Nucleotide Global Alignment

Description

Query:
TRCN0000474398
Subject:
XR_001779502.1
Aligned Length:
2585
Identities:
1143
Gaps:
1245

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GGGGCGGGACCTGCCATTCGAGGGGGCGGGGCCGTGAGCAGAGCTGGACAGAGCTGAAGCGAAGCACTCAACCC  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  TCTGCAGCCCTGGTACCTACCCACTCCCGCCGCCCGCCTGGCAATCGCTCGCTCCTCTACATCATGCTGTGGCG  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  GGGTAGCCAGGCGCTACGGCACTTCTCCACCAGCCGGGTTTATTTCAAAAACAAGCTGAAGTTGGCACTTATTG  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  GCCAGAGCCTGTTCGGACAGGAAGTCTATAGCCAGCTCCTGAAAGAGGGCCACCGAGTAGTGGGAGTGTTCACA  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  GTGCCAGACAAGGATGGAAAGGCCGATCCACTGGCTTTGGCTGCAGAGAAAGATGGGACTCCCGTGTTCAAGTT  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  CCCTCGATGGAGACTCAAGGGTAAAACCATCAAGGAGGTAGCAGAAGCTTACCAGTCGGTGGGAGCCGAGCTCA  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  ACGTGCTCCCCTTCTGCACACAGTTCATCCCCATGGATGTCATTGACAGCCCAAAGCATGGCTCCATCATCTAC  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  CACCCCTCACTCCTACCCAGGCACAGAGGAGCTTCTGCCATCAACTGGACACTAATCATGGGAGATAAGAAAGC  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  TGGGTTTTCTGTTTTCTGGGCAGATGATGGTTTGGATACAGGACCCATCCTTCTTCAGAGATCGTGTGACGTCA  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  AGCCCAATGACACAGTGGACTCGCTTTATAACCGGTTCCTTTTTCCTGAGGGGATCAAGGCCATGGTAGAAGCC  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  GTCCAACTCATAGCTGATGGAAAAGCGCCTCGCACTCCCCAGCCAGAAGAGGGGGCAACATATGAAGGCATCCA  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  GAAGAAGGAGAACGCTGAGGTTTCTTGGGACCAGCCTGCTGAAGGTTTGCATAACTGGATTCGAGGTCATGACA  888

Query    1  -----------------------------------ATGGTCACTTTCTATGGCTCGACATTACTGAATAGCTCT  39
                                               |||||.||||||||.|||||..||.|..|||.|||.|||
Sbjct  889  AGGTCCCTGGAGCCTGGGCAGAGATCAATGGACAGATGGTGACTTTCTACGGCTCATCACTGTTGACTAGTTCT  962

Query   40  GTGCCTCCTGGAGAACCACTGGAAATTAAAGGTGCCAAGAAGCCTGGTCTCGTTACCAAAAATGGACTTGTTCT  113
            ||||||.||||||||||||||||.||||.|||||||||||||||.|||||.||.|||||||||||.|||||.||
Sbjct  963  GTGCCTTCTGGAGAACCACTGGACATTAGAGGTGCCAAGAAGCCCGGTCTTGTCACCAAAAATGGCCTTGTCCT  1036

Query  114  TTTTGGTAACGATGGAAAAGCACTGACGGTGAGAAATCTGCAGTTTGAAGATGGAAAAATGATCCCTGCCTCTC  187
            ||||||.||.||||||||||||||||.|||||||||.|||||||||||.||.|||||.|||||.||.|||||.|
Sbjct 1037  TTTTGGGAATGATGGAAAAGCACTGATGGTGAGAAACCTGCAGTTTGAGGACGGAAAGATGATTCCAGCCTCCC  1110

Query  188  AGTACTTTTCAACGGGTGAGACGTCAGTGGTAGAACTGACAGCTGAAGAGGTGAAAGTGGCAGAGACCATCAAG  261
            ||||||||||..||||||||||.||||||||||||||.||.||.||.|||.||||.||||||||||||||.|||
Sbjct 1111  AGTACTTTTCTGCGGGTGAGACATCAGTGGTAGAACTTACGGCCGAGGAGCTGAAGGTGGCAGAGACCATTAAG  1184

Query  262  GTCATCTGGGCTGGAATTTTAAGCAATGTCCCCATTATTGAAGACTCAACAGACTTCTTTAAATCTGGAGCAAG  335
            ||||||||||||.|||||||||||||...|||..|.|||||.|||||.||.||||||||||||||||||||.||
Sbjct 1185  GTCATCTGGGCTCGAATTTTAAGCAACACCCCTGTGATTGAGGACTCCACGGACTTCTTTAAATCTGGAGCGAG  1258

Query  336  CTCAATGGATGTTGCCAGGCTGGTTGAAGAGATCAGACAGAAATGTGGTGGGCTTCAGTTGCAGAATGAAGATG  409
            ||||||||||||||..||||||||.||||||||||||||||..||.||.|||||||||.|||||||||||||.|
Sbjct 1259  CTCAATGGATGTTGTGAGGCTGGTGGAAGAGATCAGACAGAGTTGCGGAGGGCTTCAGCTGCAGAATGAAGACG  1332

Query  410  TCTATATGGCCACCAAGTTTGAAGGCTTTATCCAAAAGGTCGTGAGGAAACTGAGAGGAGAAGATCAAGAGGTG  483
            ||||.||||||||||||||||.||..||.|||||||||||.|||.|||.||||||||||||.||..||||||..
Sbjct 1333  TCTACATGGCCACCAAGTTTGGAGATTTCATCCAAAAGGTTGTGCGGAGACTGAGAGGAGAGGACGAAGAGGCA  1406

Query  484  GAGCTGGTTGTAGATTATATTTCAAAGGAGGTCAATGAAATCATGGTAAAAATGCCATACCAGTGTTTCATAAA  557
            |||.||||.||.|||||..||||.||||||||.||.|..||.|..||.|||||.||.|||||||||||||||||
Sbjct 1407  GAGATGGTGGTGGATTACGTTTCCAAGGAGGTGAACGGGATGACAGTGAAAATCCCCTACCAGTGTTTCATAAA  1480

Query  558  TGGACAGTTCACAGATGCAGACGATGGAAAGACTTACGACACTATCAACCCAACAGATGGATCTACAATATGCA  631
            |||||||||....|||||.||.||||||.|||||||||.||||.|||||||.|||||||||.||||||||||||
Sbjct 1481  TGGACAGTTTGTGGATGCCGAGGATGGAGAGACTTACGCCACTGTCAACCCCACAGATGGAACTACAATATGCA  1554

Query  632  AAGTATCCTACGCTTCTTTGGCGGATGTTGATAAAGCAGTAGCAGCAGCAAAAGATGCTTTTGAAAACGGTGAA  705
            .|||.||||||||||||||.|||||||||||.|.|||||||||.|||||.||.||.||.|||||.|||||.|||
Sbjct 1555  GAGTGTCCTACGCTTCTTTAGCGGATGTTGACAGAGCAGTAGCCGCAGCCAAGGACGCCTTTGAGAACGGCGAA  1628

Query  706  TGGGGAAGAATGAATGCAAGAGAAAGAGGAAGATTGATGTATAGACTTGCAGACCTACTGGAAGAGAACCAAGA  779
            |||||.||.|||||.||.|||||.|||||||||.|.|||||.|||||.||.||||||.|||||||.||||||||
Sbjct 1629  TGGGGGAGGATGAACGCCAGAGACAGAGGAAGACTCATGTACAGACTCGCTGACCTAATGGAAGAAAACCAAGA  1702

Query  780  AGAGCTGGCAACTATTGAAGCCCTTGATTCAGGGGCTGTCTATACCTTGGCCCTGAAGACACACATTGGAATGT  853
            |||||||||.||.||.|||||.||.|||||.|||||||||||.|||.||||.||||||||.|||||||||||||
Sbjct 1703  AGAGCTGGCCACCATAGAAGCGCTGGATTCCGGGGCTGTCTACACCCTGGCTCTGAAGACTCACATTGGAATGT  1776

Query  854  CTGTGCAAACATTCAGATATTTTGCTGGCTGGTGCGACAAAATTCAGGGTTCTACTATTCCAATCAACCAGGCC  927
            |||||||.||.||||||||.||.||.||||||||.||||||||||||||||||||.||||||||||||||||||
Sbjct 1777  CTGTGCAGACGTTCAGATACTTCGCAGGCTGGTGTGACAAAATTCAGGGTTCTACAATTCCAATCAACCAGGCC  1850

Query  928  CGTCCAAATCGCAATCTGACCTTCACCAAGAAAGAGCCACTCGGTGTCTGTGCCATTATTATTCCCTGGAACTA  1001
            ||.||.|||..|||.|||||||||||||||||.||||||||.||||.||||||||||||.|||||.||||||||
Sbjct 1851  CGGCCGAATTACAACCTGACCTTCACCAAGAAGGAGCCACTTGGTGCCTGTGCCATTATCATTCCTTGGAACTA  1924

Query 1002  CCCGCTGATGATGCTGGCATGGAAGAGTGCTGCGTGTTTGGCAGCAGGCAATACCTTAGTGCTCAAGCCAGCAC  1075
            |||.||||||||||||||.||||||||.||.|||||..||||.||||||||.|||.|.|||||||||||.||||
Sbjct 1925  CCCACTGATGATGCTGGCCTGGAAGAGCGCAGCGTGCCTGGCGGCAGGCAACACCCTGGTGCTCAAGCCTGCAC  1998

Query 1076  AGGTCACGCCCTTGACTGCTTTGAAGTTTGCAGAACTGTCTGTGAAAGCAGGCTTTCCAAAGGGGGTCATCAAC  1149
            |||||||.||||||||.|||.|||||||||||||.|||.|.||||||||.||||||||.||||||||.||.|||
Sbjct 1999  AGGTCACACCCTTGACGGCTCTGAAGTTTGCAGAGCTGACCGTGAAAGCTGGCTTTCCCAAGGGGGTGATTAAC  2072

Query 1150  ATCATTCCAGGCTCAGGTGGCATAGCAGGACAACGTCTGTCTGAACATCCTGACATCCGCAAACTTGGTTTCAC  1223
            |||||||||||||||||.||..|.||||||||..|.||.|||.|.||.||||||||||||||.|||||.|||||
Sbjct 2073  ATCATTCCAGGCTCAGGGGGTGTCGCAGGACAGAGGCTCTCTCAGCACCCTGACATCCGCAAGCTTGGCTTCAC  2146

Query 1224  TGGATCCACTCCTATTGGCAAACAGATCATGAAGAG--------------------------------------  1259
            |||||||||..|..|.|||||||||||||||||.||                                      
Sbjct 2147  TGGATCCACCTCAGTGGGCAAACAGATCATGAAAAGAAAACCTCTAAAATAACAAAAGGAGCCAAAAAGAACAT  2220

Query 1260  --------------------------------------------------------------------------  1259
                                                                                      
Sbjct 2221  GAACGTCGGCACCCTTACTGCCCAGCCTTAGCAGTGGACCGGCTCCTCTCCTGACTCCTTCCTCTGACCTTCCC  2294

Query 1260  --------------------------------------------------------------------------  1259
                                                                                      
Sbjct 2295  TTGCCTTCTTTGAGACATGGTTTTCCATTCTTCTGCCTCCACTTTCTGAATGCTGGAATTACATGCACTGCCAT  2368

Query 1260  ------------CTGTGCTGTTAGCAACTTGAAGAAAGTTTCCCTTGAGCTTGGTGGCAAGTCTCCACTTATAA  1321
                        |||||||||.||||||.|||||||||||||||||||||||||||||||.||.|||||.||||
Sbjct 2369  GTCCTCATAAGTCTGTGCTGTGAGCAACCTGAAGAAAGTTTCCCTTGAGCTTGGTGGCAAATCCCCACTGATAA  2442

Query 1322  TATTTAATGACTGTGAACTTGACAAGGCTGTGCGAATGGGCATGGGAGCAGTATTTTTCAACAAAGGAGAGAAC  1395
            ||||.|.|||.|||||.||                                                       
Sbjct 2443  TATTCAGTGATTGTGACCT-------------------------------------------------------  2461

Query 1396  TGTATTGCTGCTGGGCGGTTGTTCGTGGAAGAATCCATCCACGACGAATTTGTGACAAGAGTGATCCAC  1464
                                                                                 
Sbjct 2462  ---------------------------------------------------------------------  2461

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.