Nucleotide Global Alignment

Description

Query:
TRCN0000475853
Subject:
XM_017315642.1
Aligned Length:
3021
Identities:
1473
Gaps:
1389

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ATGGAGCCCCGGGCTGCCACGACTGGCGAGCTCGTGCGGGCCGCGTCCCCCTCCTTCCAGGCCCGGCTCTGGAA  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  GAACCTGCAGCTGGGGGTGGGCAAGGGCAAGGGCGGCGGAGGCGGGCGCGCTGGGGGCCCCGAGCACCGCACTG  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  CGGCCACTCCGACCCCGTCCCCGCCGCCCCCGGGGACCACGCAGGACGCCCTGGCCGGTGTGGGAAGTACTGGC  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  AGCAGGTGGAGCGGCTTCAAGAAGCGGAAGCAAGTGCTGGACCGAGTGTTCTCCTCCTCACAGCCCAACCTGTG  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  CTGCTCCTCACCAGAGCCCCTGGAGCCAGGCGGAGCAGGCAGAGCCGAGCAAGGGTCCACGCTGCGCCGCCGCC  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  TACGCGAACATCTGCTGCCCGTGGCTAAGGGGTCCTCGACAGCCACAGGGACAGGCGGAGTGACGCCTCCTGGC  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  GGACGCTCTCCGGACTCAGCTCCTTCTTCGTCTTCCGCCTCATCTTCCCTGTCCTCTTCTCCCCAACCGCCCCC  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  GAGGGGGGACCGCGTCCGTGATGAGAGTACACGGCGTGGGGGCCCTGGGGTGCACCTGTGCCACCAAAAGAGCT  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  CCTCTCTGCCCGGAACCGCGTGCCTGGAGCAGTTGCTGGAACCGGCGCCACCCCCCGCAGAACCGGCCCGGGGT  666

Query    1  -------------ATGCTAGACAGCTGC--AAGCTGA-AAAGTGC----CTGCAATTTGCCATTTATTTGTAAT  54
                         |.|||      ||||  |||  || |.||.||    |||||    |||             
Sbjct  667  CCCGCCGAACCCCAGGCT------CTGCAGAAG--GACATAGAGCGCGACTGCA----GCC-------------  715

Query   55  AAGAAAATAA-TAAACACTGCTGGAACCAGTAATGCAGAAGTCCCCTTGGCTGATCCCGGAATGTACCAGCTGG  127
             ||||||||| |    ||.|.|||||.||||||||||||.|||||.||||||||||||||||||||||||.|||
Sbjct  716  -AGAAAATAAGT----ACAGTTGGAAACAGTAATGCAGATGTCCCTTTGGCTGATCCCGGAATGTACCAGTTGG  784

Query  128  ACATTACATTAAGAAGGGGTCAAAGTTTAGCTGCTCGAGATCGAGGAGGGACGAGTGATCCATATGTGAAGTTT  201
            |.||.|||.|||||||||||||||||||||||||.||.||||||||||||||.||.|||||.||||||||||||
Sbjct  785  ATATCACACTAAGAAGGGGTCAAAGTTTAGCTGCCCGTGATCGAGGAGGGACAAGCGATCCGTATGTGAAGTTT  858

Query  202  AAAATCGGAGGAAAAGAAGTTTTTAGAAGTAAGATAATACACAAGAACCTCAACCCTGTGTGGGAAGAAAAAGC  275
            |||||.|||.|||||||||||||||||||.||.||.||.|||||||||||.||.|||||||||||.|||||.||
Sbjct  859  AAAATTGGAAGAAAAGAAGTTTTTAGAAGCAAAATTATCCACAAGAACCTAAATCCTGTGTGGGAGGAAAAGGC  932

Query  276  TTGTATTCTGGTTGATCATCTTAGGGAGCCATTGTATATAAAGGTATTTGACTATGATTTTGGACTACAGGATG  349
            |||..|.||..||||.||||||||.||||||.|.|||||.||||||||||||||||||||||||||.||.||||
Sbjct  933  TTGCGTGCTCATTGACCATCTTAGAGAGCCACTATATATCAAGGTATTTGACTATGATTTTGGACTGCAAGATG  1006

Query  350  ACTTTATGGGCTCAGCCTTTCTGGATCTGACACAATTGGAGTTAAACAGGCCCACAGATGTGACCCTTACTCTG  423
            ||||||||||||||||||||||.|||||.||.||.|||||||||||||||.||||||||||.|||||.||||||
Sbjct 1007  ACTTTATGGGCTCAGCCTTTCTTGATCTCACTCAGTTGGAGTTAAACAGGTCCACAGATGTTACCCTAACTCTG  1080

Query  424  AAAGATCCTCATTATCCTGACCATGATCTTGGAATCATTTTGCTCTCAGTCATCCTTACCCCTAAAGAAGGAGA  497
            |||||.||.|||||||||||||||||.|||||||||||||||||.||||||||||||||.|||||.|||||.||
Sbjct 1081  AAAGACCCCCATTATCCTGACCATGACCTTGGAATCATTTTGCTGTCAGTCATCCTTACGCCTAAGGAAGGTGA  1154

Query  498  GTCCAGGGATGTGACAATGCTAATGAGGAAGAGTTGGAAAAGATCAAGTAAGGAACTTTCAGAAAATGAAGTGG  571
            ...||||||||||||||||||||||||||||||||||||||||||.||||||                      
Sbjct 1155  ACACAGGGATGTGACAATGCTAATGAGGAAGAGTTGGAAAAGATCCAGTAAG----------------------  1206

Query  572  TTGGATCTTATTTCTCTGTGAAGTCTCTCTTTTGGAGGACGTGCGGCAGGCCAGCTCTTCCTGTCCTGGGCTTC  645
                                                                                      
Sbjct 1207  --------------------------------------------------------------------------  1206

Query  646  TGCAGAGCAGAGCTTCAGAATCCTTATTGCAAAAATGTACAATTTCAGACCCAAAGTTTACGCCTATCAGACCT  719
                                                      |||||||||||||||||||||||.||.||||.
Sbjct 1207  ------------------------------------------TTTCAGACCCAAAGTTTACGCCTGTCCGACCA  1238

Query  720  ACACAGAAAATCGCATCTTTGGAGAGGAATAGTCAGCATCACCTTGATTGAAGGGAGAGACCTCAAGGCCATGG  793
            .|||||.|||||.||.|||||||||||||||||||||||||||||||||||.||..||||.|||||.||.||||
Sbjct 1239  GCACAGGAAATCACACCTTTGGAGAGGAATAGTCAGCATCACCTTGATTGAGGGTCGAGATCTCAAAGCAATGG  1312

Query  794  ATTCCAACGGGTTGAGCGATCCCTACGTGAAGTTCCGGCTTGGGCATCAGAAGTACAAGAGCAAGATTATGCCA  867
            |||||||.||||||||.|||||.||.|||||||||||||||||.|||||||||||||||||||||||||||||.
Sbjct 1313  ATTCCAATGGGTTGAGTGATCCATATGTGAAGTTCCGGCTTGGCCATCAGAAGTACAAGAGCAAGATTATGCCC  1386

Query  868  AAAACGTTGAATCCTCAGTGGAGGGAACAATTTGATTTTCACCTTTATGAAGAAAGAGGAGGAGTCATTGATAT  941
            |||||.|||||.||||||||||||||.|||||||||||.||.||.||||||||||||||.||..||||.||.||
Sbjct 1387  AAAACTTTGAACCCTCAGTGGAGGGAGCAATTTGATTTCCATCTCTATGAAGAAAGAGGTGGGATCATGGACAT  1460

Query  942  CACTGCATGGGACAAAGATGCTGGGAAAAGGGATGATTTCATTGGCAGGTGCCAGGTCGACCTGTCAGCCCTCA  1015
            ||||||.|||||||||||||||||||||||.|||||.||.|||||.|||||||||||.||||||||..||||||
Sbjct 1461  CACTGCCTGGGACAAAGATGCTGGGAAAAGAGATGACTTTATTGGAAGGTGCCAGGTTGACCTGTCTTCCCTCA  1534

Query 1016  GTAGGGAACAGACGCACAAGCTGGAGTTGCAGCTGGAAGAGGGTGAGGGACACCTGGTGCTGCTGGTCACTCTG  1089
            |||||||.||.||.||||||||||||||.||.|||||||||||||||||.||||||||.|||||.|||||||||
Sbjct 1535  GTAGGGAGCAAACTCACAAGCTGGAGTTACATCTGGAAGAGGGTGAGGGCCACCTGGTTCTGCTTGTCACTCTG  1608

Query 1090  ACAGCATCAGCCACAGTCAGCATCTCTGACCTGTCTGTCAACTCCCTGGAGGACCAGAAGGAACGAGAGGAGAT  1163
            |||||.||.|||||||||.|.|||||||||||.||||||||.|||.||||||||||||||||.||.||.|||||
Sbjct 1609  ACAGCCTCGGCCACAGTCTGTATCTCTGACCTCTCTGTCAATTCCATGGAGGACCAGAAGGAGCGGGAAGAGAT  1682

Query 1164  ATTAAAGAAATATAGCCCATTGAGGATATTTCACAACCTGAAAGATGTGGGATTTCTCCAGGTGAAAGTCATCA  1237
            ||||||||.||||||||||.|||||||||||.|||||||.|||||.||||||||||||||||||||||||||||
Sbjct 1683  ATTAAAGAGATATAGCCCACTGAGGATATTTAACAACCTAAAAGACGTGGGATTTCTCCAGGTGAAAGTCATCA  1756

Query 1238  GAGCGGAAGGGTTAATGGCTGCCGACGTCACTGGAAAAAGTGACCCATTTTGTGTGGTAGAACTGAACAACGAT  1311
            ||||.|||||.||.||||||||.||.|||||.||.||||||||.|||||||||||.||||||||||||||.|||
Sbjct 1757  GAGCAGAAGGTTTGATGGCTGCAGATGTCACAGGTAAAAGTGATCCATTTTGTGTAGTAGAACTGAACAATGAT  1830

Query 1312  AGACTGCTAACACATACTGTCTACAAAAATCTCAATCCTGAGTGGAATAAAGTCTTCACGTTCAACATTAAAGA  1385
            ||.|||||||||||.|||||.||||||||.|||||||||||||||||.|||||.|||||.||.|||||||||||
Sbjct 1831  AGGCTGCTAACACACACTGTGTACAAAAACCTCAATCCTGAGTGGAACAAAGTGTTCACATTTAACATTAAAGA  1904

Query 1386  TATCCATTCAGTTCTTGAAGTGACAGTTTATGATGAAGATCGGGATCGAAGTGCTGACTTTCTGGGCAAAGTTG  1459
            .||.||||||||||||||||||||||||||||||||||||||.||.||.|||||.|||||||||||||.|||.|
Sbjct 1905  CATTCATTCAGTTCTTGAAGTGACAGTTTATGATGAAGATCGTGACCGGAGTGCCGACTTTCTGGGCAGAGTCG  1978

Query 1460  CTATACCATTGCTGTCTATTCAAAATGGTGAACAGAAAGCCTACGTCTTGAAAAACAAGCAGCTGACAGGGCCA  1533
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1979  CTATACCATTGCTGTCTATTCAAAATGGTGAACAGAAAGCCTACGTCTTGAAAAACAAGCAGCTGACAGGGCCA  2052

Query 1534  ACAAAGGGGGTCATCTATCTTGAAATAGATGTGATTTTTAATGCTGTGAAAGCCAGCTTACGAACATTAATACC  1607
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2053  ACAAAGGGGGTCATCTATCTTGAAATAGATGTGATTTTTAATGCTGTGAAAGCCAGCTTACGAACATTAATACC  2126

Query 1608  CAAAGAACAGAAGTACATTGAAGAGGAAAACAGACTCTCTAAACAGCTGCTACTAAGAAACTTTATCAGAATGA  1681
            ||||||||.||||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||||..|
Sbjct 2127  CAAAGAACGGAAGTACATTGAAGAGGAAAACAGACTCTCTAAACAGCTGCTTCTAAGAAACTTTATCAGAACAA  2200

Query 1682  AACGTTGTGTCATGGTGCTGGTAAATGCTGCATACTACGTTAATAGTTGCTTTGATTGGGATTCACCCCCAAGG  1755
            |||||||||||||.|||||.|||||.||||||||||||||||||||||||||||||||||||||.|||||||||
Sbjct 2201  AACGTTGTGTCATAGTGCTTGTAAACGCTGCATACTACGTTAATAGTTGCTTTGATTGGGATTCGCCCCCAAGG  2274

Query 1756  AGTCTCGCTGCTTTTGTG----------GCCTTGTATGGGACTTT--------CAT------------------  1793
            |||||.||||||||||||          .|.||||.|||.|||||        |||                  
Sbjct 2275  AGTCTTGCTGCTTTTGTGCTCTTTCTCCTCATTGTCTGGAACTTTGAGCTCTACATGATACCACTGCTGCTGTT  2348

Query 1794  -----TAATGTC--------------------------------------------------------------  1800
                 ||.||.|                                                              
Sbjct 2349  GTTACTATTGACATGGAACTACTTCCTGATAATATCCGGGAAAGACAACAGGCAACGGGACACAGTAGTGGAGG  2422

Query 1801  --------------------------------------------------------------------------  1800
                                                                                      
Sbjct 2423  ACATGCTGGAGGACGAAGAGGAAGAAGATGACAGAGATGACAAGGATGGTGAAAAGAAAGGATTTATAAATAAA  2496

Query 1801  --------------------------------------------------------------------------  1800
                                                                                      
Sbjct 2497  ATCTATGCGATCCAGGAAGTCTGTGTCAGTGTGCAGAACATCCTAGATGAAGTGGCTTCCCTTGGTGAAAGGAT  2570

Query 1801  --------------------------------------------------------------------------  1800
                                                                                      
Sbjct 2571  AAAGAATACTTTCAACTGGACTGTCCCCTTCTTAAGCTGGCTGGCCATTGTAGCCCTGTGTGTGTTCACCGCCA  2644

Query 1801  --------------------------------------------------------------------------  1800
                                                                                      
Sbjct 2645  TTCTGTACTTCATCCCACTGAGATACATTGTTCTTGTTTGGGGAATTAATAAATTTACAAAAAAGCTTCGGAGT  2718

Query 1801  --------------------------------------------------------------------------  1800
                                                                                      
Sbjct 2719  CCATATGCAATTGATAACAATGAACTACTTGACTTCCTTTCCAGAGTTCCTTCAGATGTACAAGTGGTGCAGTA  2792

Query 1801  -------------------------------------------------------------  1800
                                                                         
Sbjct 2793  CCAAGAACTGAAACCAGATCATTCTCATAGCCCATACAAAAGGAAGAAAAACAACCTTGGC  2853

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.