTGTTTAATGAAAAGCAAACTCAGCAGGAAAAA 150
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 442 TGCAGAATGAACATGTAAAGTTACAAAATGAACTCAAGCACCTGTTTAATGAAAAGCAAACTCAGCAGGAAAAA 515
Query 151 CTTCAGCTCCTGCTTGAAGAACTAAGAGGAGAATTAGTAGAGAAAACTAAAGATTTAGAAGAAATGAAACTGCA 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 516 CTTCAGCTCCTGCTTGAAGAACTAAGAGGAGAATTAGTAGAGAAAACTAAAGATTTAGAAGAAATGAAACTGCA 589
Query 225 GATATTAACTCCACAAAAATTGGAATTGCTAAGAGCCCAAATACAACAAGAATTAGAAACTCCAATGAGAGAAC 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 590 GATATTAACTCCACAAAAATTGGAATTGCTAAGAGCCCAAATACAACAAGAATTAGAAACTCCAATGAGAGAAC 663
Query 299 GTTTTAGGAATCTAGATGA------------------------------------------------------- 317
|||||||||||||||||||
Sbjct 664 GTTTTAGGAATCTAGATGAAAATGGAAGTTGCATGAGAGGAGGAACCTTTACCTGTTTTGTTCATTGTTATATT 737
Query 318 -----------------------------AGAGGTAGAAAAGTATAGAGCTGTATATAATAAGCTTCGCTATGA 362
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct 738 CCAAGTTCCTAGAACAGATTTTGGTATACAGAGGTAGAAAAGTATAGAGCTGTATATAATAAGCTTCGCTATGA 811
Query 363 ACATACATTTCTCAAGTCAGAATTTGAACACCAGAAGGAAGAGTATGCACGTATTTTAGATGAAGGAAAAATAA 436
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 812 ACATACATTTCTCAAGTCAGAATTTGAACACCAGAAGGAAGAGTATGCACGTATTTTAGATGAAGGAAAAATAA 885
Query 437 AATATGAATCAGAGATTGCAAGACTGGAGGAAGATAAAGAAGAACTACGTAACCAGCTGCTTAATGTTGATCTC 510
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 886 AATATGAATCAGAGATTGCAAGACTGGAGGAAGATAAAGAAGAACTACGTAACCAGCTGCTTAATGTTGATCTC 959
Query 511 ACAAAAGACAGCAAACGAGTGGAACAACTTGCTCGAGAAAAAGTCTATTTGTGTCAAAAATTAAAAGGTTTAGA 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 ACAAAAGACAGCAAACGAGTGGAACAACTTGCTCGAGAAAAAGTCTATTTGTGTCAAAAATTAAAAGGTTTAGA 1033
Query 585 GGCTGAAGTAGCGGAATTAAAGGCTGAAAAGGAGAATTCTGAGGCTCAGGTGGAAAATGCCCAAAGAATACAGG 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1034 GGCTGAAGTAGCGGAATTAAAGGCTGAAAAGGAGAATTCTGAGGCTCAGGTGGAAAATGCCCAAAGAATACAGG 1107
Query 659 TGCGGCAGTTGGCTGAGATGCAGGCTACAGTCAGATCCCTGGAGGCTGAAAAACAATCAGCTAATTTACGGGCA 732
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1108 TGCGGCAGTTGGCTGAGATGCAGGCTACAGTCAGATCCCTGGAGGCTGAAAAACAATCAGCTAATTTACGGGCA 1181
Query 733 GAACGCTTGGAAAAAGAGCTACAATCAAGCAGTGAACAAAATACCTTTTTAATTAATAAATTGCATAAAGCTGA 806
|||||.||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1182 GAACGTTTGGAAAAAGAGCTACAATCAAGCAGTGAACAAAATACCTTTTTAATTAATAAATTGCATAAAGCTGA 1255
Query 807 ACGAGAAATAAATACATTGTCCAGTAAAGTAAAAGAACTTAAACATTCAAACAAACTGGAAATAACAGACATCA 880
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1256 ACGAGAAATAAATACATTGTCCAGTAAAGTAAAAGAACTTAAACATTCAAACAAACTGGAAATAACAGACATCA 1329
Query 881 AACTGGAGACAGCAAGAGCTAAGAGTGAGCTAGAAAGAGAAAGGAATAAGATTCAAAGTGAACTGGATGG--AT 952
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1330 AACTGGAGACAGCAAGAGCTAAGAGTGAGCTAGAAAGAGAAAGGAATAAGATTCAAAGTGAACTGGATGGTAAT 1403
Query 953 TACAGTCAGACAATGAAATT-------------CTCAAAGCAGCTGTTGAACATCACAAAGTG--CTC---TTA 1008
|||..||| || ||.||||.|.|...|||.|.| || ||| |||
Sbjct 1404 ------------ATGTGATTTCCCTTGCTGCTGCT----GCTGCTGCTTATTTTCAGATA-TGAACTCAAATTA 1460
Query 1009 GTAGAAAA---GGATCGTGAATT----------AAT-----ACGTAA-----------------AGTACA---- 1043
.||.||.| |.||| |||||| ||| ||.||| ||||||
Sbjct 1461 TTAAAATAGTTGAATC-TGAATTTTTATTTCCAAATTTTCAACTTAATTTAGTTTTAATTTTGGAGTACATATG 1533
Query 1044 -------------------AGCTG------CCA----AAG----AAGAAGGTTATCAAAAA------CTTGTGG 1078
|| || .|| ||| ||.||..||| ||||| |||.||.
Sbjct 1534 AAATGTTTATTATATGTTGAG-TGTTTTGTTCATTGTAAGATTTAATAACTTTA--AAAAAATCAGTCTTATGT 1604
Query 1079 TATTA-CA----------------AGATGAA----------------------------------AAGTTAGAA 1101
|.||| || |.||||| ||.||..||
Sbjct 1605 TTTTATCATAGTTATTGGATACATAAATGAATTTTGTAAATGGGATGCCATACTTCCTGATTTATAAATTTTAA 1678
Query 1102 CTC--------GAGAACAGATTAG---CAG---ATT-------TGGAGAAAATGAAAGTGGAACATGATGTCTG 1154
.|| |.|.|...||||| ||| ||| |||||||..||| ||||.||.|| ||
Sbjct 1679 ATCTATTTATGGTGTAGTTATTAGTCCCAGGACATTTTAAGTCTGGAGAATGTGA----GGAAGATAAT---TG 1745
Query 1155 G-----AGG------------CAATCTGAAAAG-------------------------GATCA--GTA------ 1178
| ||| |||| |.||||| |.||| |||
Sbjct 1746 GGTTCCAGGCTTAATTTTTTTCAAT-TAAAAAGATTTTTTTATGTAGACCTCAGGCCAGTTCATTGTAGCCTAG 1818
Query 1179 TGAAGAGAA-----ATT------------------------------------------------------GCG 1193
||.||||.| ||| .|.
Sbjct 1819 TGCAGAGTAGGCTTATTTATTTATTTTTTATTTTTATTTTTTATTTTTGAGATGGAGTCTCGCTCTGTCCCCCT 1892
Query 1194 GGCTTCA---CAGATGGCAGAAGAGATCAC------CAGGAAG--GAGCTTCAGAGTGTT-AGG---TTAAAAC 1252
||||..| ||| |||| |.||||.| |.||||| ..||.||..|| ||| |.| || |
Sbjct 1893 GGCTGGAGTGCAG-TGGC----GTGATCTCGGCTCACTGGAAGCTCTGCCTCCCAG-GTTCACGCCATT----C 1956
Query 1253 T------TCAGC--AACAAAT---TGTGACTA------------------------------TTGAA-----AA 1280
| ||||| ..||||| ||.||||| |||.| ||
Sbjct 1957 TCCTGCCTCAGCCTCCCAAATAGCTGGGACTACAGGCGCCCACCACCAGGCTGGCTATTTTTTTGTATTTTTAA 2030
Query 1281 TGCAGAGA---------------------AGGAAAAAAATG-----AAAATTCTGACCT--------------- 1313
|.||||| ||| ||| .|..|.|||||||
Sbjct 2031 -GTAGAGACAGCGTTTCACCGTGTTAGCCAGG------ATGGTCTTGATCTCCTGACCTCGTGATCTGCCTGCC 2097
Query 1314 ----------AAA-----------ACAG--------------CAAATCAGTAG------TTTGCAGATCCAAGT 1346
||| |||| ||....||||| |||..||.||| |||
Sbjct 2098 TCGGCCTCCCAAAGTACTGGGATTACAGGCATGAGCCACGCCCAGCCGAGTAGGCTTATTTTTAAGTTCC-AGT 2170
Query 1347 GACTTCA-CTTG----------CACAGTCAGA------------GAATG---------ACTTGCTGAATTCAAA 1388
||.| |||| |.|| ||||| ..||| |||||..|.|||.|||
Sbjct 2171 ---TTAATCTTGGAACATCTGTCTCA-TCAGATTTCCTCATTATTTATGTTGTTTCTAACTTGAAGTATTTAAA 2240
Query 1389 CCAA---------------------ATGCTGAAG--GAAATG--GTGG--------------AGAGATTAAAAC 1423
.|| |||||..|| ||..|| ||.| ||||.|| |..
Sbjct 2241 -TAAGCTTACCTTTGGCCTGTAGCTATGCTTGAGTTGATCTGTAGTTGAACTCATTTCAGACAGAGTTT--ATG 2311
Query 1424 AAGAATGCC-----------GAAAT------------TTTAGAAGCCAAGCTGAAAAAGCGCAACTAGAA---- 1470
|.||||||| ||||| |.|.| .|||.||| ||| ||.|||
Sbjct 2312 ATGAATGCCTTTCATGTTTTGAAATGGGGTCTCACCATGTTG--CCCAGGCT-----AGC----CTTGAACTCC 2374
Query 1471 ---GCTGAAAAGACATTGG-----------AAG-------AGAA---------ACAG------ATACAGTGGTT 1508
|||.||| ||| ||| ||.| |||| |.||.|||..|
Sbjct 2375 TGGGCTCAAA------TGGTCCTCCTGCCTAAGCCTCCTCAGTAGCTGGGACTACAGGTGCTAACACCGTGTCT 2442
Query 1509 GG-----AAGAA-----------AA--GCATAA------------GCTTCATGAGCG-TATCACAGACAG---A 1548
|| |.||| || | .||| |..||||| | |.|| ||.|.|| |
Sbjct 2443 GGCTGCTATGAATGATTTTTTCCAATTG-TTAATTTCTATTTATTGACTCATG---GATTTC-CATAGAGTTAA 2511
Query 1549 GAAGAAAAGT---------------ACAAT----CA----------------AGCTA-AGGAGAAACTGC---A 1583
||||.|||.| |.||| || ||.|| |.|.|||..||| |
Sbjct 2512 GAAGTAAATTTTTTTAGGAACTTAAAGAATGCTGCATTTTGTTTTCACTTTGAGTTAGATGTGAATTTGCTTTA 2585
Query 1584 G-----CGAGCTGCAA-----TTGCC----CA--GAAAA-------------AGCTTGAACAGGATCTTGAGTT 1628
| |.|.|||||| ||||| || |.||| | |||.||| |.|||||
Sbjct 2586 GTTATTCCATCTGCAAAGTATTTGCCATTTCATTGCAAAGATTTCTGAATTCA--TTGTACA--AACTTGA--- 2652
Query 1629 GGGA--TGCCCTTCTGTGACTGATACATACAG--AGAGAGTGT----ATTCCCCCCACCCCCATTG-AAGAGAG 1693
| ||.|| .|||.|.|.|||| |.|.| ||||| |.| |||| || .|||
Sbjct 2653 ---AAGTGTCC--ATGTTATTTATAC-TTCTGCTAGAGA-TCTAGCAATTC-------------TGCTAGA--- 2703
Query 1694 ATC------TCTTGAAG--------------------------------------------------------- 1704
||| |.||||||
Sbjct 2704 ATCAATAGGTTTTGAAGGGTTTTGTGATTTATTTCACTCTGCTATCAGCCAGCTTTTTCTATGAGGCTTAGGTC 2777
Query 1705 -------------------------------------------------------------------------- 1704
Sbjct 2778 ACAGAACCTCTTTAGAGGTGAAGTAAGTAAACCTCTGGTTATCATCCAGTTTGATCTCAACTCTCAATGTTCGA 2851
Query 1705 -------------------------------------------------------------------------- 1704
Sbjct 2852 ATGAGTAAATGTATACAGCTTTTATTAAAGTTTTTATATGTGTATGCACTAAATAAACAGTGACAGGAAAATTT 2925
