Nucleotide Global Alignment
Description
- Query:
- TRCN0000475906
- Subject:
- XR_003954880.1
- Aligned Length:
- 2170
- Identities:
- 878
- Gaps:
- 1171
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 AGCCACGCTCTGCCTCCCGTCGTCCGCCGTTCCCCCCCACCTCCCCCACGAGCGCCCTGTCGCGCCCCTGCGCG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CCCGCCCGGGGACCCACTTGGCGGGCGCGCGCGGGGGCGGGGCCGGCGCGGGGGCGCGCGCGTGAGGCCGCGGG 148
Query 1 ---------ATGGCGACTGATACGTCTCAAGGTGAACTCGTCCATCCT-AAGGCAC-------TCCCACTTATA 57
..||||.|.|| .||| ||| |.||..||| .||| || ||.| .|
Sbjct 149 CAGGGGGGCGGGGCGGCAGA----GCTC--GGT------GCCCGGCCTGGAGG-ACAGCGGTGTCGC-----GA 204
Query 58 GTAGGAGCTCAGCTGATCC---------------------------ACGCGGAC-----AAGTTAGGTGAGGTA 99
||.||.|.|| |.||.||| ||||||.| |..|.||...|.|.|
Sbjct 205 GTCGGCGATC-GGTGGTCCGCGGCAACGCCGAGAGGCCGTACGGGAACGCGGGCGCCGGAGCTCAGAGAAAGCA 277
Query 100 GAAGATAGCACCATGCCGATTCGTCGAACTGTGAATTCTACCCGGGAAACTCCTCCCAAAAGCAAGCTTGCTGA 173
|||||||.|||||||||.||.||||||.|.|||||||||||||||||||||||.|||||||||||.||||||||
Sbjct 278 GAAGATACCACCATGCCTATACGTCGAGCCGTGAATTCTACCCGGGAAACTCCACCCAAAAGCAAACTTGCTGA 351
Query 174 AGGGGAGGAAGAAAAGCCAGAACCAGACATAAGTTCAGAGGAATCTGTCTCCACTGTAGAAGAACAAGAGAATG 247
|||||||||||||||.|||||||||||...||||||||||||||||.||||.||||||||||||||.|||||||
Sbjct 352 AGGGGAGGAAGAAAAACCAGAACCAGATGGAAGTTCAGAGGAATCTATCTCTACTGTAGAAGAACAGGAGAATG 425
Query 248 AAACTCCACCTGCTACTTCGAGTGAGGCAGAGCAGCCAAAGGGGGAACCTGAGAATGAAGAGAAGGAAG----- 316
|.||||||||||||||.||.|||||||||||||||||.||||||||.|||||||.||.|||||||||||
Sbjct 426 AGACTCCACCTGCTACATCCAGTGAGGCAGAGCAGCCCAAGGGGGAGCCTGAGAGTGGAGAGAAGGAAGAGAAC 499
Query 317 -AAAATAAGTCTTCTGAGGAAACCAAAAAGGATGAGAAAGATCAGTCTAAAGAAAAGGAGAAGAAAGTGAAAAA 389
|.||.||||||.||||||||.||||||||||||||||.|||||||||||||||||||||||||||||||||||
Sbjct 500 AACAACAAGTCTGCTGAGGAACCCAAAAAGGATGAGAAGGATCAGTCTAAAGAAAAGGAGAAGAAAGTGAAAAA 573
Query 390 AACAATTCCTTCCTGGGCTACCCTTTCTGCCAGCCAGCTAGCCAGGGCCCAGAAACAAACACCGATGGCTTCTT 463
.||.||||||.|||||||.||.||.||||||||||||||||||||||||||||.||||||.||.||||||||.|
Sbjct 574 GACGATTCCTGCCTGGGCGACTCTCTCTGCCAGCCAGCTAGCCAGGGCCCAGAGACAAACCCCCATGGCTTCCT 647
Query 464 CCCCACGTCCCAAGATGGATGCAATCTTAACTGAGGCCATTAAGGCATGCTTCCAGAAGAGTGGTGCATCAGTG 537
|||||||.|||||||||||.||||||||||||||||||||||||||||||||||||||||.|||.||.||.|||
Sbjct 648 CCCCACGGCCCAAGATGGACGCAATCTTAACTGAGGCCATTAAGGCATGCTTCCAGAAGACTGGCGCCTCGGTG 721
Query 538 GTTGCTATTCGAAAATACATCATCCATAAGTATCCTTCTCTGGAGCTGGAGAGAAGGGGTTATCTCCTTAAACA 611
|||||.||||||||.||||||||.||||||||.||.|||||||..||||||||||||||.|||||.||.||.||
Sbjct 722 GTTGCGATTCGAAAGTACATCATTCATAAGTACCCGTCTCTGGGTCTGGAGAGAAGGGGCTATCTGCTCAAGCA 795
Query 612 AGCACTGAAAAGAGAATTAAATAGAGGAGTCATCAAACAGGTTAAAGGAAAAGGTGCTTCTGGAAGTTTTGTTG 685
|||.|||||.|||||.|||||.|||||||||||||.||||||.||||||||||||||.|||||.||||||||||
Sbjct 796 AGCGCTGAAGAGAGAGTTAAACAGAGGAGTCATCAGACAGGTAAAAGGAAAAGGTGCATCTGGCAGTTTTGTTG 869
Query 686 TGGTTCAGAAATCAAGAAAAACACCTCAGAAATCCAGAAACAGAAAGAATAGGAGCTCTGCAGTGGATCCAGAA 759
||||.|||||||| ||||.|||||||||||||||.|||||||||||| |.||||.||..|||||||||||
Sbjct 870 TGGTCCAGAAATC---AAAACCACCTCAGAAATCCAAAAACAGAAAGAA---GGGCTCGGCTCTGGATCCAGAA 937
Query 760 CCACAAGTAAAATTGGAGGATGTCCTCCCACTGGCCTTTACTCGCCTTTGTGAACCTAAAGAAGCTTCCTACAG 833
||||||||||||.||||.|||||.|||||..||||.||||||||.||.||||||||||||||||||||||||||
Sbjct 938 CCACAAGTAAAACTGGAAGATGTTCTCCCGTTGGCTTTTACTCGGCTCTGTGAACCTAAAGAAGCTTCCTACAG 1011
Query 834 TCTCATCAGGAAATATGTGTCTCAGTATTATCCTAAGCTTAGAGTGGACATCAGGCCTCAGCTGTTGAAGAACG 907
|||||||||||||||.||||||||||||||.||||||||.|||||||||||||||||.|||.||||||||||.|
Sbjct 1012 TCTCATCAGGAAATACGTGTCTCAGTATTACCCTAAGCTCAGAGTGGACATCAGGCCCCAGTTGTTGAAGAATG 1085
Query 908 CTCTGCAGAGAGCAGTAGAGAGGGGCCAGTTAGAACAGATAACTGGCAAAGGTGCTTCGGGGACATTCC----- 976
||||||||.|||||||||||||.||||||.|.||.||||||||||||||.|||||||||||||||||.|
Sbjct 1086 CTCTGCAGCGAGCAGTAGAGAGAGGCCAGCTCGAGCAGATAACTGGCAAGGGTGCTTCGGGGACATTTCAGCTG 1159
Query 977 -AGAAAT--GGGGTTTCGCC--------GTG---------------------------------TTGC--CCAG 1004
|||||| ||||....||| ||| |||| |||.
Sbjct 1160 AAGAAATCAGGGGAGAAGCCCCTGCTGGGTGGAAGCCTGATGGAATATGCAATCTTGTCTGCCATTGCTGCCAT 1233
Query 1005 G-------------------------CTACTCTTGAA-------CTCCTGGGTTCAG----------------- 1029
| ||.||| |||| .|||||| ||
Sbjct 1234 GAACGAGCCTAAGACCTGCTCCACCACTGCTC-TGAAGAAGTATGTCCTGG----AGAACCACCCAGGGGCCAA 1302
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 1303 CTCTAACTATCAGATGCATTTGCTGAAAAAAACCCTGCAGAAATGTGAGAAGAACGGGTGGCTGGAGCAGATCT 1376
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 1377 CTGGGAAGGGGTTCAGCGGCACCTTCCAGCTGTCCTTCCCCTACTACCCTAGCCCAGGAGTTCTATTTCCGAAG 1450
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 1451 AAAGAATCCGGTGGCTCTGACGATGAAGATGAAGATGACGATGACGATGAATCATCAGAAGACTCTGAGGATGA 1524
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 1525 GGAACCACCACCCAAGAGGAGGTGTGATCTGAGGAAGCTACTGAGACGGATGATAAATCTCTCAGAGCTGAAAA 1598
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 1599 TGGAGTTGGGCTTGTAATTCCAGATATTAAGGAGGAGACTGAAGCAGAGCTGGAAGTTGATGGCCAGTGGGGGC 1672
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 1673 AGCTTATTGAAACACCATCTCAAAAAGTAAAACAAGGCCTGGGGACATAGCTTACAGAAGAAAACACCAGCCAA 1746
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 1747 GTCCCAAGGGAAGACAGCCTCCATGAAGCAGAGAGGGTCGAAGCCTGCGCGGAAAGTCCCGGCTGCCCAGAGAG 1820
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 1821 GGAAAGTGAGGCCGCTGCCTAAGAAAGCTCCACCCAAGGCCAAGACCCCTGCCAGGAAAGCCAGACCCTCTCCC 1894
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 1895 TCAGTCATCAAGAAGCCTAGTGGGAGCTCCTCCAGAAAGCCCATAGCCAGTGCACGAAAGGAAGCGAAACTGCC 1968
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 1969 CGGGAAGGGCAAATCTGCCATGAAGAAGTCTTTCAAGACAAAAAAGTAAATTTTATAGGGAAAAGGGTATCATG 2042
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 2043 ATTGAATTCAGAATCTTACTTTATAAGGTCAGTGTGCATTTGTTCTAGTTATAATGCTTTTAAATTGTACTTTT 2116
Query 1030 ------------------------ 1029
Sbjct 2117 TCTTCCCATGTGAGCATTGTGGGA 2140
