Nucleotide Global Alignment
Description
- Query:
- TRCN0000475853
- Subject:
- XM_017315642.1
- Aligned Length:
- 3021
- Identities:
- 1473
- Gaps:
- 1389
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ATGGAGCCCCGGGCTGCCACGACTGGCGAGCTCGTGCGGGCCGCGTCCCCCTCCTTCCAGGCCCGGCTCTGGAA 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GAACCTGCAGCTGGGGGTGGGCAAGGGCAAGGGCGGCGGAGGCGGGCGCGCTGGGGGCCCCGAGCACCGCACTG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CGGCCACTCCGACCCCGTCCCCGCCGCCCCCGGGGACCACGCAGGACGCCCTGGCCGGTGTGGGAAGTACTGGC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 AGCAGGTGGAGCGGCTTCAAGAAGCGGAAGCAAGTGCTGGACCGAGTGTTCTCCTCCTCACAGCCCAACCTGTG 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 CTGCTCCTCACCAGAGCCCCTGGAGCCAGGCGGAGCAGGCAGAGCCGAGCAAGGGTCCACGCTGCGCCGCCGCC 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 TACGCGAACATCTGCTGCCCGTGGCTAAGGGGTCCTCGACAGCCACAGGGACAGGCGGAGTGACGCCTCCTGGC 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 GGACGCTCTCCGGACTCAGCTCCTTCTTCGTCTTCCGCCTCATCTTCCCTGTCCTCTTCTCCCCAACCGCCCCC 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 GAGGGGGGACCGCGTCCGTGATGAGAGTACACGGCGTGGGGGCCCTGGGGTGCACCTGTGCCACCAAAAGAGCT 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 CCTCTCTGCCCGGAACCGCGTGCCTGGAGCAGTTGCTGGAACCGGCGCCACCCCCCGCAGAACCGGCCCGGGGT 666
Query 1 -------------ATGCTAGACAGCTGC--AAGCTGA-AAAGTGC----CTGCAATTTGCCATTTATTTGTAAT 54
|.||| |||| ||| || |.||.|| ||||| |||
Sbjct 667 CCCGCCGAACCCCAGGCT------CTGCAGAAG--GACATAGAGCGCGACTGCA----GCC------------- 715
Query 55 AAGAAAATAA-TAAACACTGCTGGAACCAGTAATGCAGAAGTCCCCTTGGCTGATCCCGGAATGTACCAGCTGG 127
||||||||| | ||.|.|||||.||||||||||||.|||||.||||||||||||||||||||||||.|||
Sbjct 716 -AGAAAATAAGT----ACAGTTGGAAACAGTAATGCAGATGTCCCTTTGGCTGATCCCGGAATGTACCAGTTGG 784
Query 128 ACATTACATTAAGAAGGGGTCAAAGTTTAGCTGCTCGAGATCGAGGAGGGACGAGTGATCCATATGTGAAGTTT 201
|.||.|||.|||||||||||||||||||||||||.||.||||||||||||||.||.|||||.||||||||||||
Sbjct 785 ATATCACACTAAGAAGGGGTCAAAGTTTAGCTGCCCGTGATCGAGGAGGGACAAGCGATCCGTATGTGAAGTTT 858
Query 202 AAAATCGGAGGAAAAGAAGTTTTTAGAAGTAAGATAATACACAAGAACCTCAACCCTGTGTGGGAAGAAAAAGC 275
|||||.|||.|||||||||||||||||||.||.||.||.|||||||||||.||.|||||||||||.|||||.||
Sbjct 859 AAAATTGGAAGAAAAGAAGTTTTTAGAAGCAAAATTATCCACAAGAACCTAAATCCTGTGTGGGAGGAAAAGGC 932
Query 276 TTGTATTCTGGTTGATCATCTTAGGGAGCCATTGTATATAAAGGTATTTGACTATGATTTTGGACTACAGGATG 349
|||..|.||..||||.||||||||.||||||.|.|||||.||||||||||||||||||||||||||.||.||||
Sbjct 933 TTGCGTGCTCATTGACCATCTTAGAGAGCCACTATATATCAAGGTATTTGACTATGATTTTGGACTGCAAGATG 1006
Query 350 ACTTTATGGGCTCAGCCTTTCTGGATCTGACACAATTGGAGTTAAACAGGCCCACAGATGTGACCCTTACTCTG 423
||||||||||||||||||||||.|||||.||.||.|||||||||||||||.||||||||||.|||||.||||||
Sbjct 1007 ACTTTATGGGCTCAGCCTTTCTTGATCTCACTCAGTTGGAGTTAAACAGGTCCACAGATGTTACCCTAACTCTG 1080
Query 424 AAAGATCCTCATTATCCTGACCATGATCTTGGAATCATTTTGCTCTCAGTCATCCTTACCCCTAAAGAAGGAGA 497
|||||.||.|||||||||||||||||.|||||||||||||||||.||||||||||||||.|||||.|||||.||
Sbjct 1081 AAAGACCCCCATTATCCTGACCATGACCTTGGAATCATTTTGCTGTCAGTCATCCTTACGCCTAAGGAAGGTGA 1154
Query 498 GTCCAGGGATGTGACAATGCTAATGAGGAAGAGTTGGAAAAGATCAAGTAAGGAACTTTCAGAAAATGAAGTGG 571
...||||||||||||||||||||||||||||||||||||||||||.||||||
Sbjct 1155 ACACAGGGATGTGACAATGCTAATGAGGAAGAGTTGGAAAAGATCCAGTAAG---------------------- 1206
Query 572 TTGGATCTTATTTCTCTGTGAAGTCTCTCTTTTGGAGGACGTGCGGCAGGCCAGCTCTTCCTGTCCTGGGCTTC 645
Sbjct 1207 -------------------------------------------------------------------------- 1206
Query 646 TGCAGAGCAGAGCTTCAGAATCCTTATTGCAAAAATGTACAATTTCAGACCCAAAGTTTACGCCTATCAGACCT 719
|||||||||||||||||||||||.||.||||.
Sbjct 1207 ------------------------------------------TTTCAGACCCAAAGTTTACGCCTGTCCGACCA 1238
Query 720 ACACAGAAAATCGCATCTTTGGAGAGGAATAGTCAGCATCACCTTGATTGAAGGGAGAGACCTCAAGGCCATGG 793
.|||||.|||||.||.|||||||||||||||||||||||||||||||||||.||..||||.|||||.||.||||
Sbjct 1239 GCACAGGAAATCACACCTTTGGAGAGGAATAGTCAGCATCACCTTGATTGAGGGTCGAGATCTCAAAGCAATGG 1312
Query 794 ATTCCAACGGGTTGAGCGATCCCTACGTGAAGTTCCGGCTTGGGCATCAGAAGTACAAGAGCAAGATTATGCCA 867
|||||||.||||||||.|||||.||.|||||||||||||||||.|||||||||||||||||||||||||||||.
Sbjct 1313 ATTCCAATGGGTTGAGTGATCCATATGTGAAGTTCCGGCTTGGCCATCAGAAGTACAAGAGCAAGATTATGCCC 1386
Query 868 AAAACGTTGAATCCTCAGTGGAGGGAACAATTTGATTTTCACCTTTATGAAGAAAGAGGAGGAGTCATTGATAT 941
|||||.|||||.||||||||||||||.|||||||||||.||.||.||||||||||||||.||..||||.||.||
Sbjct 1387 AAAACTTTGAACCCTCAGTGGAGGGAGCAATTTGATTTCCATCTCTATGAAGAAAGAGGTGGGATCATGGACAT 1460
Query 942 CACTGCATGGGACAAAGATGCTGGGAAAAGGGATGATTTCATTGGCAGGTGCCAGGTCGACCTGTCAGCCCTCA 1015
||||||.|||||||||||||||||||||||.|||||.||.|||||.|||||||||||.||||||||..||||||
Sbjct 1461 CACTGCCTGGGACAAAGATGCTGGGAAAAGAGATGACTTTATTGGAAGGTGCCAGGTTGACCTGTCTTCCCTCA 1534
Query 1016 GTAGGGAACAGACGCACAAGCTGGAGTTGCAGCTGGAAGAGGGTGAGGGACACCTGGTGCTGCTGGTCACTCTG 1089
|||||||.||.||.||||||||||||||.||.|||||||||||||||||.||||||||.|||||.|||||||||
Sbjct 1535 GTAGGGAGCAAACTCACAAGCTGGAGTTACATCTGGAAGAGGGTGAGGGCCACCTGGTTCTGCTTGTCACTCTG 1608
Query 1090 ACAGCATCAGCCACAGTCAGCATCTCTGACCTGTCTGTCAACTCCCTGGAGGACCAGAAGGAACGAGAGGAGAT 1163
|||||.||.|||||||||.|.|||||||||||.||||||||.|||.||||||||||||||||.||.||.|||||
Sbjct 1609 ACAGCCTCGGCCACAGTCTGTATCTCTGACCTCTCTGTCAATTCCATGGAGGACCAGAAGGAGCGGGAAGAGAT 1682
Query 1164 ATTAAAGAAATATAGCCCATTGAGGATATTTCACAACCTGAAAGATGTGGGATTTCTCCAGGTGAAAGTCATCA 1237
||||||||.||||||||||.|||||||||||.|||||||.|||||.||||||||||||||||||||||||||||
Sbjct 1683 ATTAAAGAGATATAGCCCACTGAGGATATTTAACAACCTAAAAGACGTGGGATTTCTCCAGGTGAAAGTCATCA 1756
Query 1238 GAGCGGAAGGGTTAATGGCTGCCGACGTCACTGGAAAAAGTGACCCATTTTGTGTGGTAGAACTGAACAACGAT 1311
||||.|||||.||.||||||||.||.|||||.||.||||||||.|||||||||||.||||||||||||||.|||
Sbjct 1757 GAGCAGAAGGTTTGATGGCTGCAGATGTCACAGGTAAAAGTGATCCATTTTGTGTAGTAGAACTGAACAATGAT 1830
Query 1312 AGACTGCTAACACATACTGTCTACAAAAATCTCAATCCTGAGTGGAATAAAGTCTTCACGTTCAACATTAAAGA 1385
||.|||||||||||.|||||.||||||||.|||||||||||||||||.|||||.|||||.||.|||||||||||
Sbjct 1831 AGGCTGCTAACACACACTGTGTACAAAAACCTCAATCCTGAGTGGAACAAAGTGTTCACATTTAACATTAAAGA 1904
Query 1386 TATCCATTCAGTTCTTGAAGTGACAGTTTATGATGAAGATCGGGATCGAAGTGCTGACTTTCTGGGCAAAGTTG 1459
.||.||||||||||||||||||||||||||||||||||||||.||.||.|||||.|||||||||||||.|||.|
Sbjct 1905 CATTCATTCAGTTCTTGAAGTGACAGTTTATGATGAAGATCGTGACCGGAGTGCCGACTTTCTGGGCAGAGTCG 1978
Query 1460 CTATACCATTGCTGTCTATTCAAAATGGTGAACAGAAAGCCTACGTCTTGAAAAACAAGCAGCTGACAGGGCCA 1533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1979 CTATACCATTGCTGTCTATTCAAAATGGTGAACAGAAAGCCTACGTCTTGAAAAACAAGCAGCTGACAGGGCCA 2052
Query 1534 ACAAAGGGGGTCATCTATCTTGAAATAGATGTGATTTTTAATGCTGTGAAAGCCAGCTTACGAACATTAATACC 1607
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2053 ACAAAGGGGGTCATCTATCTTGAAATAGATGTGATTTTTAATGCTGTGAAAGCCAGCTTACGAACATTAATACC 2126
Query 1608 CAAAGAACAGAAGTACATTGAAGAGGAAAACAGACTCTCTAAACAGCTGCTACTAAGAAACTTTATCAGAATGA 1681
||||||||.||||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||||..|
Sbjct 2127 CAAAGAACGGAAGTACATTGAAGAGGAAAACAGACTCTCTAAACAGCTGCTTCTAAGAAACTTTATCAGAACAA 2200
Query 1682 AACGTTGTGTCATGGTGCTGGTAAATGCTGCATACTACGTTAATAGTTGCTTTGATTGGGATTCACCCCCAAGG 1755
|||||||||||||.|||||.|||||.||||||||||||||||||||||||||||||||||||||.|||||||||
Sbjct 2201 AACGTTGTGTCATAGTGCTTGTAAACGCTGCATACTACGTTAATAGTTGCTTTGATTGGGATTCGCCCCCAAGG 2274
Query 1756 AGTCTCGCTGCTTTTGTG----------GCCTTGTATGGGACTTT--------CAT------------------ 1793
|||||.|||||||||||| .|.||||.|||.||||| |||
Sbjct 2275 AGTCTTGCTGCTTTTGTGCTCTTTCTCCTCATTGTCTGGAACTTTGAGCTCTACATGATACCACTGCTGCTGTT 2348
Query 1794 -----TAATGTC-------------------------------------------------------------- 1800
||.||.|
Sbjct 2349 GTTACTATTGACATGGAACTACTTCCTGATAATATCCGGGAAAGACAACAGGCAACGGGACACAGTAGTGGAGG 2422
Query 1801 -------------------------------------------------------------------------- 1800
Sbjct 2423 ACATGCTGGAGGACGAAGAGGAAGAAGATGACAGAGATGACAAGGATGGTGAAAAGAAAGGATTTATAAATAAA 2496
Query 1801 -------------------------------------------------------------------------- 1800
Sbjct 2497 ATCTATGCGATCCAGGAAGTCTGTGTCAGTGTGCAGAACATCCTAGATGAAGTGGCTTCCCTTGGTGAAAGGAT 2570
Query 1801 -------------------------------------------------------------------------- 1800
Sbjct 2571 AAAGAATACTTTCAACTGGACTGTCCCCTTCTTAAGCTGGCTGGCCATTGTAGCCCTGTGTGTGTTCACCGCCA 2644
Query 1801 -------------------------------------------------------------------------- 1800
Sbjct 2645 TTCTGTACTTCATCCCACTGAGATACATTGTTCTTGTTTGGGGAATTAATAAATTTACAAAAAAGCTTCGGAGT 2718
Query 1801 -------------------------------------------------------------------------- 1800
Sbjct 2719 CCATATGCAATTGATAACAATGAACTACTTGACTTCCTTTCCAGAGTTCCTTCAGATGTACAAGTGGTGCAGTA 2792
Query 1801 ------------------------------------------------------------- 1800
Sbjct 2793 CCAAGAACTGAAACCAGATCATTCTCATAGCCCATACAAAAGGAAGAAAAACAACCTTGGC 2853
