Nucleotide Global Alignment
Description
- Query:
- TRCN0000474412
- Subject:
- XR_001781873.1
- Aligned Length:
- 5828
- Identities:
- 1282
- Gaps:
- 4386
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 AAGGCCCGCCTTCCGCTCGCCCGCGCGGCAGCGGGTCTCAAGAGCCGAGCGCTTTGCAAGGGCCTTCGCGGGTT 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GTGGCGGCGCCGGGGTCGGTGAGGGTCGACCGGCTGTGGTCGGGCTGCGGGCGGCTCGGGCAGGTCGCGGGCGC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CACAGGTGGAAGAAGAAAGGTGCCACTTTGGCATGAAGATAGACTCACTTAGACGTCAATCTTTTAAGCTGAGT 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GCATTGTGATTTCCAATAATTGAGGCAGTGGTTCTAAAAGCTGTCTACATTAATGAAAAGAGCAATGTGGCCAG 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 CTTGACTAAGCCGCCAGTGTGTACAGCGCGGGCAGGACGACACCGGGTCTCGACGGACTTGTGCATGTTAGCAG 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 TATAGATTTATGTAAGGTGGTTTAAAACTCTGGTCTTTTAAAGTAGTCTTAACTGCTCATAATATGGAGACATA 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 TGAGAGTCCCTCTCCTCTCCCGCGTGAGCCCGCAGGAGAAGCGATGATGGAGAACCGAGCTTGCCCCTTCCAAG 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 TGCTGCCCCATGAACAGTCTCCACCACCTCCCCTGCAAACGTCCAGTGATGCAGAGGTAATGGACGTTGGCTCT 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 GGTGGTGATGGACAGTCCGAACCTCCTGCCGACGACCCATTCAACTTCTACGGAGCTTCTCTTCTCTCCAAAGG 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 ATCCTTCTCTAAGGGCCGCCTCCTCATAGACCCGAACTGTAGTGGCCACAGCCCGCGCACTGCCCGGCACGCAC 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 CTGCGGTCCGGAAGTTCTCCCCTGACCTTAAGTTGCTTAAGGATGTAAAGATTAGCGTGAGCTTTACTGAGAGC 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 TGCAGGAGTAAGGACAGGAAGGTGCTGTACACAGGAGTAGAACGCAGCACTCGGCCTGAGTGTGGCCAGCTCCT 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 TAGTCCTGTCAGTGGGGACGTGCATGCTTGTCCCTTTGGCGGGAGTGTTGGTAATGGGGTAGGCCTAGGGGGTG 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 AGAGTGCAGATAAGAAGGATGAGGAAAATGAGCTGGATCAGGAAAAGAGAGTGGAGTATGCAGTGCTCGATGAG 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 TTAGAAGATTTTACTGACAATTTGGAGCTAGATGAAGAAGGAACAGGCGGGTTCACGGCTAAAGCAATCGTTCA 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 AAGAGACAGAGTGGATGAAGAGGCCTTGAATTTCTCCTATGAGGATGACTTTGACAATGATGTGGACGCTTTAC 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 TAGAAGAAGGTCTCTGTGCTCCCAAGAAGAGGCGAATGGAGGAAAAATATGGCGGAGACAGTGATCATCCATCT 1258
Query 1 ------------------------ATGATGACCAAGATTAAAACAGTGCTCAAAAGTCGTGGCCGCCCACCTAC 50
|||||||||||||||||||||||||||||||||||||||||.||||||||
Sbjct 1259 GATGGAGAGACAAGTGTACAGCCAATGATGACCAAGATTAAAACAGTGCTCAAAAGTCGTGGCCGTCCACCTAC 1332
Query 51 AGAGCCGCTGCCCGACGGGTGGATCATGACATTCCATAACTCTGGAGTCCCGGTGTACCTACACAGAGAGTCTC 124
||||||..||||.||.||.|||||||||||.||.|||||.|||||||||||.||.|||||.|||||||||||||
Sbjct 1333 AGAGCCATTGCCTGATGGATGGATCATGACTTTTCATAATTCTGGAGTCCCTGTATACCTGCACAGAGAGTCTC 1406
Query 125 GGGTGGTCACCTGGTCCAGGCCATACTTCTTGGGAACGGGAAGCATACGGAAACACGACCCTCCTCTGAGTAGC 198
|.||||||||.||||||||.||.||||||||||||||.|||||||||||||||||.||.||||||||.||.||.
Sbjct 1407 GAGTGGTCACTTGGTCCAGACCCTACTTCTTGGGAACAGGAAGCATACGGAAACATGATCCTCCTCTAAGCAGT 1480
Query 199 ATCCCTTGTCTGCATTATAAGAAAATGAAGGACAACGAGGAACGGGAGCAAAGCAGTGACCTCACCCCTAGTGG 272
|||||.||.||.|||||||||||||||||||||||.||||||||.||.||||.|.||||.||..||||.|||||
Sbjct 1481 ATCCCCTGCCTACATTATAAGAAAATGAAGGACAATGAGGAACGAGAACAAAACTGTGATCTTGCCCCCAGTGG 1554
Query 273 GGATGTGTCCCCCGTCAAGCCCCTGAGCCGATCTGCAGAGCTGGAGTTTCCC-CTGGATGAGCCTGACTCTATG 345
.||.|||||.||.|||||||||.||.|.||.|||||||||.|||| |||||| |||||.|||||||||||.|||
Sbjct 1555 AGAGGTGTCACCTGTCAAGCCCTTGGGTCGGTCTGCAGAGTTGGA-TTTCCCTCTGGAAGAGCCTGACTCCATG 1627
Query 346 GGTGCTGACCCGGGGCCCCCGGACGAGAAAGACCCACTAGGGGCTGAGGCAGCCCCTGGGGCCCTGGGGCAGGT 419
||||..|||.|.|||.||..|||.|||||.||||||.|.|||||||||||||||.||||.||||||||.||.||
Sbjct 1628 GGTGGAGACTCAGGGTCCATGGATGAGAAGGACCCATTGGGGGCTGAGGCAGCCGCTGGAGCCCTGGGACAAGT 1701
Query 420 GAAGGCCAAAGTCGAGGTGTGCAAAGATGAATCCGTTGATCTCGAGGAATTTCGAAGCTACCTGGAGAAGCGTT 493
||||||.|||||.||||||||||||||||||||.||||||||.|||||||||||.|..|||||.||||||||||
Sbjct 1702 GAAGGCTAAAGTTGAGGTGTGCAAAGATGAATCAGTTGATCTGGAGGAATTTCGTAATTACCTTGAGAAGCGTT 1775
Query 494 TTGACTTTGAGCAAGTTACTGTGAAAAAATTCAGGACTTGGGCTGAGCGGCGGCAATTCAATCGGGAAATGAAG 567
||||||||||.|||||.|||||||||||||||||||||||||||||||||||.||.|||||.||.||.||||||
Sbjct 1776 TTGACTTTGAACAAGTAACTGTGAAAAAATTCAGGACTTGGGCTGAGCGGCGTCAGTTCAACCGTGAGATGAAG 1849
Query 568 CGGAAGCAGGCGGAGTCCGAGAGGCCCATCTTGCCAGCCAATCAGAAGCTCATTACTTTATCAGTGCAAGATGC 641
|||||||||||.|||||.||||||||||||.||||||||||.||||||||.||.|||.||||.||.||||||||
Sbjct 1850 CGGAAGCAGGCCGAGTCAGAGAGGCCCATCCTGCCAGCCAACCAGAAGCTGATCACTCTATCTGTACAAGATGC 1923
Query 642 ACCCACAAAGAAAGAGTTTGTTATTAACCCCAACGGGAAATCCGAGGTCTGCATCCTGCACGAGTACATGCAGC 715
|||||||||||||||||||||.||.||.|||||.|||||.||.|||||.||||||||||||||.||||||||||
Sbjct 1924 ACCCACAAAGAAAGAGTTTGTCATCAATCCCAATGGGAAGTCTGAGGTTTGCATCCTGCACGAATACATGCAGC 1997
Query 716 GTGTCCTCAAGGTCCGCCCTGTCTATAATTTCTTTGAATGTGAGAACCCAAGTGAGCCTTTTGGTGCCTCGGTG 789
||||||||||||||||||||||.|||||||||||||||||||||||.|||||||||||||||||||||||.|||
Sbjct 1998 GTGTCCTCAAGGTCCGCCCTGTTTATAATTTCTTTGAATGTGAGAATCCAAGTGAGCCTTTTGGTGCCTCCGTG 2071
Query 790 ACCATTGATGGTGTGACTTACGGATCTGGAACTGCAAGCAGCAAAAAACTTGCGAAGAATAAAGCTGCCCGAGC 863
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2072 ACCATTGATGGTGTGACTTACGGATCTGGAACTGCAAGCAGCAAAAAACTTGCGAAGAATAAAGCTGCCCGAGC 2145
Query 864 TACACTGGAAATCCTCATCCCTGACTTTGTTAAACAGACCTCTGAAGAGAAGCCCAAAGACAGTGAAGAACTCG 937
.||.||||||||.||||||||||||||||||||||||||||||||.||||||||.|||||||||||||||||.|
Sbjct 2146 CACCCTGGAAATTCTCATCCCTGACTTTGTTAAACAGACCTCTGAGGAGAAGCCTAAAGACAGTGAAGAACTGG 2219
Query 938 AG---------------------------------------------------------------TATTTTAAC 948
|| |||||||||
Sbjct 2220 AGATTCTCTTCTGCTTTCAAGAAGCTCTGTTTGGCCTTCAGTTGGATGAGTCTACAAACAGATGCTATTTTAAC 2293
Query 949 CACATCAGCATCGAGGACTCGCGGGTCTACGAGCTGACCAGCAAGGCTGGGCTGTTGTCTCCATATCAGATCCT 1022
||||||||.||.|||||.||.||.|||||.||||||||.|||||||||||||||||||||||||||||||||||
Sbjct 2294 CACATCAGTATTGAGGATTCACGAGTCTATGAGCTGACAAGCAAGGCTGGGCTGTTGTCTCCATATCAGATCCT 2367
Query 1023 CCACGAGTGCCTTAAAAGAAACCATGGGATGGGTGACACGTCTATCAAGTTTGAAGTGGTTCCTGGGAAAAACC 1096
|||.|||||||||||||||||||||||.|||||||||||.||.|||||||||||||||||||||||||||||||
Sbjct 2368 CCATGAGTGCCTTAAAAGAAACCATGGAATGGGTGACACATCCATCAAGTTTGAAGTGGTTCCTGGGAAAAACC 2441
Query 1097 AGAAGAGTGAATACGTCATGGCGTGTGGCAAGCACACAGTGCGCGGGTGGTGTAAGAACAAGAGAGTTGGAAAG 1170
|||||||||||||.||.|||||.||.|||||.||||||||||||||||||||||||||.||..|||||||.||.
Sbjct 2442 AGAAGAGTGAATATGTTATGGCATGCGGCAAACACACAGTGCGCGGGTGGTGTAAGAATAAACGAGTTGGGAAA 2515
Query 1171 CAGTTAGCCTCACAGAAGATCCTTCAGCTGCTGCACCCACATGTCAAGAACTGGGGGTCTTTACTGCGCATGTA 1244
||.|||||.||.|||||.|||||||||||.||||||||||||||||||||||||||.||.|||||.||||||||
Sbjct 2516 CAATTAGCATCTCAGAAAATCCTTCAGCTACTGCACCCACATGTCAAGAACTGGGGTTCCTTACTACGCATGTA 2589
Query 1245 TGGCCGTGAGAGCAGCAAGATGGTCAAGCAGG-----AG------ACATC----GGACAAGAGT---------- 1293
|||.||||||||||||||.||||||||||||| || ||||| || .|||
Sbjct 2590 TGGTCGTGAGAGCAGCAAAATGGTCAAGCAGGTAACCAGACTGTCACATCTTTTGG----CAGTTGCTCTGCTT 2659
Query 1294 --GTGATTGAGCT---------------------------------GCAGCAGTA------------------- 1313
.||.||..||| ||||||.||
Sbjct 2660 CCCTGTTTTTGCTTTGGCTTGGGGCTTGCTGTCAAGGTCAGGCTTGGCAGCACTACTTTTAATTATGACTGTCT 2733
Query 1314 ----------------TGCCA-AGAAG---------AA--CAAG----------CCCAACCTGCACA---TCCT 1346
|||.| .|||| || |||| |||||.| |||| ||||
Sbjct 2734 CTGCTGTGCTGTGCTGTGCTATGGAAGTGATTGTGCAAGCCAAGGGTGGGAGTACCCAAGC--CACATTTTCCT 2805
Query 1347 CAGCAAGCT-CCAAGAGGAGATGAAGAGGCTAGCTGAG---GAA-----AGGGAG------GAGACT------- 1398
||..||.|| || |||| ||.|.|| ||| |||||| .|||||
Sbjct 2806 CATGAATCTGCC--------------AGGC-AGTTAAGTATGAACCATTAGGGAGCAGTCCTAGACTATCAGGC 2864
Query 1399 -CGAAAGAAGCC---CA--AGATG------------------------TCCATTGT-----GGCGTCCGC---C 1434
.||.|.||.|| || ||||| |..||||| |||.| || |
Sbjct 2865 CTGACACAAACCAGACAGTAGATGCAGGCAGTGAACACTACCTGATGTTGAATTGTGTGAAGGCTT--GCAAAC 2936
Query 1435 CAGCC---TGGCGGTGAGCC------------CCT-------------GTGCACCGTGGACGTG---------- 1470
||||| ||||.|| || ||| ||.|.|.|| |||.|.
Sbjct 2937 CAGCCCTTTGGCAGT---CCTCAAGACTGTATCCTTGTTTAGTTGAAGGTTCTCAGT-GACTTAAAGAATATGG 3006
Query 1471 -------------------------------------------------------------------------- 1470
Sbjct 3007 GTATTATCTGTTTTGTTTCTGAGGGTTTTGCCCAGATCTCAGAATTTAAATAAGTCTAAACCTAATGGGTATGG 3080
Query 1471 -------------------------------------------------------------------------- 1470
Sbjct 3081 GAAGTAATGGGAAATTATGTTGGGTAGTGATGGAACTCAGCTGTATCACAAGCATTTTTTTACATTTTCCCCTA 3154
Query 1471 -------------------------------------------------------------------------- 1470
Sbjct 3155 ATATATGCCGAAACTACCTGGATCATCAGGATCTCATTGTTTAAACGAGTACAGGTAGAGACCCTGAAGTCTGT 3228
Query 1471 -------------------------------------------------------------------------- 1470
Sbjct 3229 GCTCTGGACCCTTGAGCTACCCTGCCTTGAGCTGAGCTAATAGTCTAGAGCAACGAAGCACCCCTTCAGATTCT 3302
Query 1471 -------------------------------------------------------------------------- 1470
Sbjct 3303 CCAAGACTCAAACTTGTCCCTGTCCTTGCTCAAGGCAGGAGGAGTCCAGGAGCCACATGGAGAACGTAAATAAT 3376
Query 1471 -------------------------------------------------------------------------- 1470
Sbjct 3377 ATAAGAGTACTTCTTTTTTCTGATTCCTCTCCCTCCTACTGCTGGGGATCATACATGGGGCTTTGTACAGGCCA 3450
Query 1471 -------------------------------------------------------------------------- 1470
Sbjct 3451 AACAAGGACTGAGTTGCATCTTCAGCCTGAAAAGAAGCATTTTTCATGAGTTGAAATGTAGGTACCGTGTAGGT 3524
Query 1471 -------------------------------------------------------------------------- 1470
Sbjct 3525 ACGTAGTCTGGGACTGAGACAGAGGGAACGTTGCTGCAACCATGGACAGAGGTTTCCTTCAACTGGAGAGTGAA 3598
Query 1471 -------------------------------------------------------------------------- 1470
Sbjct 3599 TGGCCCTTGTCTGGCACAGGAGTTCTGGCATTCTAAGACATAGTGAGCATCCTTACTGTGGCCTCCAAGCCAAG 3672
Query 1471 -------------------------------------------------------------------------- 1470
Sbjct 3673 AAGGGAAGAGAACCAAAGAGAACAGCTGGGCAGACTGTTTTGGTTGTGTTATGTCTCAGTTGGCTTCAGCCACT 3746
Query 1471 -------------------------------------------------------------------------- 1470
Sbjct 3747 GTCAGAGGGTTCCTGGCATAGTGAGTACTTGACTTTCATACTCAGCTAGTAAACACACAGAGGTGTGATCATGG 3820
Query 1471 -------------------------------------------------------------------------- 1470
Sbjct 3821 AGGAAGGAAGGAACTGTCTGGGAGACCAGGGAGCACAGGGCTGTGCTTATACCCTATATTTATATGTCAGCTGC 3894
Query 1471 -------------------------------------------------------------------------- 1470
Sbjct 3895 AAATGCTTTATCACAGGTAGGCCACTGGTGTGGACTTGTGCCTTGCCAAGCCCTTGCACTCTTGATTTGGGTGG 3968
Query 1471 -------------------------------------------------------------------------- 1470
Sbjct 3969 ATACTGCTACTTGAGCATACTGCTACTTGGCAGTTCTGAGAGCAGGCTTTGGGTCCCTAGGAGACCTCTGACAA 4042
Query 1471 -------------------------------------------------------------------------- 1470
Sbjct 4043 GAGTGTGATAGAGCTACAGCAGTATGCCAAGAAGAACAGGCCCAACCTTCACATCCTGAGCAAGCTACAAGAAG 4116
Query 1471 -------------------------------------------------------------------------- 1470
Sbjct 4117 AGATGAAGAGGCTGGCTGCAGAGCGGGAGGAGACTCGGAAGAAACCCAAGATGTCAATTGTAGCATCTGCCCAG 4190
Query 1471 -------------------------------------------------------------------------- 1470
Sbjct 4191 CCTGGTGGTGAGCCCTTGTGCACAGTCGATGTATGAGGTAGGCAGCATGGGCCAACAGTGCTACCCAGGAGAGA 4264
Query 1471 -------------------------------------------------------------------------- 1470
Sbjct 4265 CCATCAGCCACACATCATCACTCTGCAGCTCCAGGCCTCCAACCTAAGTTCCTTCCCTGTGGCAGGGTCTGGGC 4338
Query 1471 -------------------------------------------------------------------------- 1470
Sbjct 4339 TCTGGCTCTGGCACATGGGGACAGCTGTGACTACACAGTACACATGCAAAGAAGCAGTTCTGGACAAGCTGCTC 4412
Query 1471 -------------------------------------------------------------------------- 1470
Sbjct 4413 TCAATGTGACTGGATATACTTAAGGATCAGTCATAAGTTAACTGCACAAGTGGAAGCTGATAGACAGCTGTAGA 4486
Query 1471 -------------------------------------------------------------------------- 1470
Sbjct 4487 TCCTGCTTGTATGTATCTGCTGCGGACCGTTTTTATGAAGGTTTTCATTAATTTTAGTACACTATATGCACTGA 4560
Query 1471 -------------------------------------------------------------------------- 1470
Sbjct 4561 CAAGAAGTAATACTTCGTTGATAGATGAGATGACCAGGTTTTATAGCTTTGGCTGGCCTATGATGCCAGGTAGC 4634
Query 1471 -------------------------------------------------------------------------- 1470
Sbjct 4635 CCCTTTGCTATGGTTCTTTCTGGTGGAGCCACTGAGACTTGGTCAGAAGATGCAGGTATCCTGTCCTGTAGAAT 4708
Query 1471 -------------------------------------------------------------------------- 1470
Sbjct 4709 TACCTGCTTTGTGTGTTTTGCATTTTCTTCTGAAAAAGTTATAACAGAAAGGAATATTTCAGGCTATTTTGGCT 4782
Query 1471 -------------------------------------------------------------------------- 1470
Sbjct 4783 TAAAATAAAACAAAATTTTAGCACCAGAAATACTCTTCCGAGATTGCAGTGAAGATACTGAGTGTTAGTCCGAT 4856
Query 1471 -------------------------------------------------------------------------- 1470
Sbjct 4857 TGATCCTTTTTCTTATGAAGTCTTAATGTCCTAACAGCCGTCTTCTGGATACTGAAGCTTCCACCTTCGATAAA 4930
Query 1471 -------------------------------------------------------------------------- 1470
Sbjct 4931 CTTAGCAACAATTTTTTACAGAGATTTTTGCACAACCAAGCCCATCTGTTCATCAATTTTTAAAGCTTTTATGA 5004
Query 1471 -------------------------------------------------------------------------- 1470
Sbjct 5005 TGTTTTAAAATTTGGAAAGAAACTTTTACAGTAAGAATGAAAGATGCATTTCAACAGATGAATATGCATAAATA 5078
Query 1471 -------------------------------------------------------------------------- 1470
Sbjct 5079 GGGAACTGGCCTTCAATGTAGCCCATCACTGACCAAGAGCTGCCTGGCACATTGTACACGATAAGTAGTTATGG 5152
Query 1471 -------------------------------------------------------------------------- 1470
Sbjct 5153 TGTTTTTTGATCTCAAGGATAGCTGCTCTGTGCAGCCAGGCCTGATTGCAGGTTTTTGTCTACCTATGCTCATT 5226
Query 1471 -------------------------------------------------------------------------- 1470
Sbjct 5227 GGATAGCCCCTGTAAATGGGTATTGAGTAGAGGGGTATTCAGAGCCCTATTACCTGTTCAGAGGGGCTACACTC 5300
Query 1471 -------------------------------------------------------------------------- 1470
Sbjct 5301 TACATCCTCAGTGTCTCTAACCATGTACCTGAAGATACATGGGTGACATGTGCTGTTAGAAAGATAAGATGGCA 5374
Query 1471 -------------------------------------------------------------------------- 1470
Sbjct 5375 ACTGTGGGCCTCCCAACAGCATCTTCCTCCTCCTTAATCATGTGTGTGACAGCAGTTAATGTTTATGTTAATCT 5448
Query 1471 -------------------------------------------------------------------------- 1470
Sbjct 5449 TGGCAAAAAGAACCCTTAATTCAAGTTGGTAGACTTGGACACTTGATTCTTTTCTGCCTCCCATTCAGTTGTGT 5522
Query 1471 -------------------------------------------------------------------------- 1470
Sbjct 5523 TCAGTCTTTTGACTAACCATTGCCCTTAAAACATACTTAACATTGAAAAAGCATATGGTAATGGTGGTATCTCT 5596
Query 1471 -------------------------------------------------------------------------- 1470
Sbjct 5597 GCAGCCTCACCGACCCAGGCACTGTCAACAGGTGCTGCCACACATTCCTGGTCTCCAGTGCCCTCCCTGTCTCT 5670
Query 1471 -------------------------------------------------------------------------- 1470
Sbjct 5671 TACAGGTGGGTCTTATATGTACAGTCATGCTGCAAGGGTGGGGAGCCTGTGCTGATGTGCTTCTGTGTGTTGGC 5744
Query 1471 -------------------------------------------------------- 1470
Sbjct 5745 CAAGGCTGTAGGGTGTACCCTGATGGTCTGAACACATAAAACTGTCCAAAAGGGAA 5800
