Construct: ORF TRCN0000474221

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF006307.1_s317c1
Derived from:
ccsbBroadEn_11953
DNA Barcode:
AGAGGAAGCCAATAGCGCCGGCAT
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CEP83 (51134)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000474221
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 51134 CEP83 centrosomal protein 83 NM_001042399.1 79.6% 74.8% (many diffs)
2 human 51134 CEP83 centrosomal protein 83 NM_001346457.2 79.6% 74.8% (many diffs)
3 human 51134 CEP83 centrosomal protein 83 NM_001368037.1 79.6% 74.8% (many diffs)
4 human 51134 CEP83 centrosomal protein 83 NM_001368038.1 79.6% 74.8% (many diffs)
5 human 51134 CEP83 centrosomal protein 83 NM_016122.3 79.6% 74.8% (many diffs)
6 human 51134 CEP83 centrosomal protein 83 XM_011538424.2 79.6% 74.8% (many diffs)
7 human 51134 CEP83 centrosomal protein 83 XM_017019385.2 79.6% 74.8% (many diffs)
8 human 51134 CEP83 centrosomal protein 83 XM_017019386.2 79.6% 74.8% (many diffs)
9 human 51134 CEP83 centrosomal protein 83 XM_024449002.1 79.6% 74.8% (many diffs)
10 human 51134 CEP83 centrosomal protein 83 NM_001346458.1 72.9% 68.1% (many diffs)
11 human 51134 CEP83 centrosomal protein 83 NM_001346459.1 72.9% 68.1% (many diffs)
12 human 51134 CEP83 centrosomal protein 83 NM_001368039.1 72.9% 68.1% (many diffs)
13 human 51134 CEP83 centrosomal protein 83 NM_001368040.1 72.9% 68.1% (many diffs)
14 human 51134 CEP83 centrosomal protein 83 XM_017019388.1 69.3% 62.7% (many diffs)
15 human 51134 CEP83 centrosomal protein 83 XM_024449003.1 69.3% 62.7% (many diffs)
16 human 51134 CEP83 centrosomal protein 83 XM_024449004.1 69.3% 62.7% (many diffs)
17 human 51134 CEP83 centrosomal protein 83 XM_017019389.2 69.2% 64.4% (many diffs)
18 human 51134 CEP83 centrosomal protein 83 NM_001368041.1 68.9% 64.4% (many diffs)
19 human 51134 CEP83 centrosomal protein 83 XR_002957332.1 68.6% (many diffs)
20 human 51134 CEP83 centrosomal protein 83 XM_024449005.1 67.8% 63% (many diffs)
21 human 51134 CEP83 centrosomal protein 83 XR_001748739.2 64.6% (many diffs)
22 human 51134 CEP83 centrosomal protein 83 XR_001748737.2 62.8% (many diffs)
23 human 51134 CEP83 centrosomal protein 83 XR_002957333.1 54.5% (many diffs)
24 human 51134 CEP83 centrosomal protein 83 NM_001346460.2 52.8% 52.7% (many diffs)
25 human 51134 CEP83 centrosomal protein 83 NM_001346461.2 52.8% 52.7% (many diffs)
26 human 51134 CEP83 centrosomal protein 83 XM_024449006.1 49.9% 45.7% (many diffs)
27 human 51134 CEP83 centrosomal protein 83 XM_024449007.1 49.9% 45.7% (many diffs)
28 human 51134 CEP83 centrosomal protein 83 NR_160432.1 49.1% (many diffs)
29 human 51134 CEP83 centrosomal protein 83 NM_001346462.2 43.4% 43.3% (many diffs)
30 human 51134 CEP83 centrosomal protein 83 NR_160431.1 38.3% (many diffs)
31 human 51134 CEP83 centrosomal protein 83 XR_001748736.2 31.4% (many diffs)
32 human 51134 CEP83 centrosomal protein 83 XR_001748735.2 31.1% (many diffs)
33 human 51134 CEP83 centrosomal protein 83 NM_001368042.1 30% 29.4% (many diffs)
34 human 51134 CEP83 centrosomal protein 83 XR_001748734.2 29.7% (many diffs)
35 human 51134 CEP83 centrosomal protein 83 XR_001748733.2 23.6% (many diffs)
36 human 51134 CEP83 centrosomal protein 83 XR_001748731.2 23.1% (many diffs)
37 human 51134 CEP83 centrosomal protein 83 XR_001748732.2 15.5% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1773
ORF length:
1704
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcaccat gttaattgat gaaaggttac gatgtgagca tcataaagct aattatcaga
121cactgaaggc tgaacacaca aggttgcaga atgaacatgt aaagttacaa aatgaactca
181agcacctgtt taatgaaaag caaactcagc aggaaaaact tcagctcctg cttgaagaac
241taagaggaga attagtagag aaaactaaag atttagaaga aatgaaactg cagatattaa
301ctccacaaaa attggaattg ctaagagccc aaatacaaca agaattagaa actccaatga
361gagaacgttt taggaatcta gatgaagagg tagaaaagta tagagctgta tataataagc
421ttcgctatga acatacattt ctcaagtcag aatttgaaca ccagaaggaa gagtatgcac
481gtattttaga tgaaggaaaa ataaaatatg aatcagagat tgcaagactg gaggaagata
541aagaagaact acgtaaccag ctgcttaatg ttgatctcac aaaagacagc aaacgagtgg
601aacaacttgc tcgagaaaaa gtctatttgt gtcaaaaatt aaaaggttta gaggctgaag
661tagcggaatt aaaggctgaa aaggagaatt ctgaggctca ggtggaaaat gcccaaagaa
721tacaggtgcg gcagttggct gagatgcagg ctacagtcag atccctggag gctgaaaaac
781aatcagctaa tttacgggca gaacgcttgg aaaaagagct acaatcaagc agtgaacaaa
841ataccttttt aattaataaa ttgcataaag ctgaacgaga aataaataca ttgtccagta
901aagtaaaaga acttaaacat tcaaacaaac tggaaataac agacatcaaa ctggagacag
961caagagctaa gagtgagcta gaaagagaaa ggaataagat tcaaagtgaa ctggatggat
1021tacagtcaga caatgaaatt ctcaaagcag ctgttgaaca tcacaaagtg ctcttagtag
1081aaaaggatcg tgaattaata cgtaaagtac aagctgccaa agaagaaggt tatcaaaaac
1141ttgtggtatt acaagatgaa aagttagaac tcgagaacag attagcagat ttggagaaaa
1201tgaaagtgga acatgatgtc tggaggcaat ctgaaaagga tcagtatgaa gagaaattgc
1261gggcttcaca gatggcagaa gagatcacca ggaaggagct tcagagtgtt aggttaaaac
1321ttcagcaaca aattgtgact attGAAAATG CAGAGAAGGA AAAAAATGAA AATTCTGACC
1381TAAAACAGCA AATCAGTAGT TTGCAGATCC AAGTGACTTC ACTTGCACAG TCAGAGAATG
1441ACTTGCTGAA TTCAAACCAA ATGCTGAAGG AAATGGTGGA GAGATTAAAA CAAGAATGCC
1501GAAATTTTAG AAGCCAAGCT GAAAAAGCGC AACTAGAAGC TGAAAAGACA TTGGAAGAGA
1561AACAGATACA GTGGTTGGAA GAAAAGCATA AGCTTCATGA GCGTATCACA GACAGAGAAG
1621AAAAGTACAA TCAAGCTAAG GAGAAACTGC AGCGAGCTGC AATTGCCCAG AAAAAGCTTG
1681AACAGGATCT TGAGTTGGGA TGCCCTTCTG TGACTGATAC ATACAGAGAG AGTGTATTCC
1741CCCCACCCCC ATTGAAGAGA GATCTCTTGA AGTTGCCAAC TTTCTTGTAC AAAGTGGTTG
1801ATATCGGTAA GCCTATCCCT AACCCTCTCC TCGGTCTCGA TTCTACGTAG TAATGAACTA
1861GTCCGTAACT TGAAAGTATT TCGATTTCTT GGCTTTATAT ATCTTGTGGA AAGGACGAAG
1921AGGAAGCCAA TAGCGCCGGC ATACGCGTTA AGTCgacaat caacctctgg attacaaaat
1981ttgtgaaaga tt

Download FASTA (ORF) (Full)