Nucleotide Global Alignment
Description
- Query:
- TRCN0000474228
- Subject:
- XR_001738850.1
- Aligned Length:
- 2730
- Identities:
- 1424
- Gaps:
- 1305
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GTTTTTGTTGAAAGAGTCATTAACAGTTAGGAGTTGATGGCAGTTTCAATAACAGGTCATTGCCGAGAAAAGGA 74
Query 1 ------------ATGCAGAAATCTACAAATTCTGATACTTCCGTGGAAACACTGAATTCTACCCGCCAAGGCAC 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 75 TAGCACTATAATATGCAGAAATCTACAAATTCTGATACTTCCGTGGAAACACTGAATTCTACCCGCCAAGGCAC 148
Query 63 AGGAGCTGTGCAAATGAGAATCAAAAATGCCAACAGCCACCATGACAGGCTCAGCCAAAGTAAATCCATGATCC 136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 149 AGGAGCTGTGCAAATGAGAATCAAAAATGCCAACAGCCACCATGACAGGCTCAGCCAAAGTAAATCCATGATCC 222
Query 137 TCACCGATGTCGGGAAGGTCACTGAACCTATATCCAGACACAGAAGGAATCATTCACAGCATATCTTGAAAGAT 210
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 TCACCGATGTCGGGAAGGTCACTGAACCTATATCCAGACACAGAAGGAATCATTCACAGCATATCTTGAAAGAT 296
Query 211 GTCATTCCTCCATTGGAACAACTGATGGTTGAAAAAGAAGGTTATCTGCAAAAAGCTAAAATTGCAGATGGAGG 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 GTCATTCCTCCATTGGAACAACTGATGGTTGAAAAAGAAGGTTATCTGCAAAAAGCTAAAATTGCAGATGGAGG 370
Query 285 AAAGAAACTAAGGAAAAACTGGTCTACTTCCTGGATTGTTCTTTCTAGTCGAAGAATTGAATTTTACAAAGAAT 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 AAAGAAACTAAGGAAAAACTGGTCTACTTCCTGGATTGTTCTTTCTAGTCGAAGAATTGAATTTTACAAAGAAT 444
Query 359 CCAAGCAACAGGCTCTGTCCAATATGAAAACTGGGCACAAACCAGAAAGTGTGGATTTGTGTGGAGCACACATT 432
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 CCAAGCAACAGGCTCTGTCCAATATGAAAACTGGGCACAAACCAGAAAGTGTGGATTTGTGTGGAGCACACATT 518
Query 433 GAATGGGCCAAGGAAAAATCGAGCAGAAAGAATGTCTTTCAGATCACAACAGTATCAGGAAATGAGTTCCTTCT 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 GAATGGGCCAAGGAAAAATCGAGCAGAAAGAATGTCTTTCAGATCACAACAGTATCAGGAAATGAGTTCCTTCT 592
Query 507 ACAGTCAGATATTGACTTCATCATATTGGATTGGTTCCACGCTATCAAAAATGCAATTGACAGATTGCCAAAGG 580
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 ACAGTCAGATATTGACTTCATCATATTGGATTGGTTCCACGCTATCAAAAATGCAATTGACAGATTGCCAAAGG 666
Query 581 ATTCAAGTTGTCCATCAAGAAACCTGGAATTATTCAAAATCCAAAGATCCTCTAGCACTGAATTGCTAAGTCAC 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 ATTCAAGTTGTCCATCAAGAAACCTGGAATTATTCAAAATCCAAAGATCCTCTAGCACTGAATTGCTAAGTCAC 740
Query 655 TACGACAGTGATATAAAAGAACAGAAACCAGAGCACAGAAAATCTTTAATGTTCAGACTGCATCACAGTGCTTC 728
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 TACGACAGTGATATAAAAGAACAGAAACCAGAGCACAGAAAATCTTTAATGTTCAGACTGCATCACAGTGCTTC 814
Query 729 CGATACAAGCGACAAAAATCGAGTTAAAAGCAGATTAAAGAAGTTTATTACCCGAAGACCTTCCCTGAAAACTC 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 CGATACAAGCGACAAAAATCGAGTTAAAAGCAGATTAAAGAAGTTTATTACCCGAAGACCTTCCCTGAAAACTC 888
Query 803 TGCAAGAAAAAGGACTTATTAAAGATCAAATTTTTGGCTCTCATCTGCACAAAGTGTGTGAACGTGAAAATTCC 876
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 TGCAAGAAAAAGGACTTATTAAAGATCAAATTTTTGGCTCTCATCTGCACAAAGTGTGTGAACGTGAAAATTCC 962
Query 877 ACAGTTCCGTGGTTTGTAAAGCAATGCATTGAAGCTGTTGAGAAAAGAGGTCTAGATGTTGATGGAATATATCG 950
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 ACAGTTCCGTGGTTTGTAAAGCAATGCATTGAAGCTGTTGAGAAAAGAGGTCTAGATGTTGATGGAATATATCG 1036
Query 951 AGTTAGTGGCAATCTGGCAACAATACAGAAGTTAAGATTTATTGTCAACCAAGAAGAGAAGCTGAATTTGGACG 1024
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 AGTTAGTGGCAATCTGGCAACAATACAGAAGTTAAGATTTATTGTCAACCAAGAAGAGAAGCTGAATTTGGACG 1110
Query 1025 ACAGCCAGTGGGAGGACATCCACGTTGTCACCGGAGCACTGAAGATGTTTTTCCGGGAGCTGCCTGAGCCGCTC 1098
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 ACAGCCAGTGGGAGGACATCCACGTTGTCACCGGAGCACTGAAGATGTTTTTCCGGGAGCTGCCTGAGCCGCTC 1184
Query 1099 TTCCCTTACAGTTTCTTTGAGCAGTTTGTGGAAGCGATCAAAAAGCAAGACAACAACACAAGAATTGAAGCTGT 1172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 TTCCCTTACAGTTTCTTTGAGCAGTTTGTGGAAGCGATCAAAAAGCAAGACAACAACACAAGAATTGAAGCTGT 1258
Query 1173 AAAATCTCTTGTACAAAAACTCCCTCCGCCAAATCGTGACACCATGAAAGTCCCCTTTGGACATCTAACTAA-- 1244
|||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||||||
Sbjct 1259 AAAATCTCTTGTACAAAAACTCCCTCCGCCAAATCGTGACACCATGAAAGTCCTCTTTGGACATCTAACTAAGA 1332
Query 1245 -------------------------------------------------------------------------- 1244
Sbjct 1333 TCCAGACACACCATGAAAGCGGTTTCAAGTTACAAGTAAATACTGGAGTGCTTATCTCAGTAACTTTAACTGGA 1406
Query 1245 -------------------------------------------------------------------------- 1244
Sbjct 1407 CAAAGTCATAAAACAAATGGAAAAGTATACCCTTTAATGCTATGCAATACCTTGTCTTAAAGTTCTTGAGAAAT 1480
Query 1245 -------------------------------------------------------------------------- 1244
Sbjct 1481 ATCCGTTACTCTGTCCCAATTATTCCCTTTTTTTTCAACTGAAGAAATAGCTATAAAATAAAGAAACTAAGAGT 1554
Query 1245 -------------------------------------------------------------------------- 1244
Sbjct 1555 CAGCTAAATCCTCCTTCAAATAAAATAAATAAAACACACAGAAGAGAATCTATCTAGTTAAAAACCTTCAAAGG 1628
Query 1245 -------------------------------------------------------------------------- 1244
Sbjct 1629 ATGACGATCGTCCATGTCCAGGCCACATAATCCCAGTTTTAACAATTAATGCCTGATCCTGTTTTTTACATCCC 1702
Query 1245 -------------------------------------------------------------------------- 1244
Sbjct 1703 AGTTAATTTCCTAATCTTGTCAGAACTTTCATTTAGTTCAATAGAGATGGAAATAGATGTTTTAAATTAAGATT 1776
Query 1245 -------------------------------------------------------------------------- 1244
Sbjct 1777 TAAGATCAGATTATTATATCACTTCACAGTATTCACATTTTAAGATTGATTATTATACATGGGAAGAAGTGTTG 1850
Query 1245 -------------------------------------------------------------------------- 1244
Sbjct 1851 TTTGCTAGCCACCAACCTTTCTTGGGTGGTATGACTATATTTCACCCTGTACCAATTTATAAACTGGGTTTAAT 1924
Query 1245 -------------------------------------------------------------------------- 1244
Sbjct 1925 TATGCACGAGTGTGTGCACACAATTATATCTTGTTAAGCATTTTTTTGCTAAGTTTTTGATAAACAGCCAATCG 1998
Query 1245 -------------------------------------------------------------------------- 1244
Sbjct 1999 TGGCGTGTCATCAAAGCCTGAGAAGACTAAATAAGAAGATTGTTTAACAGGAATTTAAATATATTCGTGTTTGA 2072
Query 1245 -------------------------------------------------------------------------- 1244
Sbjct 2073 AAGAATCATTAGAATGTTTTCCTTAGTCTTAATGCATTTGGTAGTTCTTCAGAAAATCTATCGTCAACCCTTGT 2146
Query 1245 -------------------------------------------------------------------------- 1244
Sbjct 2147 ATGTAGTGTTTATTCCAAATTGTTGCAAATATATATATTTTGAAGTTTGTTTAGTGAGGGTCAGGGAATGTAAT 2220
Query 1245 -------------------------------------------------------------------------- 1244
Sbjct 2221 GAAGTGCCAAAAATTCCACTTGACCTACGTACTCTACAGTCAACAGAAAAGCACTCCATTTTTGCAGAGCTCTG 2294
Query 1245 ------------------------------------------------------------------------GA 1246
||
Sbjct 2295 AGTTAAATGCACTCCTCAAAGCAGATCAGCTATCAACTGGGAAAGCTTAATGCGGCACAGTTGGACTAGAAGGA 2368
Query 1247 TAGTGGCCAAAGCCTCCAAGAACCTCATGTCCACGCAAAGCTTGGGGATTGTATTTGGACCTACCCTTCTGCGA 1320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2369 TAGTGGCCAAAGCCTCCAAGAACCTCATGTCCACGCAAAGCTTGGGGATTGTATTTGGACCTACCCTTCTGCGA 2442
Query 1321 GCTGAAAATGAAACAGGAAACATGGCGATCCACATGGTCTACCAGAACCAGATAGCTGAGCTCATGCTGAGTGA 1394
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2443 GCTGAAAATGAAACAGGAAACATGGCGATCCACATGGTCTACCAGAACCAGATAGCTGAGCTCATGCTGAGTGA 2516
Query 1395 GTACAGTAAGATCTTCGGCTCAGAGGAAGAC------------------------------------------- 1425
|||||||||||||||||||||||||||||||
Sbjct 2517 GTACAGTAAGATCTTCGGCTCAGAGGAAGACTGACAGACAAGACAAGCTACTGAATACGTTCACATCTGTCTTG 2590
Query 1426 -------------------------------------------------------------------------- 1425
Sbjct 2591 ATGCCTAATATTTTTACATTTCTGTAAACATATTTCTGAAATATTTTTTGCCTTTCAAGCGACAGATGCCTCAT 2664
Query 1426 ------------------------------------------------------------------ 1425
Sbjct 2665 TTTGTGAAAACTTAATGATGATTTTGTGTTTAAGTTCCAAACATTTGAATAAAATAATTGACAATA 2730
