Nucleotide Global Alignment

Description

Query:
TRCN0000475115
Subject:
XR_001743499.2
Aligned Length:
3654
Identities:
1147
Gaps:
2460

Alignment

Query    1  ATGCCTTCTGCATCCTGTGATACACTACTGGATGACATCGAAGATATCGTGTCTCAGGAAGATTCAAAACCACA  74
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query   75  AGATAGGCATTTTGTAAGAAAGGATGTTGTCCCGAAGGTACGAAGGCGAAATACCCAAAAATATTTGCAAGAGG  148
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  149  AAGAAAACAGTCCACCAAGTGACAGCACTATTCCAGGCATACAGAAAATTTGGATACGAACATGGGGTTGTTCT  222
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  223  CATAATAATTCAGATGGAGAATATATGGCTGGACAGCTAGCTGCTTATGGCTATAAAATTACAGAAAATGCATC  296
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  297  CGATGCAGATTTATGGCTCCTGAACAGTTGCACTGTAAAAAACCCAGCTGAAGACCACTTTAGAAACTCAATT-  369
                                                                        |.||||.|.|||| 
Sbjct    1  ------------------------------------------------------------TTGAAATTGAATTT  14

Query  370  ----AAAAAAGCTCAAGAGGAGAACAAGAAAATCGTACTGGCTGGATGCGTTCCTCAAGCCCAGCCTCGCCAGG  439
                |||                                 |.|.||    ||..||||    ||       |||
Sbjct   15  TGGCAAA---------------------------------GTTTGA----TTTTTCAA----AG-------AGG  40

Query  440  ACTACCTTAAGGGACTGAG----TATCATTGGGGTTCAGCAGATA-GAT-CGTGTGGTAGAAGTTGTGGAGGAG  507
            |.|..|||...||  ||||    |.|.||||.|        |||| .|| |.|.|..||    ||.|       
Sbjct   41  ATTTTCTTTGTGG--TGAGACTATTTTATTGAG--------GATATTATCCTTCTTTTA----TTAT-------  93

Query  508  ACAA--TTAAAGGTC----ACT--------CTG-----TGAGACTGC--TGGGTCAGAAAAAGGA---TAATGG  557
             |||  ||..|||||    |||        |||     |.|||.|||  |||..||||.|..|||   ||    
Sbjct   94  -CAAACTTTTAGGTCTTCTACTTCCGTCTCCTGTCATCTCAGATTGCTATGGCGCAGAGATGGGAATCTA----  162

Query  558  AAGGCGGCTTGGGGGAGCACGATTGGATTTGCCGAAGATT-AGGAAGAATCCACTGATAGAAATCATTTCCATC  630
               ||.| ||||||              ||||.|...||| |||               ||||           
Sbjct  163  ---GCTG-TTGGGG--------------TTGCTGTTTATTCAGG---------------GAAA-----------  192

Query  631  AATACCGGGTGTCTCAATGCTTGTACCTACTGCAAAACTAAACACGCCAGAGGAAATTTGGCCAGTTATCCAAT  704
            |||..|..||||.|||                      |..|||.||           |||.|.||     |||
Sbjct  193  AATGGCTTGTGTTTCA----------------------TCTACAGGC-----------TGGTCTGT-----AAT  228

Query  705  TGATGAACTAGTAGATAGAGCCAAACAATCTTTTCAAGAGGGTGTTTGTGAGATATGGTTGACCAGTGAAGACA  778
            ||                           |||    .|||||||||||||||||||||||||||||||||||||
Sbjct  229  TG---------------------------CTT----GGAGGGTGTTTGTGAGATATGGTTGACCAGTGAAGACA  271

Query  779  CGGGGGCTTATGGCAGAGATATTGGCACCAATCTCCCCACACTCCTGTGGAAACTGGTTGAAGTGATTCCTGAG  852
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  272  CGGGGGCTTATGGCAGAGATATTGGCACCAATCTCCCCACACTCCTGTGGAAACTGGTTGAAGTGATTCCTGAG  345

Query  853  GGAGCAATGCTGAGGCTTGGCATGACAAATCCGCCCTATATTTTAGAGCATCTGGAGGAAATGGCAAAAATCCT  926
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  346  GGAGCAATGCTGAGGCTTGGCATGACAAATCCGCCCTATATTTTAGAGCATCTGGAGGAAATGGCAAAAATCCT  419

Query  927  TAATCACCCCAGAGTCTACGCTTTTCTGCACATACCAGTCCAGTCTGCCTCCGACAGCGTACTCATGGAAATGA  1000
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  420  TAATCACCCCAGAGTCTACGCTTTTCTGCACATACCAGTCCAGTCTGCCTCCGACAGCGTACTCATGGAAATGA  493

Query 1001  AAAGAGAATACTGTGTGGCTGACTTCAAAAGAGTAGTGGATTTTCTGAAAGAGAAAGTTCCTGGAATAACTATT  1074
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  494  AAAGAGAATACTGTGTGGCTGACTTCAAAAGAGTAGTGGATTTTCTGAAAGAGAAAGTTCCTGGAATAACTATT  567

Query 1075  GCTACAGATATTATCTGTGGTTTTCCTGGAGAAACAGATCAGGATTTTCAAGAAACAGTGAAACTTGTTGAAGA  1148
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  568  GCTACAGATATTATCTGTGGTTTTCCTGGAGAAACAGATCAGGATTTTCAAGAAACAGTGAAACTTGTTGAAGA  641

Query 1149  GTACAAATTCCCAAGCCTGTTTATTAACCAATTTTACCCAAGACCAGGAACTCCTGCTGCAAAAATGGAACAAG  1222
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  642  GTACAAATTCCCAAGCCTGTTTATTAACCAATTTTACCCAAGACCAGGAACTCCTGCTGCAAAAATGGAACAAG  715

Query 1223  TTCCAGCACAAGTGAAAAAGCAAAGGACAAAAGATCTTTCTCGGGTGTTTCATTCTTACAGTCCATATGATCAC  1296
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  716  TTCCAGCACAAGTGAAAAAGCAAAGGACAAAAGATCTTTCTCGGGTGTTTCATTCTTACAGTCCATATGATCAC  789

Query 1297  AAGATTGGTGAAAGACAACAAGTGTTAGTAACAGAAGAATCTTTTGATTCCAAGTTTTATGTTGCACACAATCA  1370
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  790  AAGATTGGTGAAAGACAACAAGTGTTAGTAACAGAAGAATCTTTTGATTCCAAGTTTTATGTTGCACACAATCA  863

Query 1371  ATTCTATGAGC---------------------------------------------------------------  1381
            |||||||||||                                                               
Sbjct  864  ATTCTATGAGCAGATAAGAGGTGAAAATGTTTGCTATGGATCATGGCTGGAATTAGAGCTTGAGAAGATGCTGA  937

Query 1382  --------------------------------------------------------------------------  1381
                                                                                      
Sbjct  938  AGGCCAAGGTGGACAAGTCGGATGAGGGATGGGCAGAGGAAGCAGGCTGCCTGTGTCAGAAGGCAGGAAAGCAG  1011

Query 1382  --------------------------------------------------------------------------  1381
                                                                                      
Sbjct 1012  GAGCTGAAGAGGCCCCCAGCATTGACATTCCCCAGGGAATCATCTCAGACTGGGCAGTGCGTCCCCAGGAAACA  1085

Query 1382  --------------------------------------------------------------------------  1381
                                                                                      
Sbjct 1086  GGGGAGCTTTTCAAAGCCCAGACTAAACGTGCTCTGTTCAGTACCGGTGGAGACTGCAGTTGAGGAAGGGCTCC  1159

Query 1382  --------------------------------------------------------------------------  1381
                                                                                      
Sbjct 1160  CAGCACTCCATGTCTGGCCTGCATCGCTTCCCCATTTCCCCATCTCATTAATATACCCCAGAGGGCCATTTTCC  1233

Query 1382  --------------------------------------------------------------------------  1381
                                                                                      
Sbjct 1234  TATTCAGGCCAACCTTCTGCTCAGCCCTGGGGAGGAGCTTGATTGCATTTTGGTTGCCTCTTCTCTCTCCTTTC  1307

Query 1382  --------------------------------------------------------------------------  1381
                                                                                      
Sbjct 1308  TCTTGCCATCTGGGTTTTGCCTCAGCAGGGAACTTTTTTCCCTTCATTTTAAAGGCAGTGGCATGCCTCGTTAG  1381

Query 1382  --------------------------------------------------------------------------  1381
                                                                                      
Sbjct 1382  CTGCTTCCTCCAATTTAAAGCAGTCGGGCTTTTTCCAATTATTAAAACTGGAGGAGGGGAAAACACTGAGCCCT  1455

Query 1382  --------------------------------------------------------------------------  1381
                                                                                      
Sbjct 1456  TCATTCAGATCAAGGCAGCAGATCAAGGAGGGTTATTTTTCCCCAGAATAGTACCAAATCTCCCAGGGTTAGTT  1529

Query 1382  --------------------------------------------------------------------------  1381
                                                                                      
Sbjct 1530  TGGTCTAGAGATTTTCTTATTTTATAAAAACTGATTTAAATGGGCTTTTTATATCCTAACACTAAAGCTCTTTT  1603

Query 1382  --------------------------------------------------------------------------  1381
                                                                                      
Sbjct 1604  AGTTCTTTTTGCCTGCCCTAAGTAATTCACCACCCAGGTGACCTTTTTCTTCTACTTTGATGAAGCAGTGTACT  1677

Query 1382  --------------------------------------------------------------------------  1381
                                                                                      
Sbjct 1678  CAGTGGTCATAAAAATCAAACTCAGACCAAGATTCAATTTTGCCTTTCAGAGAGATTGGCTGTGGAACTCCTGG  1751

Query 1382  --------------------------------------------------------------------------  1381
                                                                                      
Sbjct 1752  CTCTCATCTGACTTTTCTGTCTCTATAACTAAGCATATCAAAGATTTTCTAGGAATTATTTTTCTAAATAAGAT  1825

Query 1382  --------------------------------------------------------------------------  1381
                                                                                      
Sbjct 1826  GAGTTCCAGAGATGAAGATTGTATCTAGATATCCAAGTATTACTGGATTAGAACTGGTCTATTTATTTTGGATT  1899

Query 1382  --------------------------------------------------------------------------  1381
                                                                                      
Sbjct 1900  CTAACTTGAAAAGACTGGCAAGTCGCTGCAGTGCTAAAATAGAAGTGTAAGGGAGACATCACACACACAAGCTA  1973

Query 1382  --------------------------------------------------------------------------  1381
                                                                                      
Sbjct 1974  CCTGTGGGTCCCAAAGGAAGGGAAACGTTTGCTTGAAGTAAACAAGTACTTTTATCAGGAATCTCTAGTGGAAA  2047

Query 1382  --------------------------------------------------------------------------  1381
                                                                                      
Sbjct 2048  GAGACCACCTGACAGTTTCCTGTGAACAAGCCAAAGTACCCTTCAGAGGACTGGTTCTAGATGGAGGTAGATTC  2121

Query 1382  --------------------------------------------------------------------------  1381
                                                                                      
Sbjct 2122  CCAGGACTGACAAACACATGCCTTTTCTAACAGAGCAAGGGAAATGAACGGCAGCTGTTAGTTTCAGGAGTCAT  2195

Query 1382  --------------------------------------------------------------------------  1381
                                                                                      
Sbjct 2196  TTAGCTCCAAACAGCAGTGTACAGTGTTATTGGAAGGTTCTTTTAAATGTACCTCCTTCTCCCTCAAAACACAG  2269

Query 1382  --------------------------------------------------------------------------  1381
                                                                                      
Sbjct 2270  CACACACATGCACGGACACAAACACGCAGGCCTGTTTGAAGTGTCTTTTCAAACCATTACTCTGACAGCTCACT  2343

Query 1382  --------------------------------------------------------------------------  1381
                                                                                      
Sbjct 2344  TGGAAAGTATTAAAAGTATAAGGCTTTCATCAGTATTGTCTCGGTTTTCCTCATTGCATGGAATAGCCAAAAGC  2417

Query 1382  --------------------------------------------------------------------------  1381
                                                                                      
Sbjct 2418  AAGATATCAAAGGCCTGTCCAGAAGTGGCTGGCTGATTGCTGGGGGATTTCCCAGGTCTGCCTTCCACGTGCCT  2491

Query 1382  --------------------------------------------------------------------------  1381
                                                                                      
Sbjct 2492  CAGGACATCAGGCACATCCTGCACTGGAAAAGCACTGCCCAGGGGCCCAGGAGCCCCTCCCAGGAGTGCCTTTC  2565

Query 1382  --------------------------------------------------------------------------  1381
                                                                                      
Sbjct 2566  CTTCCTGCAGGCTCTGCAGACCCTTGAGCAGCTAGAAGATAGAGTCCACTTTGTAGGGGATCCCAGAACAGAAA  2639

Query 1382  -------------------------------------AGGTTTTAGTGCCAAAGAACCCTGCGTTCATGGGGAA  1418
                                                 |||||||||||||||||||||||||||||||||||||
Sbjct 2640  AATGACATTGAGGGACAATGAGGAAACCTGGATAATTAGGTTTTAGTGCCAAAGAACCCTGCGTTCATGGGGAA  2713

Query 1419  GATGGTTGAAGTGGACATCTATGAATCAGGCAAACATTTTATGAAAGGGCAGCCAGTATCTGATGCCAAAGTGT  1492
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2714  GATGGTTGAAGTGGACATCTATGAATCAGGCAAACATTTTATGAAAGGGCAGCCAGTATCTGATGCCAAAGTGT  2787

Query 1493  ACACGCCCTCCATCAGCAAACCGCTAGCAAAGGGAGAAGTCTCGGGTTTGACAAAGGACTTCAGAAATGGGCTT  1566
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2788  ACACGCCCTCCATCAGCAAACCGCTAGCAAAGGGAGAAGTCTCGGGTTTGACAAAGGACTTCAGAAATGGGCTT  2861

Query 1567  GGGAACCAGCTGAGTTCAGGATCCCACACCTCTGCTGCATCTCAGTGTGACTCAGCGAGTTCCAGAATGGTGCT  1640
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2862  GGGAACCAGCTGAGTTCAGGATCCCACACCTCTGCTGCATCTCAGTGTGACTCAGCGAGTTCCAGAATGGTGCT  2935

Query 1641  GCCCATGCCAAGGCTACATCAAGACTGTGCGCTGAGGATGTCCGTGGGCTTGGCTCTGCTGGGTCTTCTTTTTG  1714
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2936  GCCCATGCCAAGGCTACATCAAGACTGTGCGCTGAGGATGTCCGTGGGCTTGGCTCTGCTGGGTCTTCTTTTTG  3009

Query 1715  CTTTTTTTGTCAAGGTCTATAAT---------------------------------------------------  1737
            |||||||||||||||||||||||                                                   
Sbjct 3010  CTTTTTTTGTCAAGGTCTATAATTAGAATACAACTAATGGAAACATCTATAAAGAAGAATACATTTCTAATTAA  3083

Query 1738  ----------------------------  1737
                                        
Sbjct 3084  AATCTTCAATGAACAGGAAAGCGACATC  3111

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