Nucleotide Global Alignment

Description

Query:
TRCN0000474713
Subject:
NM_001349650.1
Aligned Length:
3203
Identities:
2631
Gaps:
565

Alignment

Query    1  ATGACCTCTTACCGGGAGCGGAGTGCCGACCTGGCCCGTTTCTACACTGTCACCGAGCCCCAGCGACACCCGAG  74
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query   75  GGGCTACACAGTATATAAGGTCACCGCCCGGGTTGTTTCACGAAGAAATCCAGAGGATGTCCAGGAGATAATTG  148
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  149  TATGGAAGAGATACAGTGATTTTAAGAAACTACACAAAGAACTATGGCAAATTCACAAAAACTTATTCCGACAT  222
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  223  TCAGAGTTGTTTCCTCCATTTGCTAAAGGAATAGTGTTTGGGCGATTTGATGAAACTGTTATCGAAGAGAGAAG  296
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  297  ACAATGTGCTGAAGACCTGCTACAGTTCTCTGCCAATATTCCTGCTCTTTACAATAGTAAACAGCTTGAAGACT  370
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  371  TTTTCAAGGGTGGAATAATTAATGATAGTTCTGAATTAATTGGTCCTGCTGAAGCTCACTCAGATTCCCTCATT  444
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  445  GATACCTTTCCTGAGTGTAGTACGGAAGGCTTCTCCAGTGACAGTGATCTGGTATCTCTTACTGTTGATGTGGA  518
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  519  TTCTCTTGCTGAGTTAGATGATGGAATGGCTTCCAATCAAAATTCTCCCATTAGAACTTTTGGTCTCAATCTTT  592
                                     |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct    1  -------------------------ATGGCTTCCAATCAAAATTCTCCCATTAGAACTTTTGGTCTCAATCTTT  49

Query  593  CTTCGGATTCTTCAGCACTAGGGGCTGTTGCTTCTGACAGTGAACAGAGCAAAACAGAAG-AGAACGGGAAAGT  665
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct   50  CTTCGGATTCTTCAGCACTAGGGGCTGTTGCTTCTGACAGTGAACAGAGCAAAACAGAAGAAGAACGGGAAAGT  123

Query  666  CGTAGCCTCTTTCCTGGCAGTTTAAAGCCGAAGCTTG--CAGAGAGATTATTTGGAGAAAGCA-GAGAATTAAT  736
            |||||||||||||||||||||||||||||||||||||  .||||||||||||||||||||||| ||||||||||
Sbjct  124  CGTAGCCTCTTTCCTGGCAGTTTAAAGCCGAAGCTTGGCAAGAGAGATTATTTGGAGAAAGCAGGAGAATTAAT  197

Query  737  -AAGCTGGCTTTAAAAA------GAGAGAGACGACTATG-AGCTGCTTCTGATTTTTATAGGAA-GGAGTTGAT  801
             ||||||||||||||||      .||| ||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct  198  AAAGCTGGCTTTAAAAAAGGAAGAAGA-AGACGACTATGAAGCTGCTTCTGATTTTTATAGGAAGGGAGTTGAT  270

Query  802  TTACTCCTAGAAGGTGTTCAAGGAGAGTCAAGCCCTACCCGTCGAGAAGCTGTGAAGAGAAGAACAGCCGAGTA  875
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  271  TTACTCCTAGAAGGTGTTCAAGGAGAGTCAAGCCCTACCCGTCGAGAAGCTGTGAAGAGAAGAACAGCCGAGTA  344

Query  876  CCTCATGCGGGCAGAAAGTATCTCTAGTCTTTATGGGAAACCTCAGCTTGATGATGTATCTCAGCCTCCAGGAT  949
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  345  CCTCATGCGGGCAGAAAGTATCTCTAGTCTTTATGGGAAACCTCAGCTTGATGATGTATCTCAGCCTCCAGGAT  418

Query  950  CACTAAGTTCAAGGCCCCTTTGGAACCTAAGGAGCCCTGCCGAGGAGCTGAAGGCCTTCAGAGTCCTTGGGGTG  1023
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  419  CACTAAGTTCAAGGCCCCTTTGGAACCTAAGGAGCCCTGCCGAGGAGCTGAAGGCCTTCAGAGTCCTTGGGGTG  492

Query 1024  ATTGACAAGGTTTTACTTGTAATGGACACAAGGACAGAACAGACTTTCATTTTAAAAGGTCTAAGGAAAAGCAG  1097
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  493  ATTGACAAGGTTTTACTTGTAATGGACACAAGGACAGAACAGACTTTCATTTTAAAAGGTCTAAGGAAAAGCAG  566

Query 1098  TGAATACAGCAGGAACAGAAAGACCATCATCCCCCGCTGTGTGCCCAACATGGTGTGTCTGCATAAGTACATCA  1171
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  567  TGAATACAGCAGGAACAGAAAGACCATCATCCCCCGCTGTGTGCCCAACATGGTGTGTCTGCATAAGTACATCA  640

Query 1172  TCTCTGAGGAGTCAGTATTTCTTGTGCTGCAGCATGCGGAAGGTGGCAAACTGTGGTCATATATCAGTAAATTT  1245
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  641  TCTCTGAGGAGTCAGTATTTCTTGTGCTGCAGCATGCGGAAGGTGGCAAACTGTGGTCATATATCAGTAAATTT  714

Query 1246  CTAAACAGAAGTCCTGAAGAAAGCTTTGACATCAAGGAAGTGAAAAAACCTACACTTGCAAAAGTTCACCTGCA  1319
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  715  CTAAACAGAAGTCCTGAAGAAAGCTTTGACATCAAGGAAGTGAAAAAACCTACACTTGCAAAAGTTCACCTGCA  788

Query 1320  GCAGCCAACTTCTAGTCCTCAGGACAGCAGTAGCTTTGAATCCAGAGGAAGTGATGGTGGAAGCATGCTTAAAG  1393
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  789  GCAGCCAACTTCTAGTCCTCAGGACAGCAGTAGCTTTGAATCCAGAGGAAGTGATGGTGGAAGCATGCTTAAAG  862

Query 1394  CTCTGCCTTTGAAGAGTAGTCTTACTCCAAGTTCTCAAGATGACAGCAACCAGGAAGATGATGGCCAAGATAGC  1467
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  863  CTCTGCCTTTGAAGAGTAGTCTTACTCCAAGTTCTCAAGATGACAGCAACCAGGAAGATGATGGCCAAGATAGC  936

Query 1468  TCTCCAAAGTGGCCAGATTCTGGTTCAAGTTCAGAAGAAGAATGTACTACTAGTTATTTAACATTATGCAATGA  1541
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  937  TCTCCAAAGTGGCCAGATTCTGGTTCAAGTTCAGAAGAAGAATGTACTACTAGTTATTTAACATTATGCAATGA  1010

Query 1542  ATATGGGCAAGAAAAGATTGAACCAGGGTCTTTGAATGAGGAGCCCTTCATGAAGACTGAAGGGAATGGTGTTG  1615
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1011  ATATGGGCAAGAAAAGATTGAACCAGGGTCTTTGAATGAGGAGCCCTTCATGAAGACTGAAGGGAATGGTGTTG  1084

Query 1616  ATACAAAAGCTATTAAAAGCTTCCCAGCACACCTTGCTGCTGACAGTGACAGCCCCAGCACACAGCTGAGAGCT  1689
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1085  ATACAAAAGCTATTAAAAGCTTCCCAGCACACCTTGCTGCTGACAGTGACAGCCCCAGCACACAGCTGAGAGCT  1158

Query 1690  CACGAGCTGAAGTTCTTCCCCAACGATGACCCAGAAGCAGTTAGTTCTCCAAGAACATCAGATTCCCTCAGTAG  1763
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1159  CACGAGCTGAAGTTCTTCCCCAACGATGACCCAGAAGCAGTTAGTTCTCCAAGAACATCAGATTCCCTCAGTAG  1232

Query 1764  ATCAAAAAATAGCCCCATGGAATTCTTTAGGATAGACAGTAAGGATAGCGCAAGTGAACTCCTGGGACTTGACT  1837
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1233  ATCAAAAAATAGCCCCATGGAATTCTTTAGGATAGACAGTAAGGATAGCGCAAGTGAACTCCTGGGACTTGACT  1306

Query 1838  TTGGAGAAAAATTGTATAGTCTAAAATCAGAACCTTTGAAACCATTCTTTACTCTTCCAGATGGAGACAGTGCT  1911
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1307  TTGGAGAAAAATTGTATAGTCTAAAATCAGAACCTTTGAAACCATTCTTTACTCTTCCAGATGGAGACAGTGCT  1380

Query 1912  TCTAGGAGTTTTAATACTAGTGAAAGCAAGGTAGAGTTTAAAGCTCAGGACACCATTAGCAGGGGCTCAGATGA  1985
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1381  TCTAGGAGTTTTAATACTAGTGAAAGCAAGGTAGAGTTTAAAGCTCAGGACACCATTAGCAGGGGCTCAGATGA  1454

Query 1986  CTCAGTGCCAGTTATTTCATTTAAAGATGCTGCTTTTGATGATGTCAGTGGTACTGATGAAGGAAGACCTGATC  2059
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1455  CTCAGTGCCAGTTATTTCATTTAAAGATGCTGCTTTTGATGATGTCAGTGGTACTGATGAAGGAAGACCTGATC  1528

Query 2060  TTCTTGTAAATTTACCTGGTGAATTGGAGTCAACAAGAGAAGCTGCAGCAATGGGACCTACTAAGTTTACACAA  2133
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1529  TTCTTGTAAATTTACCTGGTGAATTGGAGTCAACAAGAGAAGCTGCAGCAATGGGACCTACTAAGTTTACACAA  1602

Query 2134  ACTAATATAGGGATAATAGAAAATAAACTCTTGGAAGCCCCTGATGTTTTATGCCTCAGGCTTAGTACTGAACA  2207
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1603  ACTAATATAGGGATAATAGAAAATAAACTCTTGGAAGCCCCTGATGTTTTATGCCTCAGGCTTAGTACTGAACA  1676

Query 2208  ATGCCAAGCACATGAGGAGAAAGGCATAGAGGAACTGAGTGATCCCTCTGGGCCCAAATCCTATAGTATAACAG  2281
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1677  ATGCCAAGCACATGAGGAGAAAGGCATAGAGGAACTGAGTGATCCCTCTGGGCCCAAATCCTATAGTATAACAG  1750

Query 2282  AGAAACACTATGCACAGGAGGATCCCAGGATGTTATTTGTAGCAGCTGTTGATCATAGTAGTTCAGGAGATATG  2355
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1751  AGAAACACTATGCACAGGAGGATCCCAGGATGTTATTTGTAGCAGCTGTTGATCATAGTAGTTCAGGAGATATG  1824

Query 2356  TCTTTGTTACCCAGCTCAAGATCTTAGTTTTCAAGGACTNGGAGTGGTTGAGTCAGCAGTAACTGCAAACAACA  2429
            ||||||||||||||||| |||||.||..|||||||||||.||||||||||||||||||||||||||||||||||
Sbjct 1825  TCTTTGTTACCCAGCTC-AGATCCTAAGTTTCAAGGACTTGGAGTGGTTGAGTCAGCAGTAACTGCAAACAACA  1897

Query 2430  CAGAAGAAAAGC-TATTCCGTA-TTGTAGTCCACTCTCAGGTGCTAATGAATATA-TGCAAAGCACAGACACTT  2500
            |||||| ||||| ||||||||| |||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 1898  CAGAAG-AAAGCTTATTCCGTATTTGTAGTCCACTCTCAGGTGCTAATGAATATATTGC-AAGCACAGACACTT  1969

Query 2501  TAAAAACAGAAGAAGTA-TGCTGTTNNACAGATCAGACTGATGATTTGGCTAAAGAGGAACCAACTTCTTTATT  2573
            ||||||||||||||||| ||||||| .|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1970  TAAAAACAGAAGAAGTATTGCTGTT-TACAGATCAGACTGATGATTTGGCTAAAGAGGAACCAACTTCTTTATT  2042

Query 2574  CCAGAGAGACTCTGAGACTAAGGGTGAAAGTGGTTTAGTGCTAGAAGGAGACAAGGAAATACATCAGATTTTTG  2647
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2043  CCAGAGAGACTCTGAGACTAAGGGTGAAAGTGGTTTAGTGCTAGAAGGAGACAAGGAAATACATCAGATTTTTG  2116

Query 2648  AGGACCTTGATAAAAAATTAGCACTAGCCTCCAGGTTTTACATCCCAGAGGGCTGCATTCAAAGATGGGCAGCT  2721
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2117  AGGACCTTGATAAAAAATTAGCACTAGCCTCCAGGTTTTACATCCCAGAGGGCTGCATTCAAAGATGGGCAGCT  2190

Query 2722  GAAATGGTGGTAGCCCTTGATGCTTTACATAGAGAGGGAATTGTGTGCCGCGATTTGAACCCAAACAACATCTT  2795
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2191  GAAATGGTGGTAGCCCTTGATGCTTTACATAGAGAGGGAATTGTGTGCCGCGATTTGAACCCAAACAACATCTT  2264

Query 2796  ATTGAATGATAGAGGACACATTCAGCTAACGTATTTTAGCAGGTGGAGTGAGGTTGAAGATTCCTGTGACAGCG  2869
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2265  ATTGAATGATAGAGGACACATTCAGCTAACGTATTTTAGCAGGTGGAGTGAGGTTGAAGATTCCTGTGACAGCG  2338

Query 2870  ATGCCATAGAGAGAATGTACTGTGCCCCAGAGGTTGGAGCAATCACTGAAGAAACTGAAGCCTGTGATTGGTGG  2943
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2339  ATGCCATAGAGAGAATGTACTGTGCCCCAGAGGTTGGAGCAATCACTGAAGAAACTGAAGCCTGTGATTGGTGG  2412

Query 2944  AGTTTGGGTGCTGTCCTCTTTGAACTTCTCACTGGCAAGACTCTGGTTGAATGCCATCCAGCAGGAATAAATAC  3017
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2413  AGTTTGGGTGCTGTCCTCTTTGAACTTCTCACTGGCAAGACTCTGGTTGAATGCCATCCAGCAGGAATAAATAC  2486

Query 3018  TCACACTACTTTGAACATGCCAGAATGTGTCTCTGAAGAGGCTCGCTCACTCATTCAACAGCTCTTGCAGTTCA  3091
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2487  TCACACTACTTTGAACATGCCAGAATGTGTCTCTGAAGAGGCTCGCTCACTCATTCAACAGCTCTTGCAGTTCA  2560

Query 3092  ATCCTCTGGAACGACTTGGTGCTGGAGTTGCTGGTGTTGAAGATATCAAATCTCATCCATTTTTTACCCCTGTG  3165
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2561  ATCCTCTGGAACGACTTGGTGCTGGAGTTGCTGGTGTTGAAGATATCAAATCTCATCCATTTTTTACCCCTGTG  2634

Query 3166  GATTGGGCAGAACTGATGAGA  3186
            |||||||||||||||||||||
Sbjct 2635  GATTGGGCAGAACTGATGAGA  2655

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