Nucleotide Global Alignment
Description
- Query:
- TRCN0000474412
- Subject:
- XR_001781877.1
- Aligned Length:
- 5752
- Identities:
- 1282
- Gaps:
- 4310
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 TCCGCTCGCCCGCGCGGCAGCGGGTCTCAAGAGCCGAGCGCTTTGCAAGGGCCTTCGCGGGTTGTGGCGGCGCC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GGGGTGGAAGAAGAAAGGTGCCACTTTGGCATGAAGATAGACTCACTTAGACGTCAATCTTTTAAGCTGAGTGC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 ATTGTGATTTCCAATAATTGAGGCAGTGGTTCTAAAAGCTGTCTACATTAATGAAAAGAGCAATGTGGCCAGCT 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 TGACTAAGCCGCCAGTGTGTACAGCGCGGGCAGGACGACACCGGGTCTCGACGGACTTGTGCATGTTAGCAGTA 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 TAGATTTATGTAAGGTGGTTTAAAACTCTGGTCTTTTAAAGTAGTCTTAACTGCTCATAATATGGAGACATATG 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 AGAGTCCCTCTCCTCTCCCGCGTGAGCCCGCAGGAGAAGCGATGATGGAGAACCGAGCTTGCCCCTTCCAAGTG 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 CTGCCCCATGAACAGTCTCCACCACCTCCCCTGCAAACGTCCAGTGATGCAGAGGTAATGGACGTTGGCTCTGG 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 TGGTGATGGACAGTCCGAACCTCCTGCCGACGACCCATTCAACTTCTACGGAGCTTCTCTTCTCTCCAAAGGAT 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 CCTTCTCTAAGGGCCGCCTCCTCATAGACCCGAACTGTAGTGGCCACAGCCCGCGCACTGCCCGGCACGCACCT 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 GCGGTCCGGAAGTTCTCCCCTGACCTTAAGTTGCTTAAGGATGTAAAGATTAGCGTGAGCTTTACTGAGAGCTG 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 CAGGAGTAAGGACAGGAAGGTGCTGTACACAGGAGTAGAACGCAGCACTCGGCCTGAGTGTGGCCAGCTCCTTA 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 GTCCTGTCAGTGGGGACGTGCATGCTTGTCCCTTTGGCGGGAGTGTTGGTAATGGGGTAGGCCTAGGGGGTGAG 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 AGTGCAGATAAGAAGGATGAGGAAAATGAGCTGGATCAGGAAAAGAGAGTGGAGTATGCAGTGCTCGATGAGTT 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 AGAAGATTTTACTGACAATTTGGAGCTAGATGAAGAAGGAACAGGCGGGTTCACGGCTAAAGCAATCGTTCAAA 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 GAGACAGAGTGGATGAAGAGGCCTTGAATTTCTCCTATGAGGATGACTTTGACAATGATGTGGACGCTTTACTA 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 GAAGAAGGTCTCTGTGCTCCCAAGAAGAGGCGAATGGAGGAAAAATATGGCGGAGACAGTGATCATCCATCTGA 1184
Query 1 ----------------------ATGATGACCAAGATTAAAACAGTGCTCAAAAGTCGTGGCCGCCCACCTACAG 52
|||||||||||||||||||||||||||||||||||||||||.||||||||||
Sbjct 1185 TGGAGAGACAAGTGTACAGCCAATGATGACCAAGATTAAAACAGTGCTCAAAAGTCGTGGCCGTCCACCTACAG 1258
Query 53 AGCCGCTGCCCGACGGGTGGATCATGACATTCCATAACTCTGGAGTCCCGGTGTACCTACACAGAGAGTCTCGG 126
||||..||||.||.||.|||||||||||.||.|||||.|||||||||||.||.|||||.||||||||||||||.
Sbjct 1259 AGCCATTGCCTGATGGATGGATCATGACTTTTCATAATTCTGGAGTCCCTGTATACCTGCACAGAGAGTCTCGA 1332
Query 127 GTGGTCACCTGGTCCAGGCCATACTTCTTGGGAACGGGAAGCATACGGAAACACGACCCTCCTCTGAGTAGCAT 200
||||||||.||||||||.||.||||||||||||||.|||||||||||||||||.||.||||||||.||.||.||
Sbjct 1333 GTGGTCACTTGGTCCAGACCCTACTTCTTGGGAACAGGAAGCATACGGAAACATGATCCTCCTCTAAGCAGTAT 1406
Query 201 CCCTTGTCTGCATTATAAGAAAATGAAGGACAACGAGGAACGGGAGCAAAGCAGTGACCTCACCCCTAGTGGGG 274
|||.||.||.|||||||||||||||||||||||.||||||||.||.||||.|.||||.||..||||.|||||.|
Sbjct 1407 CCCCTGCCTACATTATAAGAAAATGAAGGACAATGAGGAACGAGAACAAAACTGTGATCTTGCCCCCAGTGGAG 1480
Query 275 ATGTGTCCCCCGTCAAGCCCCTGAGCCGATCTGCAGAGCTGGAGTTTCCC-CTGGATGAGCCTGACTCTATGGG 347
|.|||||.||.|||||||||.||.|.||.|||||||||.|||| |||||| |||||.|||||||||||.|||||
Sbjct 1481 AGGTGTCACCTGTCAAGCCCTTGGGTCGGTCTGCAGAGTTGGA-TTTCCCTCTGGAAGAGCCTGACTCCATGGG 1553
Query 348 TGCTGACCCGGGGCCCCCGGACGAGAAAGACCCACTAGGGGCTGAGGCAGCCCCTGGGGCCCTGGGGCAGGTGA 421
||..|||.|.|||.||..|||.|||||.||||||.|.|||||||||||||||.||||.||||||||.||.||||
Sbjct 1554 TGGAGACTCAGGGTCCATGGATGAGAAGGACCCATTGGGGGCTGAGGCAGCCGCTGGAGCCCTGGGACAAGTGA 1627
Query 422 AGGCCAAAGTCGAGGTGTGCAAAGATGAATCCGTTGATCTCGAGGAATTTCGAAGCTACCTGGAGAAGCGTTTT 495
||||.|||||.||||||||||||||||||||.||||||||.|||||||||||.|..|||||.||||||||||||
Sbjct 1628 AGGCTAAAGTTGAGGTGTGCAAAGATGAATCAGTTGATCTGGAGGAATTTCGTAATTACCTTGAGAAGCGTTTT 1701
Query 496 GACTTTGAGCAAGTTACTGTGAAAAAATTCAGGACTTGGGCTGAGCGGCGGCAATTCAATCGGGAAATGAAGCG 569
||||||||.|||||.|||||||||||||||||||||||||||||||||||.||.|||||.||.||.||||||||
Sbjct 1702 GACTTTGAACAAGTAACTGTGAAAAAATTCAGGACTTGGGCTGAGCGGCGTCAGTTCAACCGTGAGATGAAGCG 1775
Query 570 GAAGCAGGCGGAGTCCGAGAGGCCCATCTTGCCAGCCAATCAGAAGCTCATTACTTTATCAGTGCAAGATGCAC 643
|||||||||.|||||.||||||||||||.||||||||||.||||||||.||.|||.||||.||.||||||||||
Sbjct 1776 GAAGCAGGCCGAGTCAGAGAGGCCCATCCTGCCAGCCAACCAGAAGCTGATCACTCTATCTGTACAAGATGCAC 1849
Query 644 CCACAAAGAAAGAGTTTGTTATTAACCCCAACGGGAAATCCGAGGTCTGCATCCTGCACGAGTACATGCAGCGT 717
|||||||||||||||||||.||.||.|||||.|||||.||.|||||.||||||||||||||.||||||||||||
Sbjct 1850 CCACAAAGAAAGAGTTTGTCATCAATCCCAATGGGAAGTCTGAGGTTTGCATCCTGCACGAATACATGCAGCGT 1923
Query 718 GTCCTCAAGGTCCGCCCTGTCTATAATTTCTTTGAATGTGAGAACCCAAGTGAGCCTTTTGGTGCCTCGGTGAC 791
||||||||||||||||||||.|||||||||||||||||||||||.|||||||||||||||||||||||.|||||
Sbjct 1924 GTCCTCAAGGTCCGCCCTGTTTATAATTTCTTTGAATGTGAGAATCCAAGTGAGCCTTTTGGTGCCTCCGTGAC 1997
Query 792 CATTGATGGTGTGACTTACGGATCTGGAACTGCAAGCAGCAAAAAACTTGCGAAGAATAAAGCTGCCCGAGCTA 865
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|
Sbjct 1998 CATTGATGGTGTGACTTACGGATCTGGAACTGCAAGCAGCAAAAAACTTGCGAAGAATAAAGCTGCCCGAGCCA 2071
Query 866 CACTGGAAATCCTCATCCCTGACTTTGTTAAACAGACCTCTGAAGAGAAGCCCAAAGACAGTGAAGAACTCGAG 939
|.||||||||.||||||||||||||||||||||||||||||||.||||||||.|||||||||||||||||.|||
Sbjct 2072 CCCTGGAAATTCTCATCCCTGACTTTGTTAAACAGACCTCTGAGGAGAAGCCTAAAGACAGTGAAGAACTGGAG 2145
Query 940 ---------------------------------------------------------------TATTTTAACCA 950
|||||||||||
Sbjct 2146 ATTCTCTTCTGCTTTCAAGAAGCTCTGTTTGGCCTTCAGTTGGATGAGTCTACAAACAGATGCTATTTTAACCA 2219
Query 951 CATCAGCATCGAGGACTCGCGGGTCTACGAGCTGACCAGCAAGGCTGGGCTGTTGTCTCCATATCAGATCCTCC 1024
||||||.||.|||||.||.||.|||||.||||||||.|||||||||||||||||||||||||||||||||||||
Sbjct 2220 CATCAGTATTGAGGATTCACGAGTCTATGAGCTGACAAGCAAGGCTGGGCTGTTGTCTCCATATCAGATCCTCC 2293
Query 1025 ACGAGTGCCTTAAAAGAAACCATGGGATGGGTGACACGTCTATCAAGTTTGAAGTGGTTCCTGGGAAAAACCAG 1098
|.|||||||||||||||||||||||.|||||||||||.||.|||||||||||||||||||||||||||||||||
Sbjct 2294 ATGAGTGCCTTAAAAGAAACCATGGAATGGGTGACACATCCATCAAGTTTGAAGTGGTTCCTGGGAAAAACCAG 2367
Query 1099 AAGAGTGAATACGTCATGGCGTGTGGCAAGCACACAGTGCGCGGGTGGTGTAAGAACAAGAGAGTTGGAAAGCA 1172
|||||||||||.||.|||||.||.|||||.||||||||||||||||||||||||||.||..|||||||.||.||
Sbjct 2368 AAGAGTGAATATGTTATGGCATGCGGCAAACACACAGTGCGCGGGTGGTGTAAGAATAAACGAGTTGGGAAACA 2441
Query 1173 GTTAGCCTCACAGAAGATCCTTCAGCTGCTGCACCCACATGTCAAGAACTGGGGGTCTTTACTGCGCATGTATG 1246
.|||||.||.|||||.|||||||||||.||||||||||||||||||||||||||.||.|||||.||||||||||
Sbjct 2442 ATTAGCATCTCAGAAAATCCTTCAGCTACTGCACCCACATGTCAAGAACTGGGGTTCCTTACTACGCATGTATG 2515
Query 1247 GCCGTGAGAGCAGCAAGATGGTCAAGCAGG-----AG------ACATC----GGACAAGAGT------------ 1293
|.||||||||||||||.||||||||||||| || ||||| || .|||
Sbjct 2516 GTCGTGAGAGCAGCAAAATGGTCAAGCAGGTAACCAGACTGTCACATCTTTTGG----CAGTTGCTCTGCTTCC 2585
Query 1294 GTGATTGAGCT---------------------------------GCAGCAGTA--------------------- 1313
.||.||..||| ||||||.||
Sbjct 2586 CTGTTTTTGCTTTGGCTTGGGGCTTGCTGTCAAGGTCAGGCTTGGCAGCACTACTTTTAATTATGACTGTCTCT 2659
Query 1314 --------------TGCCA-AGAAG---------AA--CAAG----------CCCAACCTGCACA---TCCTCA 1348
|||.| .|||| || |||| |||||.| |||| ||||||
Sbjct 2660 GCTGTGCTGTGCTGTGCTATGGAAGTGATTGTGCAAGCCAAGGGTGGGAGTACCCAAGC--CACATTTTCCTCA 2731
Query 1349 GCAAGCT-CCAAGAGGAGATGAAGAGGCTAGCTGAG---GAA-----AGGGAG------GAGACT--------C 1399
..||.|| || |||| ||.|.|| ||| |||||| .||||| .
Sbjct 2732 TGAATCTGCC--------------AGGC-AGTTAAGTATGAACCATTAGGGAGCAGTCCTAGACTATCAGGCCT 2790
Query 1400 GAAAGAAGCC---CA--AGATG------------------------TCCATTGT-----GGCGTCCGC---CCA 1436
||.|.||.|| || ||||| |..||||| |||.| || |||
Sbjct 2791 GACACAAACCAGACAGTAGATGCAGGCAGTGAACACTACCTGATGTTGAATTGTGTGAAGGCTT--GCAAACCA 2862
Query 1437 GCC---TGGCGGTGAGCC------------CCT-------------GTGCACCGTGGACGTG------------ 1470
||| ||||.|| || ||| ||.|.|.|| |||.|.
Sbjct 2863 GCCCTTTGGCAGT---CCTCAAGACTGTATCCTTGTTTAGTTGAAGGTTCTCAGT-GACTTAAAGAATATGGGT 2932
Query 1471 -------------------------------------------------------------------------- 1470
Sbjct 2933 ATTATCTGTTTTGTTTCTGAGGGTTTTGCCCAGATCTCAGAATTTAAATAAGTCTAAACCTAATGGGTATGGGA 3006
Query 1471 -------------------------------------------------------------------------- 1470
Sbjct 3007 AGTAATGGGAAATTATGTTGGGTAGTGATGGAACTCAGCTGTATCACAAGCATTTTTTTACATTTTCCCCTAAT 3080
Query 1471 -------------------------------------------------------------------------- 1470
Sbjct 3081 ATATGCCGAAACTACCTGGATCATCAGGATCTCATTGTTTAAACGAGTACAGGTAGAGACCCTGAAGTCTGTGC 3154
Query 1471 -------------------------------------------------------------------------- 1470
Sbjct 3155 TCTGGACCCTTGAGCTACCCTGCCTTGAGCTGAGCTAATAGTCTAGAGCAACGAAGCACCCCTTCAGATTCTCC 3228
Query 1471 -------------------------------------------------------------------------- 1470
Sbjct 3229 AAGACTCAAACTTGTCCCTGTCCTTGCTCAAGGCAGGAGGAGTCCAGGAGCCACATGGAGAACGTAAATAATAT 3302
Query 1471 -------------------------------------------------------------------------- 1470
Sbjct 3303 AAGAGTACTTCTTTTTTCTGATTCCTCTCCCTCCTACTGCTGGGGATCATACATGGGGCTTTGTACAGGCCAAA 3376
Query 1471 -------------------------------------------------------------------------- 1470
Sbjct 3377 CAAGGACTGAGTTGCATCTTCAGCCTGAAAAGAAGCATTTTTCATGAGTTGAAATGTAGGTACCGTGTAGGTAC 3450
Query 1471 -------------------------------------------------------------------------- 1470
Sbjct 3451 GTAGTCTGGGACTGAGACAGAGGGAACGTTGCTGCAACCATGGACAGAGGTTTCCTTCAACTGGAGAGTGAATG 3524
Query 1471 -------------------------------------------------------------------------- 1470
Sbjct 3525 GCCCTTGTCTGGCACAGGAGTTCTGGCATTCTAAGACATAGTGAGCATCCTTACTGTGGCCTCCAAGCCAAGAA 3598
Query 1471 -------------------------------------------------------------------------- 1470
Sbjct 3599 GGGAAGAGAACCAAAGAGAACAGCTGGGCAGACTGTTTTGGTTGTGTTATGTCTCAGTTGGCTTCAGCCACTGT 3672
Query 1471 -------------------------------------------------------------------------- 1470
Sbjct 3673 CAGAGGGTTCCTGGCATAGTGAGTACTTGACTTTCATACTCAGCTAGTAAACACACAGAGGTGTGATCATGGAG 3746
Query 1471 -------------------------------------------------------------------------- 1470
Sbjct 3747 GAAGGAAGGAACTGTCTGGGAGACCAGGGAGCACAGGGCTGTGCTTATACCCTATATTTATATGTCAGCTGCAA 3820
Query 1471 -------------------------------------------------------------------------- 1470
Sbjct 3821 ATGCTTTATCACAGGTAGGCCACTGGTGTGGACTTGTGCCTTGCCAAGCCCTTGCACTCTTGATTTGGGTGGAT 3894
Query 1471 -------------------------------------------------------------------------- 1470
Sbjct 3895 ACTGCTACTTGAGCATACTGCTACTTGGCAGTTCTGAGAGCAGGCTTTGGGTCCCTAGGAGACCTCTGACAAGA 3968
Query 1471 -------------------------------------------------------------------------- 1470
Sbjct 3969 GTGTGATAGAGCTACAGCAGTATGCCAAGAAGAACAGGCCCAACCTTCACATCCTGAGCAAGCTACAAGAAGAG 4042
Query 1471 -------------------------------------------------------------------------- 1470
Sbjct 4043 ATGAAGAGGCTGGCTGCAGAGCGGGAGGAGACTCGGAAGAAACCCAAGATGTCAATTGTAGCATCTGCCCAGCC 4116
Query 1471 -------------------------------------------------------------------------- 1470
Sbjct 4117 TGGTGGTGAGCCCTTGTGCACAGTCGATGTATGAGGTAGGCAGCATGGGCCAACAGTGCTACCCAGGAGAGACC 4190
Query 1471 -------------------------------------------------------------------------- 1470
Sbjct 4191 ATCAGCCACACATCATCACTCTGCAGCTCCAGGCCTCCAACCTAAGTTCCTTCCCTGTGGCAGGGTCTGGGCTC 4264
Query 1471 -------------------------------------------------------------------------- 1470
Sbjct 4265 TGGCTCTGGCACATGGGGACAGCTGTGACTACACAGTACACATGCAAAGAAGCAGTTCTGGACAAGCTGCTCTC 4338
Query 1471 -------------------------------------------------------------------------- 1470
Sbjct 4339 AATGTGACTGGATATACTTAAGGATCAGTCATAAGTTAACTGCACAAGTGGAAGCTGATAGACAGCTGTAGATC 4412
Query 1471 -------------------------------------------------------------------------- 1470
Sbjct 4413 CTGCTTGTATGTATCTGCTGCGGACCGTTTTTATGAAGGTTTTCATTAATTTTAGTACACTATATGCACTGACA 4486
Query 1471 -------------------------------------------------------------------------- 1470
Sbjct 4487 AGAAGTAATACTTCGTTGATAGATGAGATGACCAGGTTTTATAGCTTTGGCTGGCCTATGATGCCAGGTAGCCC 4560
Query 1471 -------------------------------------------------------------------------- 1470
Sbjct 4561 CTTTGCTATGGTTCTTTCTGGTGGAGCCACTGAGACTTGGTCAGAAGATGCAGGTATCCTGTCCTGTAGAATTA 4634
Query 1471 -------------------------------------------------------------------------- 1470
Sbjct 4635 CCTGCTTTGTGTGTTTTGCATTTTCTTCTGAAAAAGTTATAACAGAAAGGAATATTTCAGGCTATTTTGGCTTA 4708
Query 1471 -------------------------------------------------------------------------- 1470
Sbjct 4709 AAATAAAACAAAATTTTAGCACCAGAAATACTCTTCCGAGATTGCAGTGAAGATACTGAGTGTTAGTCCGATTG 4782
Query 1471 -------------------------------------------------------------------------- 1470
Sbjct 4783 ATCCTTTTTCTTATGAAGTCTTAATGTCCTAACAGCCGTCTTCTGGATACTGAAGCTTCCACCTTCGATAAACT 4856
Query 1471 -------------------------------------------------------------------------- 1470
Sbjct 4857 TAGCAACAATTTTTTACAGAGATTTTTGCACAACCAAGCCCATCTGTTCATCAATTTTTAAAGCTTTTATGATG 4930
Query 1471 -------------------------------------------------------------------------- 1470
Sbjct 4931 TTTTAAAATTTGGAAAGAAACTTTTACAGTAAGAATGAAAGATGCATTTCAACAGATGAATATGCATAAATAGG 5004
Query 1471 -------------------------------------------------------------------------- 1470
Sbjct 5005 GAACTGGCCTTCAATGTAGCCCATCACTGACCAAGAGCTGCCTGGCACATTGTACACGATAAGTAGTTATGGTG 5078
Query 1471 -------------------------------------------------------------------------- 1470
Sbjct 5079 TTTTTTGATCTCAAGGATAGCTGCTCTGTGCAGCCAGGCCTGATTGCAGGTTTTTGTCTACCTATGCTCATTGG 5152
Query 1471 -------------------------------------------------------------------------- 1470
Sbjct 5153 ATAGCCCCTGTAAATGGGTATTGAGTAGAGGGGTATTCAGAGCCCTATTACCTGTTCAGAGGGGCTACACTCTA 5226
Query 1471 -------------------------------------------------------------------------- 1470
Sbjct 5227 CATCCTCAGTGTCTCTAACCATGTACCTGAAGATACATGGGTGACATGTGCTGTTAGAAAGATAAGATGGCAAC 5300
Query 1471 -------------------------------------------------------------------------- 1470
Sbjct 5301 TGTGGGCCTCCCAACAGCATCTTCCTCCTCCTTAATCATGTGTGTGACAGCAGTTAATGTTTATGTTAATCTTG 5374
Query 1471 -------------------------------------------------------------------------- 1470
Sbjct 5375 GCAAAAAGAACCCTTAATTCAAGTTGGTAGACTTGGACACTTGATTCTTTTCTGCCTCCCATTCAGTTGTGTTC 5448
Query 1471 -------------------------------------------------------------------------- 1470
Sbjct 5449 AGTCTTTTGACTAACCATTGCCCTTAAAACATACTTAACATTGAAAAAGCATATGGTAATGGTGGTATCTCTGC 5522
Query 1471 -------------------------------------------------------------------------- 1470
Sbjct 5523 AGCCTCACCGACCCAGGCACTGTCAACAGGTGCTGCCACACATTCCTGGTCTCCAGTGCCCTCCCTGTCTCTTA 5596
Query 1471 -------------------------------------------------------------------------- 1470
Sbjct 5597 CAGGTGGGTCTTATATGTACAGTCATGCTGCAAGGGTGGGGAGCCTGTGCTGATGTGCTTCTGTGTGTTGGCCA 5670
Query 1471 ------------------------------------------------------ 1470
Sbjct 5671 AGGCTGTAGGGTGTACCCTGATGGTCTGAACACATAAAACTGTCCAAAAGGGAA 5724
