Nucleotide Global Alignment
Description
- Query:
- TRCN0000475853
- Subject:
- XM_006517467.3
- Aligned Length:
- 3021
- Identities:
- 1435
- Gaps:
- 1428
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ATGGAGCCCCGGGCTGCCACGACTGGCGAGCTCGTGCGGGCCGCGTCCCCCTCCTTCCAGGCCCGGCTCTGGAA 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GAACCTGCAGCTGGGGGTGGGCAAGGGCAAGGGCGGCGGAGGCGGGCGCGCTGGGGGCCCCGAGCACCGCACTG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CGGCCACTCCGACCCCGTCCCCGCCGCCCCCGGGGACCACGCAGGACGCCCTGGCCGGTGTGGGAAGTACTGGC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 AGCAGGTGGAGCGGCTTCAAGAAGCGGAAGCAAGTGCTGGACCGAGTGTTCTCCTCCTCACAGCCCAACCTGTG 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 CTGCTCCTCACCAGAGCCCCTGGAGCCAGGCGGAGCAGGCAGAGCCGAGCAAGGGTCCACGCTGCGCCGCCGCC 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 TACGCGAACATCTGCTGCCCGTGGCTAAGGGGTCCTCGACAGCCACAGGGACAGGCGGAGTGACGCCTCCTGGC 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 GGACGCTCTCCGGACTCAGCTCCTTCTTCGTCTTCCGCCTCATCTTCCCTGTCCTCTTCTCCCCAACCGCCCCC 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 GAGGGGGGACCGCGTCCGTGATGAGAGTACACGGCGTGGGGGCCCTGGGGTGCACCTGTGCCACCAAAAGAGCT 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 CCTCTCTGCCCGGAACCGCGTGCCTGGAGCAGTTGCTGGAACCGGCGCCACCCCCCGCAGAACCGGCCCGGGGT 666
Query 1 -------------ATGCTAGACAGCTGC--AAGCTGA-AAAGTGC----CTGCAATTTGCCATTTATTTGTAAT 54
|.||| |||| ||| || |.||.|| ||||| |||
Sbjct 667 CCCGCCGAACCCCAGGCT------CTGCAGAAG--GACATAGAGCGCGACTGCA----GCC------------- 715
Query 55 AAGAAAATAA-TAAACACTGCTGGAACCAGTAATGCAGAAGTCCCCTTGGCTGATCCCGGAATGTACCAGCTGG 127
||||||||| | ||.|.|||||.||||||||||||.|||||.||||||||||||||||||||||||.|||
Sbjct 716 -AGAAAATAAGT----ACAGTTGGAAACAGTAATGCAGATGTCCCTTTGGCTGATCCCGGAATGTACCAGTTGG 784
Query 128 ACATTACATTAAGAAGGGGTCAAAGTTTAGCTGCTCGAGATCGAGGAGGGACGAGTGATCCATATGTGAAGTTT 201
|.||.|||.|||||||||||||||||||||||||.||.||||||||||||||.||.|||||.||||||||||||
Sbjct 785 ATATCACACTAAGAAGGGGTCAAAGTTTAGCTGCCCGTGATCGAGGAGGGACAAGCGATCCGTATGTGAAGTTT 858
Query 202 AAAATCGGAGGAAAAGAAGTTTTTAGAAGTAAGATAATACACAAGAACCTCAACCCTGTGTGGGAAGAAAAAGC 275
|||||.|||.|||||||||||||||||||.||.||.||.|||||||||||.||.|||||||||||.|||||.||
Sbjct 859 AAAATTGGAAGAAAAGAAGTTTTTAGAAGCAAAATTATCCACAAGAACCTAAATCCTGTGTGGGAGGAAAAGGC 932
Query 276 TTGTATTCTGGTTGATCATCTTAGGGAGCCATTGTATATAAAGGTATTTGACTATGATTTTGGACTACAGGATG 349
|||..|.||..||||.||||||||.||||||.|.|||||.||||||||||||||||||||||||||.||.||||
Sbjct 933 TTGCGTGCTCATTGACCATCTTAGAGAGCCACTATATATCAAGGTATTTGACTATGATTTTGGACTGCAAGATG 1006
Query 350 ACTTTATGGGCTCAGCCTTTCTGGATCTGACACAATTGGAGTTAAACAGGCCCACAGATGTGACCCTTACTCTG 423
||||||||||||||||||||||.|||||.||.||.|||||||||||||||.||||||||||.|||||.||||||
Sbjct 1007 ACTTTATGGGCTCAGCCTTTCTTGATCTCACTCAGTTGGAGTTAAACAGGTCCACAGATGTTACCCTAACTCTG 1080
Query 424 AAAGATCCTCATTATCCTGACCATGATCTTGGAATCATTTTGCTCTCAGTCATCCTTACCCCTAAAGAAGGAGA 497
|||||.||.|||||||||||||||||.|||||||||||||||||.||||||||||||||.|||||.|||||.||
Sbjct 1081 AAAGACCCCCATTATCCTGACCATGACCTTGGAATCATTTTGCTGTCAGTCATCCTTACGCCTAAGGAAGGTGA 1154
Query 498 GTCCAGGGATGTGACAATGCTAATGAGGAAGAGTTGGAAAAGATCAAGTAAGGAACTTTCAGAAAATGAAGTGG 571
...||||||||||
Sbjct 1155 ACACAGGGATGTG------------------------------------------------------------- 1167
Query 572 TTGGATCTTATTTCTCTGTGAAGTCTCTCTTTTGGAGGACGTGCGGCAGGCCAGCTCTTCCTGTCCTGGGCTTC 645
Sbjct 1168 -------------------------------------------------------------------------- 1167
Query 646 TGCAGAGCAGAGCTTCAGAATCCTTATTGCAAAAATGTACAATTTCAGACCCAAAGTTTACGCCTATCAGACCT 719
|||||||||||||||||||||||.||.||||.
Sbjct 1168 ------------------------------------------TTTCAGACCCAAAGTTTACGCCTGTCCGACCA 1199
Query 720 ACACAGAAAATCGCATCTTTGGAGAGGAATAGTCAGCATCACCTTGATTGAAGGGAGAGACCTCAAGGCCATGG 793
.|||||.|||||.||.|||||||||||||||||||||||||||||||||||.||..||||.|||||.||.||||
Sbjct 1200 GCACAGGAAATCACACCTTTGGAGAGGAATAGTCAGCATCACCTTGATTGAGGGTCGAGATCTCAAAGCAATGG 1273
Query 794 ATTCCAACGGGTTGAGCGATCCCTACGTGAAGTTCCGGCTTGGGCATCAGAAGTACAAGAGCAAGATTATGCCA 867
|||||||.||||||||.|||||.||.|||||||||||||||||.|||||||||||||||||||||||||||||.
Sbjct 1274 ATTCCAATGGGTTGAGTGATCCATATGTGAAGTTCCGGCTTGGCCATCAGAAGTACAAGAGCAAGATTATGCCC 1347
Query 868 AAAACGTTGAATCCTCAGTGGAGGGAACAATTTGATTTTCACCTTTATGAAGAAAGAGGAGGAGTCATTGATAT 941
|||||.|||||.||||||||||||||.|||||||||||.||.||.||||||||||||||.||..||||.||.||
Sbjct 1348 AAAACTTTGAACCCTCAGTGGAGGGAGCAATTTGATTTCCATCTCTATGAAGAAAGAGGTGGGATCATGGACAT 1421
Query 942 CACTGCATGGGACAAAGATGCTGGGAAAAGGGATGATTTCATTGGCAGGTGCCAGGTCGACCTGTCAGCCCTCA 1015
||||||.|||||||||||||||||||||||.|||||.||.|||||.|||||||||||.||||||||..||||||
Sbjct 1422 CACTGCCTGGGACAAAGATGCTGGGAAAAGAGATGACTTTATTGGAAGGTGCCAGGTTGACCTGTCTTCCCTCA 1495
Query 1016 GTAGGGAACAGACGCACAAGCTGGAGTTGCAGCTGGAAGAGGGTGAGGGACACCTGGTGCTGCTGGTCACTCTG 1089
|||||||.||.||.||||||||||||||.||.|||||||||||||||||.||||||||.|||||.|||||||||
Sbjct 1496 GTAGGGAGCAAACTCACAAGCTGGAGTTACATCTGGAAGAGGGTGAGGGCCACCTGGTTCTGCTTGTCACTCTG 1569
Query 1090 ACAGCATCAGCCACAGTCAGCATCTCTGACCTGTCTGTCAACTCCCTGGAGGACCAGAAGGAACGAGAGGAGAT 1163
|||||.||.|||||||||.|.|||||||||||.||||||||.|||.||||||||||||||||.||.||.|||||
Sbjct 1570 ACAGCCTCGGCCACAGTCTGTATCTCTGACCTCTCTGTCAATTCCATGGAGGACCAGAAGGAGCGGGAAGAGAT 1643
Query 1164 ATTAAAGAAATATAGCCCATTGAGGATATTTCACAACCTGAAAGATGTGGGATTTCTCCAGGTGAAAGTCATCA 1237
||||||||.||||||||||.|||||||||||.|||||||.|||||.||||||||||||||||||||||||||||
Sbjct 1644 ATTAAAGAGATATAGCCCACTGAGGATATTTAACAACCTAAAAGACGTGGGATTTCTCCAGGTGAAAGTCATCA 1717
Query 1238 GAGCGGAAGGGTTAATGGCTGCCGACGTCACTGGAAAAAGTGACCCATTTTGTGTGGTAGAACTGAACAACGAT 1311
||||.|||||.||.||||||||.||.|||||.||.||||||||.|||||||||||.||||||||||||||.|||
Sbjct 1718 GAGCAGAAGGTTTGATGGCTGCAGATGTCACAGGTAAAAGTGATCCATTTTGTGTAGTAGAACTGAACAATGAT 1791
Query 1312 AGACTGCTAACACATACTGTCTACAAAAATCTCAATCCTGAGTGGAATAAAGTCTTCACGTTCAACATTAAAGA 1385
||.|||||||||||.|||||.||||||||.|||||||||||||||||.|||||.|||||.||.|||||||||||
Sbjct 1792 AGGCTGCTAACACACACTGTGTACAAAAACCTCAATCCTGAGTGGAACAAAGTGTTCACATTTAACATTAAAGA 1865
Query 1386 TATCCATTCAGTTCTTGAAGTGACAGTTTATGATGAAGATCGGGATCGAAGTGCTGACTTTCTGGGCAAAGTTG 1459
.||.||||||||||||||||||||||||||||||||||||||.||.||.|||||.|||||||||||||.|||.|
Sbjct 1866 CATTCATTCAGTTCTTGAAGTGACAGTTTATGATGAAGATCGTGACCGGAGTGCCGACTTTCTGGGCAGAGTCG 1939
Query 1460 CTATACCATTGCTGTCTATTCAAAATGGTGAACAGAAAGCCTACGTCTTGAAAAACAAGCAGCTGACAGGGCCA 1533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1940 CTATACCATTGCTGTCTATTCAAAATGGTGAACAGAAAGCCTACGTCTTGAAAAACAAGCAGCTGACAGGGCCA 2013
Query 1534 ACAAAGGGGGTCATCTATCTTGAAATAGATGTGATTTTTAATGCTGTGAAAGCCAGCTTACGAACATTAATACC 1607
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2014 ACAAAGGGGGTCATCTATCTTGAAATAGATGTGATTTTTAATGCTGTGAAAGCCAGCTTACGAACATTAATACC 2087
Query 1608 CAAAGAACAGAAGTACATTGAAGAGGAAAACAGACTCTCTAAACAGCTGCTACTAAGAAACTTTATCAGAATGA 1681
||||||||.||||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||||..|
Sbjct 2088 CAAAGAACGGAAGTACATTGAAGAGGAAAACAGACTCTCTAAACAGCTGCTTCTAAGAAACTTTATCAGAACAA 2161
Query 1682 AACGTTGTGTCATGGTGCTGGTAAATGCTGCATACTACGTTAATAGTTGCTTTGATTGGGATTCACCCCCAAGG 1755
|||||||||||||.|||||.|||||.||||||||||||||||||||||||||||||||||||||.|||||||||
Sbjct 2162 AACGTTGTGTCATAGTGCTTGTAAACGCTGCATACTACGTTAATAGTTGCTTTGATTGGGATTCGCCCCCAAGG 2235
Query 1756 AGTCTCGCTGCTTTTGTG----------GCCTTGTATGGGACTTT--------CAT------------------ 1793
|||||.|||||||||||| .|.||||.|||.||||| |||
Sbjct 2236 AGTCTTGCTGCTTTTGTGCTCTTTCTCCTCATTGTCTGGAACTTTGAGCTCTACATGATACCACTGCTGCTGTT 2309
Query 1794 -----TAATGTC-------------------------------------------------------------- 1800
||.||.|
Sbjct 2310 GTTACTATTGACATGGAACTACTTCCTGATAATATCCGGGAAAGACAACAGGCAACGGGACACAGTAGTGGAGG 2383
Query 1801 -------------------------------------------------------------------------- 1800
Sbjct 2384 ACATGCTGGAGGACGAAGAGGAAGAAGATGACAGAGATGACAAGGATGGTGAAAAGAAAGGATTTATAAATAAA 2457
Query 1801 -------------------------------------------------------------------------- 1800
Sbjct 2458 ATCTATGCGATCCAGGAAGTCTGTGTCAGTGTGCAGAACATCCTAGATGAAGTGGCTTCCCTTGGTGAAAGGAT 2531
Query 1801 -------------------------------------------------------------------------- 1800
Sbjct 2532 AAAGAATACTTTCAACTGGACTGTCCCCTTCTTAAGCTGGCTGGCCATTGTAGCCCTGTGTGTGTTCACCGCCA 2605
Query 1801 -------------------------------------------------------------------------- 1800
Sbjct 2606 TTCTGTACTTCATCCCACTGAGATACATTGTTCTTGTTTGGGGAATTAATAAATTTACAAAAAAGCTTCGGAGT 2679
Query 1801 -------------------------------------------------------------------------- 1800
Sbjct 2680 CCATATGCAATTGATAACAATGAACTACTTGACTTCCTTTCCAGAGTTCCTTCAGATGTACAAGTGGTGCAGTA 2753
Query 1801 ------------------------------------------------------------- 1800
Sbjct 2754 CCAAGAACTGAAACCAGATCATTCTCATAGCCCATACAAAAGGAAGAAAAACAACCTTGGC 2814
