Nucleotide Global Alignment

Description

• Query: TRCN0000474481
• Subject: XM_024446658.1
• Aligned Length: 3484
• Identities: 2065
• Gaps: 1310

Alignment

Query    1  ATGGCGACCTCCGAGAGGGCTCTCCTGAGGACCAGAGCTGCCTCTCTCCTGAGAGGCTTGGGCAGATCCCGAAC  74
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct    1  ATGGCGACCTCCGAGAGGGCTCTCCTGAGGACCAGAGCTGCCTCTCTCCTGAGAGGCTTGGGCAGATCCCGAAC  74

Query   75  TGGAGCCCGATCGTTACAGTTTCGCGCAGAAAAAGAGCGTCAGCCTTGCTGGTCTTTTCCCATGGGGCAGAAGA  148
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct   75  TGGAGCCCGATCGTTACAGTTTCGCGCAGAAAAAGAGCGTCAGCCTTGCTGGTCTTTTCCCATGGGGCAGAAGA  148

Query  149  CGAAAGGCAGCTCTAACATAGCCTCCTCCTACCTGCTCCAGCAGCTCATGCACCGCTATCAGGAGCTGGACTCG  222
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  149  CGAAAGGCAGCTCTAACATAGCCTCCTCCTACCTGCTCCAGCAGCTCATGCACCGCTATCAGGAGCTGGACTCG  222

Query  223  GACGGAGATGAGGACCAGGGCGAGGGCGAGGCGGGATCCGAGGAGTCCTCAGAGTCCGAAATGCTGAATTTGGA  296
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  GACGGAGATGAGGACCAGGGCGAGGGCGAGGCGGGATCCGAGGAGTCCTCAGAGTCCGAAATGCTGAATTTGGA  296

Query  297  GGAGGAATTTGATGGGGTCCTGAGAGAGGAGGCTGTGGCCAAAGCACTCCATCACTTGGGGCGCTCAGGCTCTG  370
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  GGAGGAATTTGATGGGGTCCTGAGAGAGGAGGCTGTGGCCAAAGCACTCCATCACTTGGGGCGCTCAGGCTCTG  370

Query  371  GGACTGAGCAAGTCTACCTCAATCTAACTTTATCAGGTTGTAATTTAATTGATGTTAGCATTCTCTGTGGATAT  444
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  GGACTGAGCAAGTCTACCTCAATCTAACTTTATCAGGTTGTAATTTAATTGATGTTAGCATTCTCTGTGGATAT  444

Query  445  GTTCATCTACAGAAGTTGGATCTTTCAGCGAATAAAATTGAAGATTTATCTTGTGTGAGTTGTATGCCTTATCT  518
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  GTTCATCTACAGAAGTTGGATCTTTCAGCGAATAAAATTGAAGATTTATCTTGTGTGAGTTGTATGCCTTATCT  518

Query  519  CCTAGAACTTAATGCTTCTCAAAATAATTTGACTACGTTCTTCAATTTCAAGCCACCCAAAAACCTCAAGAAAG  592
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
Sbjct  519  CCTAGAACTTAATGCTTCTCAAAATAATTTGACTACGTTCTTCAATTTCAAGCCACCCAAAAACCTCAA-----  587

Query  593  CGGATTTTTCCCACAACCAAATTTCTGAAATTTGTGATTTGTCAGCGTATCATGCTCTCACTAAACTAATTTTG  666
                                                                                      
Sbjct  588  --------------------------------------------------------------------------  587

Query  667  GATGGCAATGAGATAGAAGAATCAGTGGACTAGAGATGTGCACACCTAATTCACCTTAGTTTGGCCACAATAGA  740
                                                                                      
Sbjct  588  --------------------------------------------------------------------------  587

Query  741  TCACGACATTAATGGCTTAAACAAGTTACCAATCAAAATACTTTGTTCTGAGCAATAACCAGATTGAGATGATC  814
                                                             |||||||||||||||||||||||||
Sbjct  588  -------------------------------------------------GAGCAATAACCAGATTGAGATGATC  612

Query  815  ACAGGTTTGGAGGATCTGAAAGCCCTGCAGAACCTGGATCTGTCCCACAATCAGATAAGCAGCCTCCAAGGCTT  888
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  613  ACAGGTTTGGAGGATCTGAAAGCCCTGCAGAACCTGGATCTGTCCCACAATCAGATAAGCAGCCTCCAAGGCTT  686

Query  889  AGAGAATCATGACCTCCTGGAAGTGATCAACCTGGAGGATAATAAGATTGCTGAGCTGAGAGAAATAGAATACA  962
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  687  AGAGAATCATGACCTCCTGGAAGTGATCAACCTGGAGGATAATAAGATTGCTGAGCTGAGAGAAATAGAATACA  760

Query  963  TTAAAAATTTACCCATCCTTCGAGTTCTCAATCTTCTAGAAAATCCAATTCAGGAAAAGTCTGAATATTGGTTC  1036
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  761  TTAAAAATTTACCCATCCTTCGAGTTCTCAATCTTCTAGAAAATCCAATTCAGGAAAAGTCTGAATATTGGTTC  834

Query 1037  TTCGTAATTTTTATGCTTCTGCGATTAACAGAATTAGATCAGAAGAAGATTAAAGTGGAAGAAAAGGTTTCAGC  1110
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  835  TTCGTAATTTTTATGCTTCTGCGATTAACAGAATTAGATCAGAAGAAGATTAAAGTGGAAGAAAAGGTTTCAGC  908

Query 1111  AGTGAATAAATATGATCCTCCCCCTGAAGTGGTTGCAGCTCAAGACCACCTGACCCATGTTGTCAACAGCGTGA  1184
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  909  AGTGAATAAATATGATCCTCCCCCTGAAGTGGTTGCAGCTCAAGACCACCTGACCCATGTTGTCAACAGCGTGA  982

Query 1185  TGCAGCCGCAGAGGATCTTTGACAGCACTCTTCCCAGCCTGGATGCTCCTTATCCCATGCTGATACTAGCTGGT  1258
            ||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||||||||||||
Sbjct  983  TGCAGCCGCAGAGGATCTTTGACAGCACTCTTCCCAGCCTGGATGCCCCTTATCCCATGCTGATACTAGCTGGT  1056

Query 1259  CCTGAAGCTTGTGGGAAACGAGAGCTTGCCCATCGCCTCTGCAGACAGTTTAGCACTTACTTCAGATATGGGGC  1332
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1057  CCTGAAGCTTGTGGGAAACGAGAGCTTGCCCATCGCCTCTGCAGACAGTTTAGCACTTACTTCAGATATGGGGC  1130

Query 1333  CTGTCATACCACAAGACCACCTTACTTTGGAGAAGGGGATCGAGTTGATTATCATTTTATCTCTCAAGACGTTT  1406
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1131  CTGTCATACCACAAGACCACCTTACTTTGGAGAAGGGGATCGAGTTGATTATCATTTTATCTCTCAAGACGTTT  1204

Query 1407  TTGATGAAATGGTGAACATGGGGAAATTCATTCTAACATTTAGTTATGGTAATCACAAGTATGGATTAAATAGG  1480
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1205  TTGATGAAATGGTGAACATGGGGAAATTCATTCTAACATTTAGTTATGGTAATCACAAGTATGGATTAAATAGG  1278

Query 1481  GACACCGTAGAAGGTATCGCAAGAGATGGTTTGGCAAGCTGTATTCATATGGAAATAGAAGGTGTAAGAAGTTT  1554
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1279  GACACCGTAGAAGGTATCGCAAGAGATGGTTTGGCAAGCTGTATTCATATGGAAATAGAAGGTGTAAGAAGTTT  1352

Query 1555  GAAATATTCCTATTTTGAGCCTCGTTATATCCTGGTGGTGCCCATGAACAAGGAAAAATATGAGGGATATTTGC  1628
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1353  GAAATATTCCTATTTTGAGCCTCGTTATATCCTGGTGGTGCCCATGAACAAGGAAAAATATGAGGGATATTTGC  1426

Query 1629  GGAGAAAAGGATTATTCAGTCGTGCAGAAATTGAATTTGCTGTCTCCAGAGTGGACCTTTATAATAAAAATTAA  1702
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||.||||||||
Sbjct 1427  GGAGAAAAGGATTATTCAGTCGTGCAGAAATTGAATTTGCTGTCTCCAGAGTGGACCTTTAT-ATTAAAATTAA  1499

Query 1703  TCAGAATTTTCCGGGGATATTTGAATGAGGTAATCAATGCAGATGATCTGGATG-TGCCTTACAAAAAACTGAG  1775
            |||||||||||| |||||||||..|||||||||||||||||||||||||||||| |||| |||.||||||||||
Sbjct 1500  TCAGAATTTTCC-GGGATATTTTGATGAGGTAATCAATGCAGATGATCTGGATGTTGCC-TACCAAAAACTGAG  1571

Query 1776  TCAGCTCATTAGAGAATACCTTGGATGGAATGAGGAACCTGCCAAGAGTTTGGCTACAACTGCAGATGTA----  1845
            ||||||||||||||||||||||||||.||.|||||||||||||||||||||||||||||||||||..|.|    
Sbjct 1572  TCAGCTCATTAGAGAATACCTTGGATTGACTGAGGAACCTGCCAAGAGTTTGGCTACAACTGCAGCAGGAGCTC  1645

Query 1846  --------AAGA------------------CATCCCACCT------------------------GAAACCTG-A  1868
                    ||||                  ||.|.|||||                        |||| ||| |
Sbjct 1646  CCGCTAGCAAGAAGACTGTCTCTGGGGTGCCAGCACACCTGGTTCCATCTCCCAGGTGCTTGGCGAAA-CTGCA  1718

Query 1869  AGC------------------GCATC---CTACAAAGTATATT----------TCTTCGAATAT----GGGTGA  1907
            |||                  |||||   ||..||.|.|.|||          .|.|.|||.||    |.|| |
Sbjct 1719  AGCAGATGGCCAGATGACAGAGCATCTCTCTGGAATGCAAATTCATGCCAAGGACCTAGAAAATCAGAGCGT-A  1791

Query 1908  TTTCCT-----------------------------------------------GCATTCTACAGACAG------  1928
            ..||||                                               ||.||||.|.|||||      
Sbjct 1792  ACTCCTGCCCAGAACCAAGAGCTGGCTCAGGATGGAGAAACCCATCAAAAAGAGCTTTCTCCTGACAGCCATCT  1865

Query 1929  ----------------AAACTACCTCATTAAAT----TTTGGGCCAAACTT--TCAG-----CCAAAA------  1969
                            .||| ||||||.|..||    ..||||    .|||  ||||     |||..|      
Sbjct 1866  CAATCCTGAGCTCCCTCAAC-ACCTCAGTTCATCAGCACTGGG----TCTTCCTCAGCAGGCCCAGGACCTATC  1934

Query 1970  ---AAACACCAGCGGAA-----------------AGAGATT---CTATACACAGACAG-CAC-GAGGCAG----  2014
               |||| |||.|||||                 |||..||   ||| |.|||.|.|| ||| |||.|||    
Sbjct 1935  CCTAAAC-CCAACGGAAGAGGATGTCCAACAATCAGATCTTCCCCTA-AAACAAATAGCCACTGAGACAGATGT  2006

Query 2015  CCCGGCAAGCTCTAA-----------TGGGAAGGATACGCCCTGATCACAC-----------ACTCCTAT----  2062
            |||.|  ||.|..||           ||||.||   .|.|||  |||||.|           .|||||.|    
Sbjct 2007  CCCTG--AGGTGGAAGCCAGTGAGGTTGGGCAG---TCTCCC--ATCACCCCGACCCTGGTGCCTCCTGTGCAC  2073

Query 2063  --TTC------------------------------------AAAGGGGTC----CAGTACCAG-----------  2083
              |||                                    .||||.|||    .||..||||           
Sbjct 2074  CCTTCCCCTCCCTCGTCCCGCAGCCCTCAGCCAGGCCAGGACAAGGAGTCAGGGGAGGCCCAGGTAACCCCTAC  2147

Query 2084  -----CACCTCTCACCAGTGGTCTACACTATTATACA-------------ACT-----------TTAGAAGAAC  2128
                 |.|||||        ||||..||  .|.||||             |||           |.|| ||||.
Sbjct 2148  TGGCCCTCCTCT--------GTCTGAAC--CTCTACAGGGACCTGGCCCCACTCCCCTCAGCCCTCAG-AGAAT  2210

Query 2129  TCTGGA-----AAAGTTTTGA-TCTTTGTGAAGACTATTTTAAACCTCCA--------TTTGGACCAT-ATCCT  2187
            ||.|||     |||   |||| ||       ||||      ||||.||||        ||...||||| |||||
Sbjct 2211  TCAGGATGAGGAAA---TTGAGTC-------AGAC------AAACTTCCACCCAGCAGTTCCCACCATGATCCT  2268

Query 2188  -GAAAAGAGTGGGAAGGATTC------------CTTGGTTTCCATGAAA--TGTT--CATTGTTTC------GG  2238
             .||||          |||||            |||||  |.|| ||||  ||.|  |   |.|||      .|
Sbjct 2269  CCAAAA----------GATTCTTCCCACACTGACTTGG--TGCA-GAAACTTGCTGGC---GATTCTCAGCAAG  2326

Query 2239  TTCTG----------------------------TCCGTGGTCA-----------AAAGAATTGC----------  2263
            .||||                            |||| .||||           ..||||.|||          
Sbjct 2327  CTCTGAAGGAGGAAACCTCCAAACCGGAAGCCATCCG-AGTCAGTATCCCTCACCCAGAACTGCCACATCCCCA  2399

Query 2264  ---CTT--------------TCCAGCCTCCGG--AGGGGAG---------CATTTCTTCACACCTAGGA-----  2304
               |||              ..|||||.|.||  |||||||         |.||.|||    |||||.|     
Sbjct 2400  AGACTTAGCAACAGATACCAAGCAGCCCCAGGCCAGGGGAGCCCCGGGGACCTTGCTT----CCTAGAAGCCGG  2469

Query 2305  --------------------------TCAGGAG-----------CCAGTGACAGTGAGACCGAAGAGACCCGGA  2341
                                      |||||.|           ||||.| ||| |||.||   .|.||||  |
Sbjct 2470  CTGGCTCCCACTCGGCTGCCCCAGCCTCAGGTGCTGGCTCCCCTCCAGAG-CAG-GAGGCC---CACACCC--A  2536

Query 2342  AAGCACTACCTAT--------------------------ACAATCATTTTCACATGAAA--AAGA--GTCT---  2382
            |   ||| |||||                          ||||.|    ||.|||.|||  |.||  ||||   
Sbjct 2537  A---ACT-CCTATCGCCCAGCAGGGAAGAGGCTTTAGGAACAACC----TCCCATCAAACCATGACGGTCTCTC  2602

Query 2383  ---------CACCAAC-------ACAGACA-----ACACTCGGTCCCAGTCATCAGTCGCCCAGGTTCC-AACG  2434
                     |||||||       .||||||     |.|||...||||| |||      ||||    ||| .|| 
Sbjct 2603  CCAGGCTTCCACCAACCCGGGAAGCAGACACCAGTAAACTTCCTCCCA-TCA------GCCC----TCCGCAC-  2664

Query 2435  TCAAACCCACCCTCCC---TCCAATCCCTCAGG--GCC-----------GCAGG--------------------  2472
            |||||.|||||  .||   ||..|.|||.||||  |||           |||.|                    
Sbjct 2665  TCAAAACCACC--ACCAAATCTGAGCCCCCAGGCAGCCCACAGTCTTCAGCAAGTCCAGGAAGAGAAGGTCAGT  2736

Query 2473  --------------------------------------------------------------------------  2472
                                                                                      
Sbjct 2737  GAGGTGAAACTCCCTCTTATCAGTCCCCCCAGCCAGGAGCAAGCAGAACCTCGCATCCTCAGTCCCGCCCAGGA  2810

Query 2473  --------------------------------------------------------------------------  2472
                                                                                      
Sbjct 2811  GGAGGCGGCTCAGAAAGTGAGGCTCCCTCGCATTCCTGCTCCTCTTCCGGAGCCAGGGCTGCCCCAGAACTCGG  2884

Query 2473  --------------------------------------------------------------------------  2472
                                                                                      
Sbjct 2885  GGACTCAGCCTGATCCAAGGCCTGCAAAGGAAAGGAAAGCTCCCCAAGCAGGCAGCTCCTCCAGGAGGAAGATT  2958

Query 2473  --------------------------------------------------------------------------  2472
                                                                                      
Sbjct 2959  CCAGACATGCGGGCCTCACCCCACAACCAGGGGCCACTTCAGCAGACAGGGGCTAGGGAAAAAAAGCTCCCCAA  3032

Query 2473  --------------------------------------------------------------------------  2472
                                                                                      
Sbjct 3033  CCAGAAAGGGACGGCTAGAGGACTGGCACCTCTGGAAGAGGCACCACCTGGGAACCACCAGCCAGCCTTGCAGC  3106

Query 2473  --------------------------------------------------------------------------  2472
                                                                                      
Sbjct 3107  TAGAACCCCACGATCAGCCAGCTCCCACCATGGTGCCCGACGATCCCAACCCCAGCCCTCCTCTTGTTTCTTGT  3180

Query 2473  ------  2472
                  
Sbjct 3181  CTAAGC  3186