Nucleotide Global Alignment

Description

Query:
TRCN0000474221
Subject:
XR_002957333.1
Aligned Length:
2895
Identities:
1578
Gaps:
1303

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GCCTTAAGACAAGTAGTTCCCCATGTGACCCCAGGTGGGCCCTGAACTTGGGATAACCAGGACAGGAGACTTGG  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  AGCAGGAGGTGCGGGGGCGAGGAGGGCTCTCTCCCGGGCGATTGGTCCTAACCCGAGGTTCCCTCGTGGCAAGC  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  TGAGCCGACTCCCCACTCGTGGGCTGATGCCCGAGGCAGACGCGGCAGGCAGGCGGCTTCGGGAGCGCATATCT  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  GCACCCATGGGGACGATGGCAGGCTGGCGAAGGGAGAGAGGTGGCGGCAGGACTACCATTTGAGGCTCTCAAAT  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  GGTGTGGGGAAGAGGGAAGGAGAGGCGCGAAAAGGAGGAAAACCCCTGGAGACGCTGTGTCGGGCGGAGGCTAG  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  GGAGACCGGCTTCGCGCTCCAACGACGCGCATCACTCAGACTCCAAGGCAAGTGCCCGGGGCTAGATTTTCCGT  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  CCCCTGGGGCTCTGGGGATCTCTGAGTCCATCCCAGGGCCCTCCAGGAACGCCTTCGGGAGCGCAGCCCGGCCC  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  CGCCGCTGCCGCTGTCACCCGTGGCCGCTCCCGCCTCGGTTCGTTTGTCTCCTCCCTCTAACGGCTCCGGCAGC  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  AACCGGCGTCGGTGGCGTGGGTGACGTCGGCGTGGGGGGTGGGACTTCCTGCTTCGCGTGCCGCTGGGCCAAGG  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  GACAGAGCCCGCTCCTCCAGGCTGGTGGGGCGGTGCGATGAGGCGGCTTCTGGGCCATACGTCAGCACGTGGGG  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  TGGCGCCGCACCCCTGAGGATCCCGGTCCACGCGGAGGAGTGGGGCTTTTCACCGCCGCCGCCGCCGCCCTCGG  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  ACCTCTCCCGGGATACTTCACATTTCCCTAGGGACGGGAGCCCGAGGGGTCCGTTCGGCCCTCTTCCTCTCGCT  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  GGGCCGACACCCCGCTGTAGGACCGTAACCCTTAGTCCCAATGCCTCCGTAAGCGGAGTTGAGTGGGTGCCTGT  962

Query    1  --------------------------------------------------------ATGTTAATT---------  9
                                                                    |.|||  ||         
Sbjct  963  GGTTGGAGCTGTGGAGGTGTCCCCGGTGGCGAGCGCGGCCAGAACTGCGGTCACTTAAGTT--TTCCGTGTGCG  1034

Query   10  -GATGAAAGGTTA-CGATGTGAGCATC----ATAA---AGCTAATTATCAGACACTG-----------AAGG--  61
             |.||.||||  | || ||.|.||.||    ||||   .|||  |..|.|||..|||           ||||  
Sbjct 1035  GGTTGCAAGG--AGCG-TGCGTGCGTCTGGTATAATTTGGCT--TCCTGAGATTCTGCCTTAGCAAGAAAGGAG  1103

Query   62  -----------CT------GAACAC----ACAAGGTTGCAGAATGAACATGTAAAGTTACAAAATGAACTCAAG  114
                       ||      |||.||    |||  ||||||||||||||||||||||||||||||||||||||||
Sbjct 1104  TGGGAAATACCCTTGGAAAGAAAACTAAAACA--GTTGCAGAATGAACATGTAAAGTTACAAAATGAACTCAAG  1175

Query  115  CACCTGTTTAATGAAAAGCAAACTCAGCAGGAAAAACTTCAGCTCCTGCTTGAAGAACTAAGAGGAGAATTAGT  188
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1176  CACCTGTTTAATGAAAAGCAAACTCAGCAGGAAAAACTTCAGCTCCTGCTTGAAGAACTAAGAGGAGAATTAGT  1249

Query  189  AGAGAAAACTAAAGATTTAGAAGAAATGAAACTGCAGATATTAACTCCACAAAAATTGGAATTGCTAAGAGCCC  262
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1250  AGAGAAAACTAAAGATTTAGAAGAAATGAAACTGCAGATATTAACTCCACAAAAATTGGAATTGCTAAGAGCCC  1323

Query  263  AAATACAACAAGAATTAGAAACTCCAATGAGAGAACGTTTTAGGAATCTAGATGAAGAGGTAGAAAAGTATAGA  336
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1324  AAATACAACAAGAATTAGAAACTCCAATGAGAGAACGTTTTAGGAATCTAGATGAAGAGGTAGAAAAGTATAGA  1397

Query  337  GCTGTATATAATAAGCTTCGCTATGAACATACATTTCTCAAGTCAGAATTTGAACACCAGAAGGAAGAGTATGC  410
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1398  GCTGTATATAATAAGCTTCGCTATGAACATACATTTCTCAAGTCAGAATTTGAACACCAGAAGGAAGAGTATGC  1471

Query  411  ACGTATTTTAGATGAAGGAAAAATAAAATATGAATCAGAGATTGCAAGACTGGAGGAAGATAAAGAAGAACTAC  484
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1472  ACGTATTTTAGATGAAGGAAAAATAAAATATGAATCAGAGATTGCAAGACTGGAGGAAGATAAAGAAGAACTAC  1545

Query  485  GTAACCAGCTGCTTAATGTTGATCTCACAAAAGACAGCAAACGAGTGGAACAACTTGCTCGAGAAAAAGTCTAT  558
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1546  GTAACCAGCTGCTTAATGTTGATCTCACAAAAGACAGCAAACGAGTGGAACAACTTGCTCGAGAAAAAGTCTAT  1619

Query  559  TTGTGTCAAAAATTAAAAGGTTTAGAGGCTGAAGTAGCGGAATTAAAGGCTGAAAAGGAGAATTCTGAGGCTCA  632
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1620  TTGTGTCAAAAATTAAAAGGTTTAGAGGCTGAAGTAGCGGAATTAAAGGCTGAAAAGGAGAATTCTGAGGCTCA  1693

Query  633  GGTGGAAAATGCCCAAAGAATACAGGTGCGGCAGTTGGCTGAGATGCAGGCTACAGTCAGATCCCTGGAGGCTG  706
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1694  GGTGGAAAATGCCCAAAGAATACAGGTGCGGCAGTTGGCTGAGATGCAGGCTACAGTCAGATCCCTGGAGGCTG  1767

Query  707  AAAAACAATCAGCTAATTTACGGGCAGAACGCTTGGAAAAAGAGCTACAATCAAGCAGTGAACAAAATACCTTT  780
            |||||||||||||||||||||||||||||||.||||||||||||||||||||||||||||||||||||||||||
Sbjct 1768  AAAAACAATCAGCTAATTTACGGGCAGAACGTTTGGAAAAAGAGCTACAATCAAGCAGTGAACAAAATACCTTT  1841

Query  781  TTAATTAATAAATTGCATAAAGCTGAACGAGAAATAAATACATTGTCCAGTAAAGTAAAAGAACTTAAACATTC  854
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1842  TTAATTAATAAATTGCATAAAGCTGAACGAGAAATAAATACATTGTCCAGTAAAGTAAAAGAACTTAAACATTC  1915

Query  855  AAACAAACTGGAAATAACAGACATCAAACTGGAGACAGCAAGAGCTAAGAGTGAGCTAGAAAGAGAAAGGAATA  928
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1916  AAACAAACTGGAAATAACAGACATCAAACTGGAGACAGCAAGAGCTAAGAGTGAGCTAGAAAGAGAAAGGAATA  1989

Query  929  AGATTCAAAGTGAACTGGATGGATTACAGTCAGACAATGAAATTCTCAAAGCAGCTGTTGAACATCACAAAGTG  1002
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1990  AGATTCAAAGTGAACTGGATGGATTACAGTCAGACAATGAAATTCTCAAAGCAGCTGTTGAACATCACAAAGTG  2063

Query 1003  CTCTTAGTAGAAAAGGATCGTGAATTAATACGTAAAGTACAAGCTGCCAAAGAAGAAGGTTATCAAAAACTTGT  1076
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2064  CTCTTAGTAGAAAAGGATCGTGAATTAATACGTAAAGTACAAGCTGCCAAAGAAGAAGGTTATCAAAAACTTGT  2137

Query 1077  GGTATTACAAGATGAAAAGTTAGAACTCGAGAACAGATTAGCAGATTTGGAGAAAATGAAAGTGGAACATGATG  1150
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2138  GGTATTACAAGATGAAAAGTTAGAACTCGAGAACAGATTAGCAGATTTGGAGAAAATGAAAGTGGAACATGATG  2211

Query 1151  TCTGGAGGCAATCTGAAAAGGATCAGTATGAAGAGAAATTGCGGGCTTCACAGATGGCAGAAGAGATCACCAGG  1224
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2212  TCTGGAGGCAATCTGAAAAGGATCAGTATGAAGAGAAATTGCGGGCTTCACAGATGGCAGAAGAGATCACCAGG  2285

Query 1225  AAGGAGCTTCAGAGTGT---------------------------------------------------------  1241
            |||||||||||||||||                                                         
Sbjct 2286  AAGGAGCTTCAGAGTGTTAGGATGTTCTGTGATTCTCTTTCACTTTCCCTGCCCCAGCCCTGGAATTAAACATT  2359

Query 1242  ----------------------------------------------------------------TAGGTTAAAA  1251
                                                                            ||||||||||
Sbjct 2360  TATCTGAGGTGCTTTGATTCCTTTTTAATTGGAGAATGGCATTTAGAAACCAAAATCTCAACTCTAGGTTAAAA  2433

Query 1252  CTTCAGCAACAAATTGTGACTATTGAAAATGCAGAGAAGGAAAAAAATGAAAATTCTGACCTAAAACAGCAAAT  1325
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2434  CTTCAGCAACAAATTGTGACTATTGAAAATGCAGAGAAGGAAAAAAATGAAAATTCTGACCTAAAACAGCAAAT  2507

Query 1326  CAGTAGTTTGCAGATCCAAGTGACTTCACTTGCACAGTCAGAGAATGACTTGCTGAATTCAAACCAAATGCTGA  1399
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2508  CAGTAGTTTGCAGATCCAAGTGACTTCACTTGCACAGTCAGAGAATGACTTGCTGAATTCAAACCAAATGCTGA  2581

Query 1400  AGGAAATGGTGGAGAGATTAAAACAAGAATGCCGAAATTTTAGAAGCCAAGCTGAAAAAGCGCAACTAGAAGCT  1473
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2582  AGGAAATGGTGGAGAGATTAAAACAAGAATGCCGAAATTTTAGAAGCCAAGCTGAAAAAGCGCAACTAGAAGCT  2655

Query 1474  GAAAAGACATTGGAAGAGAAACAGATACAGTGGTTGGAAGAAAAGCATAAGCTTCATGAGCGTATCACAGACAG  1547
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2656  GAAAAGACATTGGAAGAGAAACAGATACAGTGGTTGGAAGAAAAGCATAAGCTTCATGAGCGTATCACAGACAG  2729

Query 1548  AGAAGAAAAGTACAATCAAGCTAAGGAGAAACTGCAGCGAGCTGCAATTGCCCAGAAAAAGCTTGAACAGGATC  1621
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||                    
Sbjct 2730  AGAAGAAAAGTACAATCAAGCTAAGGAGAAACTGCAGCGAGCTGCAATTGCCCA--------------------  2783

Query 1622  TTGAGTTGGGATGCCCTTCTGTGACTGATACATACAGAGAGAGTGTATTCCCCCCACCCCCATTGAAGAGAGAT  1695
                                                                                      
Sbjct 2784  --------------------------------------------------------------------------  2783

Query 1696  CTCTTGAAG  1704
                     
Sbjct 2784  ---------  2783

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