Construct: ORF TRCN0000475906

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF016394.1_s317c1
Derived from:
ccsbBroadEn_11931
DNA Barcode:
TGTTAGCCCTAACAGGCATTAGTT
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
HP1BP3 (50809)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000475906
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 50809 HP1BP3 heterochromatin protein 1 b... NM_001372052.1 61% 59.5% (many diffs)
2 human 50809 HP1BP3 heterochromatin protein 1 b... NM_016287.5 61% 59.5% (many diffs)
3 human 50809 HP1BP3 heterochromatin protein 1 b... XM_005245876.3 61% 59.5% (many diffs)
4 human 50809 HP1BP3 heterochromatin protein 1 b... XM_005245877.5 61% 59.5% (many diffs)
5 human 50809 HP1BP3 heterochromatin protein 1 b... XM_005245878.5 61% 59.5% (many diffs)
6 human 50809 HP1BP3 heterochromatin protein 1 b... XM_017001393.1 61% 59.5% (many diffs)
7 human 50809 HP1BP3 heterochromatin protein 1 b... XM_005245879.4 54.5% 52.9% (many diffs)
8 human 50809 HP1BP3 heterochromatin protein 1 b... XM_011541532.1 54.5% 52.9% (many diffs)
9 human 50809 HP1BP3 heterochromatin protein 1 b... XM_011541533.1 54.5% 52.9% (many diffs)
10 human 50809 HP1BP3 heterochromatin protein 1 b... XM_011541534.2 54.5% 52.9% (many diffs)
11 human 50809 HP1BP3 heterochromatin protein 1 b... XM_017001394.1 54.5% 52.9% (many diffs)
12 human 50809 HP1BP3 heterochromatin protein 1 b... XM_024447376.1 33.9% 32.3% (many diffs)
13 human 50809 HP1BP3 heterochromatin protein 1 b... XM_024447377.1 33.9% 32.3% (many diffs)
14 human 50809 HP1BP3 heterochromatin protein 1 b... XR_001737207.1 24.3% (many diffs)
15 human 50809 HP1BP3 heterochromatin protein 1 b... XR_001737206.2 21.9% (many diffs)
16 mouse 15441 Hp1bp3 heterochromatin protein 1, ... NM_001122897.2 54.8% 55.1% (many diffs)
17 mouse 15441 Hp1bp3 heterochromatin protein 1, ... NM_001285478.1 54.8% 55.1% (many diffs)
18 mouse 15441 Hp1bp3 heterochromatin protein 1, ... NM_010470.3 54.8% 55.1% (many diffs)
19 mouse 15441 Hp1bp3 heterochromatin protein 1, ... XM_006538568.4 54.8% 55.1% (many diffs)
20 mouse 15441 Hp1bp3 heterochromatin protein 1, ... NM_001285479.1 54.6% 55.1% (many diffs)
21 mouse 15441 Hp1bp3 heterochromatin protein 1, ... NM_001285481.1 52.7% 53.1% (many diffs)
22 mouse 15441 Hp1bp3 heterochromatin protein 1, ... XM_030253218.1 52.7% 53.1% (many diffs)
23 mouse 15441 Hp1bp3 heterochromatin protein 1, ... XM_030253219.1 52.6% 53.1% (many diffs)
24 mouse 15441 Hp1bp3 heterochromatin protein 1, ... XM_006538565.4 50.2% 48.1% (many diffs)
25 mouse 15441 Hp1bp3 heterochromatin protein 1, ... XM_006538566.4 50% 48.1% (many diffs)
26 mouse 15441 Hp1bp3 heterochromatin protein 1, ... NM_001122896.2 48.6% 49.2% (many diffs)
27 mouse 15441 Hp1bp3 heterochromatin protein 1, ... NM_001356432.1 48.6% 49.2% (many diffs)
28 mouse 15441 Hp1bp3 heterochromatin protein 1, ... XM_006538570.3 48.6% 49.2% (many diffs)
29 mouse 15441 Hp1bp3 heterochromatin protein 1, ... XM_030253220.1 48.6% 49.2% (many diffs)
30 mouse 15441 Hp1bp3 heterochromatin protein 1, ... XM_030253221.1 48.6% 49.2% (many diffs)
31 mouse 15441 Hp1bp3 heterochromatin protein 1, ... XM_030253222.1 48.6% 49.2% (many diffs)
32 mouse 15441 Hp1bp3 heterochromatin protein 1, ... XM_030253223.1 48.4% 49.2% (many diffs)
33 mouse 15441 Hp1bp3 heterochromatin protein 1, ... XM_006538567.4 48.3% 46.2% (many diffs)
34 mouse 15441 Hp1bp3 heterochromatin protein 1, ... XM_030253217.1 48.1% 46.2% (many diffs)
35 mouse 15441 Hp1bp3 heterochromatin protein 1, ... NM_001285480.1 46.5% 47.3% (many diffs)
36 mouse 15441 Hp1bp3 heterochromatin protein 1, ... NM_001356431.1 46.4% 47.3% (many diffs)
37 mouse 15441 Hp1bp3 heterochromatin protein 1, ... XR_003954880.1 40.4% (many diffs)
38 mouse 15441 Hp1bp3 heterochromatin protein 1, ... XR_001784094.2 25.5% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1098
ORF length:
1029
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcaccat ggcgactgat acgtctcaag gtgaactcgt ccatcctaag gcactcccac
121ttatagtagg agctcagctg atccacgcgg acaagttagg tgaggtagaa gatagcacca
181tgccgattcg tcgaactgtg aattctaccc gggaaactcc tcccaaaagc aagcttgctg
241aaggggagga agaaaagcca gaaccagaca taagttcaga ggaatctgtc tccactgtag
301aagaacaaga gaatgaaact ccacctgcta cttcgagtga ggcagagcag ccaaaggggg
361aacctgagaa tgaagagaag gaagaaaata agtcttctga ggaaaccaaa aaggatgaga
421aagatcagtc taaagaaaag gagaagaaag tgaaaaaaac aattccttcc tgggctaccc
481tttctgccag ccagctagcc agggcccaga aacaaacacc gatggcttct tccccacgtc
541ccaagatgga tgcaatctta actgaggcca ttaaggcatg cttccagaag agtggtgcat
601cagtggttgc tattcgaaaa tacatcatcc ataagtatcc ttctctggag ctggagagaa
661ggggttatct ccttaaacaa gcactgaaaa gagaattaaa tagaggagtc atcaaacagg
721ttaaaggaaa aggtgcttct ggaagttttg ttgtggttca gaaatcaaga aaaacaccTC
781AGAAATCCAG AAACAGAAAG AATAGGAGCT CTGCAGTGGA TCCAGAACCA CAAGTAAAAT
841TGGAGGATGT CCTCCCACTG GCCTTTACTC GCCTTTGTGA ACCTAAAGAA GCTTCCTACA
901GTCTCATCAG GAAATATGTG TCTCAGTATT ATCCTAAGCT TAGAGTGGAC ATCAGGCCTC
961AGCTGTTGAA GAACGCTCTG CAGAGAGCAG TAGAGAGGGG CCAGTTAGAA CAGATAACTG
1021GCAAAGGTGC TTCGGGGACA TTCCAGAAAT GGGGTTTCGC CGTGTTGCCC AGGCTACTCT
1081TGAACTCCTG GGTTCAGTTG CCAACTTTCT TGTACAAAGT GGTTGATATC GGTAAGCCTA
1141TCCCTAACCC TCTCCTCGGT CTCGATTCTA CGTAGTAATG AACTAGTCCG TAACTTGAAA
1201GTATTTCGAT TTCTTGGCTT TATATATCTT GTGGAAAGGA CGATGTTAGC CCTAACAGGC
1261ATTAGTTACG CGTTAAGTCg acaatcaacc tctggattac aaaatttgtg aaagatt

Download FASTA (ORF) (Full)