Nucleotide Global Alignment
Description
- Query:
- TRCN0000475853
- Subject:
- XM_006517464.3
- Aligned Length:
- 3069
- Identities:
- 1473
- Gaps:
- 1437
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ATGGAGCCCCGGGCTGCCACGACTGGCGAGCTCGTGCGGGCCGCGTCCCCCTCCTTCCAGGCCCGGCTCTGGAA 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GAACCTGCAGCTGGGGGTGGGCAAGGGCAAGGGCGGCGGAGGCGGGCGCGCTGGGGGCCCCGAGCACCGCACTG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CGGCCACTCCGACCCCGTCCCCGCCGCCCCCGGGGACCACGCAGGACGCCCTGGCCGGTGTGGGAAGTACTGGC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 AGCAGGTGGAGCGGCTTCAAGAAGCGGAAGCAAGTGCTGGACCGAGTGTTCTCCTCCTCACAGCCCAACCTGTG 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 CTGCTCCTCACCAGAGCCCCTGGAGCCAGGCGGAGCAGGCAGAGCCGAGCAAGGGTCCACGCTGCGCCGCCGCC 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 TACGCGAACATCTGCTGCCCGTGGCTAAGGGGTCCTCGACAGCCACAGGGACAGGCGGAGTGACGCCTCCTGGC 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 GGACGCTCTCCGGACTCAGCTCCTTCTTCGTCTTCCGCCTCATCTTCCCTGTCCTCTTCTCCCCAACCGCCCCC 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 GAGGGGGGACCGCGTCCGTGATGAGAGTACACGGCGTGGGGGCCCTGGGGTGCACCTGTGCCACCAAAAGAGCT 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 CCTCTCTGCCCGGAACCGCGTGCCTGGAGCAGTTGCTGGAACCGGCGCCACCCCCCGCAGAACCGGCCCGGGGT 666
Query 1 -------------ATGCTAGACAGCTGC--AAGCTGA-AAAGTGC----CTGCAATTTGCCATTTATTTGTAAT 54
|.||| |||| ||| || |.||.|| ||||| |||
Sbjct 667 CCCGCCGAACCCCAGGCT------CTGCAGAAG--GACATAGAGCGCGACTGCA----GCC------------- 715
Query 55 AAGAAAATAA-TAAACACTGCTGGAACCAGTAATGCAGAAGTCCCCTTGGCTGATCCCGGAATGTACCAGCTGG 127
||||||||| | ||.|.|||||.||||||||||||.|||||.||||||||||||||||||||||||.|||
Sbjct 716 -AGAAAATAAGT----ACAGTTGGAAACAGTAATGCAGATGTCCCTTTGGCTGATCCCGGAATGTACCAGTTGG 784
Query 128 ACATTACATTAAGAAGGGGTCAAAGTTTAGCTGCTCGAGATCGAGGAGGGACGAGTGATCCATATGTGAAGTTT 201
|.||.|||.|||||||||||||||||||||||||.||.||||||||||||||.||.|||||.||||||||||||
Sbjct 785 ATATCACACTAAGAAGGGGTCAAAGTTTAGCTGCCCGTGATCGAGGAGGGACAAGCGATCCGTATGTGAAGTTT 858
Query 202 AAAATCGGAGGAAAAGAAGTTTTTAGAAGTAAGATAATACACAAGAACCTCAACCCTGTGTGGGAAGAAAAAGC 275
|||||.|||.|||||||||||||||||||.||.||.||.|||||||||||.||.|||||||||||.|||||.||
Sbjct 859 AAAATTGGAAGAAAAGAAGTTTTTAGAAGCAAAATTATCCACAAGAACCTAAATCCTGTGTGGGAGGAAAAGGC 932
Query 276 TTGTATTCTGGTTGATCATCTTAGGGAGCCATTGTATATAAAGGTATTTGACTATGATTTTGGACTACAGGATG 349
|||..|.||..||||.||||||||.||||||.|.|||||.||||||||||||||||||||||||||.||.||||
Sbjct 933 TTGCGTGCTCATTGACCATCTTAGAGAGCCACTATATATCAAGGTATTTGACTATGATTTTGGACTGCAAGATG 1006
Query 350 ACTTTATGGGCTCAGCCTTTCTGGATCTGACACAATTGGAGTTAAACAGGCCCACAGATGTGACCCTTACTCTG 423
||||||||||||||||||||||.|||||.||.||.|||||||||||||||.||||||||||.|||||.||||||
Sbjct 1007 ACTTTATGGGCTCAGCCTTTCTTGATCTCACTCAGTTGGAGTTAAACAGGTCCACAGATGTTACCCTAACTCTG 1080
Query 424 AAAGATCCTCATTATCCTGACCATGATCTTGGAATCATTTTGCTCTCAGTCATCCTTACCCCTAAAGAAGGAGA 497
|||||.||.|||||||||||||||||.|||||||||||||||||.||||||||||||||.|||||.|||||.||
Sbjct 1081 AAAGACCCCCATTATCCTGACCATGACCTTGGAATCATTTTGCTGTCAGTCATCCTTACGCCTAAGGAAGGTGA 1154
Query 498 GTCCAGGGATGTG------------------------------------------------ACAATGCTAATGA 523
...|||||||||| |||||||||||||
Sbjct 1155 ACACAGGGATGTGCAGAGTTCAATACACAGCTTTCTTCCTTGGAGAATTTGTGACATAAAAACAATGCTAATGA 1228
Query 524 GGAAGAGTTGGAAAAGATCAAGTAAGGAACTTTCAGAAAATGAAGTGGTTGGATCTTATTTCTCTGTGAAGTCT 597
|||||||||||||||||||.||||||
Sbjct 1229 GGAAGAGTTGGAAAAGATCCAGTAAG------------------------------------------------ 1254
Query 598 CTCTTTTGGAGGACGTGCGGCAGGCCAGCTCTTCCTGTCCTGGGCTTCTGCAGAGCAGAGCTTCAGAATCCTTA 671
Sbjct 1255 -------------------------------------------------------------------------- 1254
Query 672 TTGCAAAAATGTACAATTTCAGACCCAAAGTTTACGCCTATCAGACCTACACAGAAAATCGCATCTTTGGAGAG 745
|||||||||||||||||||||||.||.||||..|||||.|||||.||.||||||||||
Sbjct 1255 ----------------TTTCAGACCCAAAGTTTACGCCTGTCCGACCAGCACAGGAAATCACACCTTTGGAGAG 1312
Query 746 GAATAGTCAGCATCACCTTGATTGAAGGGAGAGACCTCAAGGCCATGGATTCCAACGGGTTGAGCGATCCCTAC 819
|||||||||||||||||||||||||.||..||||.|||||.||.|||||||||||.||||||||.|||||.||.
Sbjct 1313 GAATAGTCAGCATCACCTTGATTGAGGGTCGAGATCTCAAAGCAATGGATTCCAATGGGTTGAGTGATCCATAT 1386
Query 820 GTGAAGTTCCGGCTTGGGCATCAGAAGTACAAGAGCAAGATTATGCCAAAAACGTTGAATCCTCAGTGGAGGGA 893
|||||||||||||||||.|||||||||||||||||||||||||||||.|||||.|||||.||||||||||||||
Sbjct 1387 GTGAAGTTCCGGCTTGGCCATCAGAAGTACAAGAGCAAGATTATGCCCAAAACTTTGAACCCTCAGTGGAGGGA 1460
Query 894 ACAATTTGATTTTCACCTTTATGAAGAAAGAGGAGGAGTCATTGATATCACTGCATGGGACAAAGATGCTGGGA 967
.|||||||||||.||.||.||||||||||||||.||..||||.||.||||||||.|||||||||||||||||||
Sbjct 1461 GCAATTTGATTTCCATCTCTATGAAGAAAGAGGTGGGATCATGGACATCACTGCCTGGGACAAAGATGCTGGGA 1534
Query 968 AAAGGGATGATTTCATTGGCAGGTGCCAGGTCGACCTGTCAGCCCTCAGTAGGGAACAGACGCACAAGCTGGAG 1041
||||.|||||.||.|||||.|||||||||||.||||||||..|||||||||||||.||.||.||||||||||||
Sbjct 1535 AAAGAGATGACTTTATTGGAAGGTGCCAGGTTGACCTGTCTTCCCTCAGTAGGGAGCAAACTCACAAGCTGGAG 1608
Query 1042 TTGCAGCTGGAAGAGGGTGAGGGACACCTGGTGCTGCTGGTCACTCTGACAGCATCAGCCACAGTCAGCATCTC 1115
||.||.|||||||||||||||||.||||||||.|||||.||||||||||||||.||.|||||||||.|.|||||
Sbjct 1609 TTACATCTGGAAGAGGGTGAGGGCCACCTGGTTCTGCTTGTCACTCTGACAGCCTCGGCCACAGTCTGTATCTC 1682
Query 1116 TGACCTGTCTGTCAACTCCCTGGAGGACCAGAAGGAACGAGAGGAGATATTAAAGAAATATAGCCCATTGAGGA 1189
||||||.||||||||.|||.||||||||||||||||.||.||.|||||||||||||.||||||||||.||||||
Sbjct 1683 TGACCTCTCTGTCAATTCCATGGAGGACCAGAAGGAGCGGGAAGAGATATTAAAGAGATATAGCCCACTGAGGA 1756
Query 1190 TATTTCACAACCTGAAAGATGTGGGATTTCTCCAGGTGAAAGTCATCAGAGCGGAAGGGTTAATGGCTGCCGAC 1263
|||||.|||||||.|||||.||||||||||||||||||||||||||||||||.|||||.||.||||||||.||.
Sbjct 1757 TATTTAACAACCTAAAAGACGTGGGATTTCTCCAGGTGAAAGTCATCAGAGCAGAAGGTTTGATGGCTGCAGAT 1830
Query 1264 GTCACTGGAAAAAGTGACCCATTTTGTGTGGTAGAACTGAACAACGATAGACTGCTAACACATACTGTCTACAA 1337
|||||.||.||||||||.|||||||||||.||||||||||||||.|||||.|||||||||||.|||||.|||||
Sbjct 1831 GTCACAGGTAAAAGTGATCCATTTTGTGTAGTAGAACTGAACAATGATAGGCTGCTAACACACACTGTGTACAA 1904
Query 1338 AAATCTCAATCCTGAGTGGAATAAAGTCTTCACGTTCAACATTAAAGATATCCATTCAGTTCTTGAAGTGACAG 1411
|||.|||||||||||||||||.|||||.|||||.||.|||||||||||.||.||||||||||||||||||||||
Sbjct 1905 AAACCTCAATCCTGAGTGGAACAAAGTGTTCACATTTAACATTAAAGACATTCATTCAGTTCTTGAAGTGACAG 1978
Query 1412 TTTATGATGAAGATCGGGATCGAAGTGCTGACTTTCTGGGCAAAGTTGCTATACCATTGCTGTCTATTCAAAAT 1485
||||||||||||||||.||.||.|||||.|||||||||||||.|||.|||||||||||||||||||||||||||
Sbjct 1979 TTTATGATGAAGATCGTGACCGGAGTGCCGACTTTCTGGGCAGAGTCGCTATACCATTGCTGTCTATTCAAAAT 2052
Query 1486 GGTGAACAGAAAGCCTACGTCTTGAAAAACAAGCAGCTGACAGGGCCAACAAAGGGGGTCATCTATCTTGAAAT 1559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2053 GGTGAACAGAAAGCCTACGTCTTGAAAAACAAGCAGCTGACAGGGCCAACAAAGGGGGTCATCTATCTTGAAAT 2126
Query 1560 AGATGTGATTTTTAATGCTGTGAAAGCCAGCTTACGAACATTAATACCCAAAGAACAGAAGTACATTGAAGAGG 1633
||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||
Sbjct 2127 AGATGTGATTTTTAATGCTGTGAAAGCCAGCTTACGAACATTAATACCCAAAGAACGGAAGTACATTGAAGAGG 2200
Query 1634 AAAACAGACTCTCTAAACAGCTGCTACTAAGAAACTTTATCAGAATGAAACGTTGTGTCATGGTGCTGGTAAAT 1707
|||||||||||||||||||||||||.|||||||||||||||||||..||||||||||||||.|||||.|||||.
Sbjct 2201 AAAACAGACTCTCTAAACAGCTGCTTCTAAGAAACTTTATCAGAACAAAACGTTGTGTCATAGTGCTTGTAAAC 2274
Query 1708 GCTGCATACTACGTTAATAGTTGCTTTGATTGGGATTCACCCCCAAGGAGTCTCGCTGCTTTTGTG-------- 1773
||||||||||||||||||||||||||||||||||||||.||||||||||||||.||||||||||||
Sbjct 2275 GCTGCATACTACGTTAATAGTTGCTTTGATTGGGATTCGCCCCCAAGGAGTCTTGCTGCTTTTGTGCTCTTTCT 2348
Query 1774 --GCCTTGTATGGGACTTT--------CAT-----------------------TAATGTC-------------- 1800
.|.||||.|||.||||| ||| ||.||.|
Sbjct 2349 CCTCATTGTCTGGAACTTTGAGCTCTACATGATACCACTGCTGCTGTTGTTACTATTGACATGGAACTACTTCC 2422
Query 1801 -------------------------------------------------------------------------- 1800
Sbjct 2423 TGATAATATCCGGGAAAGACAACAGGCAACGGGACACAGTAGTGGAGGACATGCTGGAGGACGAAGAGGAAGAA 2496
Query 1801 -------------------------------------------------------------------------- 1800
Sbjct 2497 GATGACAGAGATGACAAGGATGGTGAAAAGAAAGGATTTATAAATAAAATCTATGCGATCCAGGAAGTCTGTGT 2570
Query 1801 -------------------------------------------------------------------------- 1800
Sbjct 2571 CAGTGTGCAGAACATCCTAGATGAAGTGGCTTCCCTTGGTGAAAGGATAAAGAATACTTTCAACTGGACTGTCC 2644
Query 1801 -------------------------------------------------------------------------- 1800
Sbjct 2645 CCTTCTTAAGCTGGCTGGCCATTGTAGCCCTGTGTGTGTTCACCGCCATTCTGTACTTCATCCCACTGAGATAC 2718
Query 1801 -------------------------------------------------------------------------- 1800
Sbjct 2719 ATTGTTCTTGTTTGGGGAATTAATAAATTTACAAAAAAGCTTCGGAGTCCATATGCAATTGATAACAATGAACT 2792
Query 1801 -------------------------------------------------------------------------- 1800
Sbjct 2793 ACTTGACTTCCTTTCCAGAGTTCCTTCAGATGTACAAGTGGTGCAGTACCAAGAACTGAAACCAGATCATTCTC 2866
Query 1801 ----------------------------------- 1800
Sbjct 2867 ATAGCCCATACAAAAGGAAGAAAAACAACCTTGGC 2901
