Nucleotide Global Alignment

Description

• Query: TRCN0000475181
• Subject: XM_011245177.1
• Aligned Length: 2196
• Identities: 1813
• Gaps: 54

Alignment

Query    1  ATGGAGGGCTCACGTCCCCGCGCCCCGAGCGGCCACTTAGCGCCGTCGCCGCCGGCTTTCGACGGCGAGCTGGA  74
            |||||||||||||||||||||..||.|..|||||||.|||.|||.||.||.||.||.|||||||||||||||||
Sbjct    1  ATGGAGGGCTCACGTCCCCGCATCCTGGTCGGCCACCTAGAGCCTTCCCCACCAGCCTTCGACGGCGAGCTGGA  74

Query   75  TCTGCAGCGATACTCCAACGGGCCAGCCGTGAGCG------------CAGGGTCGCTCGGGATGGGAGCGGTGA  136
            |||||||||.|||||||||||.||||..||.||.|            |.||.||||..|||||||||||.|||.
Sbjct   75  TCTGCAGCGCTACTCCAACGGACCAGGTGTCAGTGGGACTCCAGGACCCGGCTCGCCTGGGATGGGAGCAGTGG  148

Query  137  GCTGGTCTGAGAGTCGTGCAGGCGAACGGCGCTTCCCCTGCCCTGTATGCGGGAAGCGCTTCCGCTTCAACTCT  210
            |.||||||||||.||||||||||||||||||||||||.||.|||||.|||||.|||||||||||.|||||.||.
Sbjct  149  GTTGGTCTGAGACTCGTGCAGGCGAACGGCGCTTCCCTTGTCCTGTGTGCGGAAAGCGCTTCCGATTCAATTCC  222

Query  211  ATCCTTGCTTTGCACCTGCGGGCGCACCCAGGAGCCCAGGCCTTCCAGTGCCCTCACTGCGGCCACCGCGCGGC  284
            |||.|.||||||||||||.|.||.|||||.||.|||||.||||||||||||||.||.||||||||||||||.||
Sbjct  223  ATCTTGGCTTTGCACCTGAGAGCCCACCCGGGCGCCCAAGCCTTCCAGTGCCCACATTGCGGCCACCGCGCAGC  296

Query  285  GCAGCGGGCTCTGCTGCGCTCGCACCTGCGCACACACCAGCCCGAGCGCCCACGTAGTCCTGCTGCACGCCTGT  358
            |||||||||||||||||||||.|||||.||.||.||||||||.|||||.|||||.||.|||||||||||.||||
Sbjct  297  GCAGCGGGCTCTGCTGCGCTCACACCTCCGAACGCACCAGCCGGAGCGTCCACGCAGCCCTGCTGCACGGCTGT  370

Query  359  TGCTGGAGTTGGAAGAGCGCGCGCTACTACGCGAGGCCCGACTGGGGAGAGCCCGAAGCTCAGGGGGCATGCAG  432
            |||||||||||||.||.|||||.||.||.|||||.||||||||.|||||||||.||||||||||.|||||||||
Sbjct  371  TGCTGGAGTTGGAGGAACGCGCCCTGCTTCGCGAAGCCCGACTCGGGAGAGCCAGAAGCTCAGGCGGCATGCAG  444

Query  433  GCCACCCCTGCCACTGAGGGTCTGGCGCGGCCCCAGGCTCCTTCATCGTCCGCCTTCCGTTGCCCCTACTGCAA  506
            .|||.|||||||.|.|||||.|||||.||.||.||||..|||||.||.||.||||||||||||||.|.||||||
Sbjct  445  TCCAGCCCTGCCGCAGAGGGCCTGGCTCGCCCTCAGGTCCCTTCCTCATCTGCCTTCCGTTGCCCTTTCTGCAA  518

Query  507  AGGCAAGTTTCGCACCTCGGCGGAGCGCGAACGCCACCTGCACATCCTGCATAGGCCCTGGAAGTGCGGCCTGT  580
            ||||||||||||||||||.||||||||.||||||||||||||.||||||||.|||||||||||||||.||.|||
Sbjct  519  AGGCAAGTTTCGCACCTCAGCGGAGCGGGAACGCCACCTGCATATCCTGCACAGGCCCTGGAAGTGCAGCTTGT  592

Query  581  GCAGTTTCGGCTCCAGCCAGGAGGAGGAGCTGCTGCACCACAGCCTGACGGCCCACGGGGCTCCCGAGCGTCCC  654
            |||||||.|||||||||||||||||||||.|||||||||||||.||||||||||||||||||.|||||||.|||
Sbjct  593  GCAGTTTTGGCTCCAGCCAGGAGGAGGAGTTGCTGCACCACAGTCTGACGGCCCACGGGGCTTCCGAGCGCCCC  666

Query  655  CTGGCGGCCACCTCCGCTGCGCCTCCGCCTCAGCCTCAGCCTCCACCCCAGCCCGAACCCAGATCAGTTCCCC-  727
            ||||||||.||.|         ||.|||||.|.||.|.||||||||||||||..|||||||||||   |.||| 
Sbjct  667  CTGGCGGCTACAT---------CTACGCCTGAACCCCCGCCTCCACCCCAGCAAGAACCCAGATC---TGCCCT  728

Query  728  --AGCCGGAGCCGGA------------GCCGGAGCCCGAACGTGAGGCAACCCCGACCCCAGCTCCTGCCGCTC  787
              ||||.|||||.||            |||.|||||.||.||.|||||||.|||..|||||.|||||||..|||
Sbjct  729  TGAGCCTGAGCCTGAGCCTGAACCTAGGCCAGAGCCTGACCGGGAGGCAAACCCTGCCCCAACTCCTGCACCTC  802

Query  788  CCGAGGAGCCCCCAGCGCCTCCGGAGTTCCGCTGCCAAGTGTGCGGCCAGAGCTTTACACAGTCTTGGTTTCTC  861
            |.|||||||||||.|||||.||.||.|||||.|||||.||||||||||||||||||||||||||.|||||||||
Sbjct  803  CGGAGGAGCCCCCTGCGCCACCTGAATTCCGTTGCCAGGTGTGCGGCCAGAGCTTTACACAGTCCTGGTTTCTC  876

Query  862  AAGGGCCACATGCGTAAGCACAAGGCCTCCTTCGATCATGCGTGTCCGGTGTGCGGCCGCTGCTTCAAGGAGCC  935
            |||||.||||||||.|||||||||||||||||.|||||||||||.||.||.||.||.|||||||||||||||||
Sbjct  877  AAGGGTCACATGCGCAAGCACAAGGCCTCCTTTGATCATGCGTGCCCCGTATGTGGTCGCTGCTTCAAGGAGCC  950

Query  936  CTGGTTCCTTAAGAACCACATGAAGGTGCACGCCAGCAAGCTGGGCCCACTGCGTGCCCCGGGGCCTGCCTCCG  1009
            |||||||||||||||||||||||||||||||.|||||||||||||.||..|||||||.||.||.||||.|||.|
Sbjct  951  CTGGTTCCTTAAGAACCACATGAAGGTGCACACCAGCAAGCTGGGTCCTTTGCGTGCTCCAGGCCCTGGCTCTG  1024

Query 1010  GGCCTGCCCGCGCCCCCCAGCCTCCTGACCTCGGCCTGCTGGCCTATGAGCCGTTGGGCCCAGCGCTCCTCTTG  1083
            ..||||||.|.|||||.||||||||.|||||..||||.|||||.||||||||..|||||||.||.||||||.||
Sbjct 1025  CACCTGCCAGGGCCCCTCAGCCTCCCGACCTGAGCCTACTGGCATATGAGCCACTGGGCCCTGCACTCCTCCTG  1098

Query 1084  GCCCCGGCTCCCACCCCGGCCGAGCGCCGTGAGCCCCCGAGCCTCTTGGGCTACCTGAGCCTGCGAGCTGGCGA  1157
            |||||.||.|||.|.|||||.||||||||.||||||||.||||||||.|||||||||||..|.||||||||.||
Sbjct 1099  GCCCCAGCACCCGCTCCGGCTGAGCGCCGAGAGCCCCCAAGCCTCTTAGGCTACCTGAGTGTACGAGCTGGGGA  1172

Query 1158  GGGCCGGCCCAACGGCGAGGGTGCTGAGCCC----GGTCCCGGCCGCAGCTTCGGAGGCTTCCGCCCGCTGTCC  1227
            .|..||.|||||.||.||||||||||| |||    |||   |||||.||||..|||||.||||||||.|||.|.
Sbjct 1173  AGTACGACCCAATGGTGAGGGTGCTGA-CCCTGGAGGT---GGCCGAAGCTATGGAGGGTTCCGCCCACTGCCT  1242

Query 1228  TCTGCTCTCCCGGCCCGGGCTCGCCGGCACCGTGCGGAGGAGCCTGAGGAAGAAGAGGAGGTGGTGGAGGCCGA  1301
            ||.|||||.||...|||||||||.||.||||||.|.|||||.||.||.||.|||||.||.|||||||||||.||
Sbjct 1243  TCAGCTCTTCCCAACCGGGCTCGGCGACACCGTACAGAGGAACCAGAAGAGGAAGAAGAAGTGGTGGAGGCTGA  1316

Query 1302  GGAGGAAACCTGGGCCCGGGGCAGGTCGCTGGGCTCTCTGGCTTCCCTGCACCCGCGCCCGGGTGAGGGACCGG  1375
            .|||||.|.|||||||||.|||||||||||||||||||||.|||||||||||||...|||.||||||||..|.|
Sbjct 1317  AGAGGAGAGCTGGGCCCGAGGCAGGTCGCTGGGCTCTCTGACTTCCCTGCACCCCAACCCAGGTGAGGGGTCAG  1390

Query 1376  GGCACTCTGCCTCTGCTGCTGGGGCCCAGGCAAGATCGACCGCCACGCAGGAAGAGAATGGGCTGTTGGTTGGA  1449
            |.||..||||..||||.||.|||.|||||||.|||||.||.|||||.||.|||||.||.||||||.||||||||
Sbjct 1391  GACAGCCTGCACCTGCCGCGGGGACCCAGGCGAGATCCACGGCCACCCAAGAAGAAAACGGGCTGCTGGTTGGA  1464

Query 1450  GGGACCCGGCCTGAAGGGGGCCGGGGCGCCACCGGCAAGGATTGTCCTTTCTGCGGAAAATCTTTCCGCTCAGC  1523
            |||||.||..||||||.||||||.||.|||||.||||||||.||.||.|||||.|||||||||||||||||.||
Sbjct 1465  GGGACACGATCTGAAGCGGGCCGTGGGGCCACTGGCAAGGACTGCCCCTTCTGTGGAAAATCTTTCCGCTCGGC  1538

Query 1524  ACATCACCTCAAAGTGCATCTGCGAGTGCACACAGGCGAGCGGCCCTACAAGTGTCCGCACTGCGACTACGCGG  1597
            .||||||.|.|||||||||||.||.|||||||||||.|||||.||||||||||||||.|||||||||||.||.|
Sbjct 1539  GCATCACTTAAAAGTGCATCTCCGTGTGCACACAGGTGAGCGTCCCTACAAGTGTCCACACTGCGACTATGCAG  1612

Query 1598  GCACCCAGTCCGGCTCGCTCAAGTATCACCTACAGCGCCACCACCGGGAGCAGAGGAGCGGGGCCGGCCCCGGG  1671
            |.||||||||.||||||||||||||||||||.|||||.||||||||.||||||||||||.|.||.||.||.|||
Sbjct 1613  GTACCCAGTCGGGCTCGCTCAAGTATCACCTTCAGCGTCACCACCGAGAGCAGAGGAGCAGTGCGGGTCCTGGG  1686

Query 1672  CCACCCCCGGAGCCACCGCCTCCTTCCCAGCGGGGTTC---GGCCCCGCAATCTGGAGCCAAGCCGTCTCCGCA  1742
            ||.|||||.||.||.|||||.||||||||||||||.||   |...|||||.||.|||||||||||..|||.|  
Sbjct 1687  CCTCCCCCAGAACCCCCGCCACCTTCCCAGCGGGGCTCACTGCAGCCGCAGTCAGGAGCCAAGCCAACTCAG--  1758

Query 1743  GCCT--GCGACCTGGGTGGAGGGCGCCTCAAGTCCCCGGCCTCCTTCTAGCGGTGCTGGGCCGGGGTCCCGTCG  1814
            ||||  ||.||||||||.||||||.|..|||||.|||||||||||||.|||.|..|.||.||.|||||||||.|
Sbjct 1759  GCCTCAGCCACCTGGGTAGAGGGCACTGCAAGTACCCGGCCTCCTTCGAGCAGCACCGGACCAGGGTCCCGTAG  1832

Query 1815  GAAGCCCGCCAGCCCTGGGAGGACCCTGCGCAACGGGCGAGGCGGTGAGGCCGAACCCCTGGACCTGTCCTTGC  1888
            ||||||.||.||||||||||||||||||||.|||||||||||.|||||.|||||||||||||||||||||.|.|
Sbjct 1833  GAAGCCTGCTAGCCCTGGGAGGACCCTGCGAAACGGGCGAGGTGGTGAAGCCGAACCCCTGGACCTGTCCCTAC  1906

Query 1889  GGGCAGGGCCGGGAGGCGAGGCCGGGCCTGGGGGTGCCCTCCACCGCTGCCTCTTCTGCCCGTTCGCCACTGGA  1962
            ||||.||.||||||||.|||||||||.|.|||||||||||.||||||||||||||||||||.||.|||||||||
Sbjct 1907  GGGCGGGCCCGGGAGGTGAGGCCGGGGCAGGGGGTGCCCTTCACCGCTGCCTCTTCTGCCCCTTTGCCACTGGA  1980

Query 1963  GCCCCAGAGCTCATGGCCTTGCACCTTCAAGTGCACCACAGCCGCCGGGCTAGGGGCCGCCGGCCACCCCAGGC  2036
            ||.||.|||||||||||||||||.||.|||||.|||||.|||||.||.|||.||||||||||||..||||..||
Sbjct 1981  GCTCCTGAGCTCATGGCCTTGCATCTGCAAGTACACCATAGCCGTCGTGCTCGGGGCCGCCGGCAGCCCCGAGC  2054

Query 2037  TGACGCGTCCCCGCCCTATGCCCGAGTACCATCAGGAGAGACCCCTCCCAGTCCTTCGCAGGAAGGGGAGGAGG  2110
            .|||.||||.||..||||||.|||.|.||||||||||||||||||||||||||||.|.|..||||.|||||...
Sbjct 2055  CGACACGTCTCCAACCTATGTCCGGGCACCATCAGGAGAGACCCCTCCCAGTCCTCCACTAGAAGAGGAGGGCA  2128

Query 2111  GCTCCGGGCTGTCCAGACCCGGAGAGGCAGGGCTGGGGGGGCAAGAACGG  2160
            ||.|.||||||||.|||.|||||||||||||.||.|||||||||||||||
Sbjct 2129  GCCCAGGGCTGTCTAGATCCGGAGAGGCAGGTCTTGGGGGGCAAGAACGG  2178