Nucleotide Global Alignment
Description
- Query:
- TRCN0000476193
- Subject:
- XM_006540664.1
- Aligned Length:
- 4066
- Identities:
- 2120
- Gaps:
- 1598
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ATGGGGCTGGAGGCCCAGAGGCTGCCTGGGGCTGAGGAGGCCCCCGTGAGGGTGGCCCTTCGAGTTCGCCCATT 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GCTGCCCAAGGAGCTGCTGCATGGTCATCAGAGTTGCCTGCGTGTGGAGCCTGAGCGGGGTCGAATCACCCTGG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GGCGGGACCGACACTTTGGGTTCCATGTGGTCCTGGGAGAGGACACTGGGCAAGAGGCTGTGTACCAGGCTTGC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GTGCAGCCCCTCCTCGAGGCTTTCTTTGAGGGCTTCAATGCCACCGTCTTTGCCTATGGTCAGACAGGCTCTGG 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 GAAGACATATACCATGGGGGAGGCCAGTGTGGCCTCCCTGCATGAAGATGAACAAGGTATCATCCCAAGGGCCA 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 TGGCTGAGGCCTTCAAGCTCATTGATGAGAATGACCTGCTGGACTGCCTGGTGCATGTATCCTACCTGGAACTC 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 TACAAGGAAGAGTTCCGAGATCTGCTAGAAGTTGGCACTGCCAGCCGGGACATCCAGCTTCGGGAAGATGATCG 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 GGGAAATGTTGTGCTCTGTGGGGTGAAAGAAGTGGATGTAGAAGGCCTGGACGAGGTGCTGAGCCTCCTAGAGA 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 TGGGCAATGCTGCGCGCCACACAGGCGCCACACACTTCAACCGCCTCTCCAGCCGCTCACACACAGTCTTCACT 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 GTGACCCTGGAGCAGCGGGGACGGACTCCTAGCCGCTTGCCTCGACCCGCCGCTGGCCACCTGCTGGTCTCCAA 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 ATTCCACTTCGTGGACCTGGCAGGCTCCGAGAGGGTTCTGAAGACCGGCAGCACCGGAGAACGGCTCAAAGAGA 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 GCATCCAGATTAACAGCACCCTGCTGGCGCTGGGAAATGTCATTAGCGCCCTGGGGGACCCCCAGCGCCGAGGC 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 AGCCACATCCCTTACCGTGATTCCAAGATCACCCGGATCCTCAAAGACTCTCTGGGAGGGAATGCCAAGACAGT 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 GATGATCGCCTGCGTCAGCCCCTCCTCCTCCGACTTCGATGAGACCCTCAACACCCTAAACTACGCCAGCCGTG 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 CTCAGAACATCCGCAATCGCGCCACAGTCAACTGGCGTCCAGAGGCCGAGCGCGTCCCTGAGGAACAGGCGGCG 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 GGTGCGCGCGGGCCGCCGCGACACCGCTCGGAAACGCGCATCATCCATCGCGGCCGGCGCGTGCCCTGCCCTGC 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 AGTGGGCTCCGCGGCAGTCGCTGCGGGCCTGGGGGCCGAGTGCGCGCGCTGCCGGGCCCGCACCAGCGCCGCCT 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 ACAGCCTCCTGCGAGAGCTTCAGGCCGAGCCCGGGCTGCCTGGCGCTGCCGCCCGCAAAGTGCGGGACTGGCTG 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 TGCGCGGTGGAGGGCGAGCGCAGCACCTTGAGCTCTGCCTCCGGACCCGACAGCGGCATCGAAAGCGCTCCAGC 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 CGAGGACCAGGCGGCACAGGGGACCAGCGGGAGAAAGGGAGATGAGGGGACCCAGCAGCTGTTGACCCTGCAGA 1480
Query 1 -----------------------------------------------------------ATGGAGCAGTACAAA 15
|||||||||||||||
Sbjct 1481 GCCAGGTGGCCCGGCTAGAGGAGGAGAATCGAGATTTCCTGGCGGCTTTGGAGGACGCCATGGAGCAGTACAAA 1554
Query 16 CTGCAGAGCGACCGGCTGCGTGAGCAGCAGGAGGAGATGGTGGAACTGCGGCTGCGGTTAGAGCTGGTGCGGCC 89
||||||||.|||||.|||||.|||||||||||.||||||||.|||||||||||.||..|||||||||..|.|||
Sbjct 1555 CTGCAGAGTGACCGCCTGCGGGAGCAGCAGGAAGAGATGGTAGAACTGCGGCTACGCCTAGAGCTGGCACAGCC 1628
Query 90 AGGCTGGGGGGGCCCGCGGCTCCTGAATGGCCTGCCTCCCGGGTCCTTTGTGCCTCGACCTCATACAGCCCCCC 163
.||||||||.|..|||.||||||||.|.|||.||||.||.||.|||||||||||.||.|||||.||||||||||
Sbjct 1629 TGGCTGGGGTGCACCGGGGCTCCTGCAGGGCTTGCCACCGGGATCCTTTGTGCCCCGGCCTCACACAGCCCCCC 1702
Query 164 TGGGGGGTGCCCACGCCCATGTGCTGGGCATGGTGCCGCCTGCCTGCCTCCCTGGAGATGAAGTTGGCTCTGAG 237
||||||||||||||.|.||..|||||||||||.||||..|..|.||.||.||||||||.||||||.||||||||
Sbjct 1703 TGGGGGGTGCCCACACTCACATGCTGGGCATGATGCCCTCGACATGTCTTCCTGGAGAAGAAGTTAGCTCTGAG 1776
Query 238 CAGAGGGGAGAGCAGGTGACAAATGGCAGGGAGGCTGGAGCTGAGTTGCTGACTGAGGTGAACAGGCTGGGAAG 311
| ||||||||...|.|||||.|||.|....|||.|||.||.||.|..|||.|.|||...||.|.||
Sbjct 1777 C---------AGCAGGTGGTGAGTGGCAAGGAAGTCAAAGCAGAGGTGTTGGCCCAGGCGGACAAATTGAGGAG 1841
Query 312 TGGCTCTTCAGCTGCTTCAGAGGAGGAAGAGGAGGAG------------------------GAGGAGCCGCCCA 361
||.||||||..||.|.|||||||||||||.||||||| ||||||||.||||
Sbjct 1842 TGCCTCTTCCACTACATCAGAGGAGGAAGGGGAGGAGGAGGAGGAAGAGGAGGAAGAAGAAGAGGAGCCACCCA 1915
Query 362 GGCGGACCTTACACCTGCGCAGAAATAGGATCAGCAACTGCAGTCAGAGGGCGGGGGCACGCCCAGGGAGTCTG 435
|||||||||||.||.|||||||||||.|||||||||||||.|||||||||||.|||....|.||||||||.|..
Sbjct 1916 GGCGGACCTTATACTTGCGCAGAAATGGGATCAGCAACTGGAGTCAGAGGGCAGGGTTGAGTCCAGGGAGCCCA 1989
Query 436 CCAGAGAGGAAGGGCCCAGAGCTTTGCCTTGAGGAGTTGGATGCAGCCATTCCAGGGTCCA----GAGCAGTTG 505
||.||.|||||||||||||||.|.||||..||.|||...|.|||.|||||.|||| || .||||||.|
Sbjct 1990 CCTGACAGGAAGGGCCCAGAGGTCTGCCCAGAAGAGCCAGCTGCTGCCATCCCAG----CACCACAAGCAGTCG 2059
Query 506 GTGGGAGCAAGGCCCGAGTTCAGGCCCGCCAGGTCCCCCCTGCCACAGCCTCAGAGTGGCGGCTGGCCCAGGCC 579
||.|..||||||.||.|||||||.|||||||||.|||..||||||..|||||.||||||||.||||||||||||
Sbjct 2060 GTAGCGGCAAGGTCCCAGTTCAGACCCGCCAGGCCCCAGCTGCCATGGCCTCTGAGTGGCGACTGGCCCAGGCC 2133
Query 580 CAGCAGAAGATCCGGGAGCTGGCTATCAACATCCGCATGAAGGAGGAGCTTATTGGCGAGCTGGTCCGCACAGG 653
||.|||||.||||||||.|||||.||||||||||||||||||||||||||.|||||.|||||||||||.|||||
Sbjct 2134 CAACAGAAAATCCGGGAACTGGCCATCAACATCCGCATGAAGGAGGAGCTCATTGGTGAGCTGGTCCGGACAGG 2207
Query 654 AAAGGCAGCTCAGGCCCTGAACCGCCAGCACAGCCAGCGTATCCGGGAGCTGGAGCAGGAGGCAGAGCAGGTGC 727
.|||||.||.||||||||||||||.||.|||||||||||.|||||||||||||||||||||||.||||..||||
Sbjct 2208 GAAGGCGGCCCAGGCCCTGAACCGTCAACACAGCCAGCGCATCCGGGAGCTGGAGCAGGAGGCTGAGCGTGTGC 2281
Query 728 GGGCCGAGCTGAGTGAAGGCCAGAGGCAGCTGCGGGAGCTCGAGGGCAAGGAGCTCCAGGATGCTGGCGAGCGG 801
||||.||||||.|||||||.|||||||||||.||.|||||.|||||||.|||||.|||.|||||..|||||.||
Sbjct 2282 GGGCGGAGCTGTGTGAAGGGCAGAGGCAGCTTCGAGAGCTGGAGGGCAGGGAGCCCCAAGATGCCAGCGAGAGG 2355
Query 802 TCTCGGCTCCAGGAGTTCCGCAGGAGGGTCGCTGCGGCCCAGAGCCAGGTGCAGGTGCTGAAGGAGAAGAAGCA 875
||..||||||||||.|||||.|.|||.||.|||||.|||||.||||||||||||||||||||||||||||||||
Sbjct 2356 TCCAGGCTCCAGGAATTCCGTAAGAGAGTGGCTGCAGCCCAAAGCCAGGTGCAGGTGCTGAAGGAGAAGAAGCA 2429
Query 876 GGCTACGGAGCGGCTGGTGTCACTGTCGGCCCAGAGTGAGAAGCGACTGCAGGAGCTCGAGCGGAACGTGCAGC 949
|||.||.|||||.|||||||||||||||||.||.|||||||..||.||.||||||||.|||.||||.|||||||
Sbjct 2430 GGCAACAGAGCGACTGGTGTCACTGTCGGCTCAAAGTGAGACTCGGCTACAGGAGCTGGAGAGGAATGTGCAGC 2503
Query 950 TCATGCGGCAGCAGCAGGGACAGCTGCAGAGGCGGCTTCGCGAGGAGACGGAGCAGAAGCGGCGCCTGGAGGCA 1023
|||||||||..||||||||.|||||||||||||||||.||.||||||||.|||||||||||||||||.|||.|.
Sbjct 2504 TCATGCGGCGACAGCAGGGGCAGCTGCAGAGGCGGCTCCGTGAGGAGACAGAGCAGAAGCGGCGCCTAGAGACG 2577
Query 1024 GAAATGAGCAAGCGGCAGCACCGCGTCAAGGAGCTGGAGCTGAAGCATGAGCAACAGCAGAAGATCCTGAAGAT 1097
||.||||.||||||||||||.|||||||||||||||||.||||||||.|||||||||||.|||||||||||.||
Sbjct 2578 GAGATGAACAAGCGGCAGCATCGCGTCAAGGAGCTGGAACTGAAGCACGAGCAACAGCAAAAGATCCTGAAAAT 2651
Query 1098 TAAGACGGAAGAGATCGCGGCCTTCCAGAGGAAGAGGCGCAGTGGCAGCAACGGCTCTGTGGTCAGCCTGGAAC 1171
.|||||.||||||||.||.||||||||||||||||||||||||||||||||.|||||||||||.||||||||.|
Sbjct 2652 CAAGACAGAAGAGATTGCAGCCTTCCAGAGGAAGAGGCGCAGTGGCAGCAATGGCTCTGTGGTGAGCCTGGAGC 2725
Query 1172 AGCAGCAGAAGATTGAGGAGCAGAAGAAGTGGCTGGACCAGGAGATGGAGAAGGTGCTACAGCAGCGGCGGGCG 1245
|||||||||||||.|||||||||||||||||||||||||||||||||||.||||||||.|||||||||||||||
Sbjct 2726 AGCAGCAGAAGATCGAGGAGCAGAAGAAGTGGCTGGACCAGGAGATGGAAAAGGTGCTGCAGCAGCGGCGGGCG 2799
Query 1246 CTGGAGGAGCTGGGGGAGGAGCTCCACAAGCGGGAGGCCATCCTGGCCAAGAAGGAGGCCCTGATGCAGGAGAA 1319
|||||||||.||||.||||||||.|.|||||||||||.||||||||||||||||||||||||||||||||||||
Sbjct 2800 CTGGAGGAGTTGGGAGAGGAGCTTCGCAAGCGGGAGGTCATCCTGGCCAAGAAGGAGGCCCTGATGCAGGAGAA 2873
Query 1320 GACGGGGCTGGAGATCAAGCGCCTGAGATCCAGCCAGGCCCTCAACGAGGACATCGTGCGAGTGTCCAGCCGGC 1393
|||||||||.||||.||||||||||||.||||||||||||||.||.||.|||||.|||||.|||||||||||.|
Sbjct 2874 GACGGGGCTTGAGAGCAAGCGCCTGAGGTCCAGCCAGGCCCTAAATGAAGACATTGTGCGTGTGTCCAGCCGCC 2947
Query 1394 TGGAGCACCTGGAGAAGGAGCTGTCCGAGAAGAGCGGGCAGCTGCGGCAGGGCAGCGCCCAGAGCCAGCAGCAG 1467
|.||.|||||||||||||||||.||.||||||||.||||||||||||||.|||||||||||||.||||||||||
Sbjct 2948 TAGAACACCTGGAGAAGGAGCTATCTGAGAAGAGTGGGCAGCTGCGGCAAGGCAGCGCCCAGAACCAGCAGCAG 3021
Query 1468 ATCCGCAGGGAGATCGACAGCCTGCGCCAGGAGAAGGACTCACTGCTCAAGCAGCGCCTGGAGATCGACGGCAA 1541
|||.|..|||||||.||||.|||||||||.|||||||||||||||.|.|||||.|||||||||||.||..||||
Sbjct 3022 ATCAGAGGGGAGATAGACACCCTGCGCCAAGAGAAGGACTCACTGTTGAAGCAACGCCTGGAGATTGATAGCAA 3095
Query 1542 GCTGAGGCAGGGGAGTCTGCTGTCCCCCGAGGAGGAGCGGACGCTGTTCCAGTTGGATGAGGCCATCGAGGCCC 1615
||||||||||||.||.||||||||.||.|||||.|||.||||.|||||||||.|||||||.|||||||||||||
Sbjct 3096 GCTGAGGCAGGGAAGCCTGCTGTCACCTGAGGAAGAGAGGACACTGTTCCAGCTGGATGAAGCCATCGAGGCCC 3169
Query 1616 TGGATGCTGCCATTGAGTATAAGAATGAGGCCATCACATGCCGCCAGCGGGTGCTTCGGGCCTCAGCCTCGTTG 1689
||||.||||||||.|||||.|||||||||||.|||||||||||||||||||||||.|||||.||.|||||.|||
Sbjct 3170 TGGACGCTGCCATCGAGTACAAGAATGAGGCTATCACATGCCGCCAGCGGGTGCTACGGGCTTCGGCCTCCTTG 3243
Query 1690 CTGTCCCAGTGCGAGATGAACCTCATGGCCAAGCTCAGCTACCTCTCATCCTCAGAGACCAGAGCCCTCCTCTG 1763
|||||||||||.||||||||.||||||||.||||||||||||||.||.||||||||||||||||||||.||.||
Sbjct 3244 CTGTCCCAGTGTGAGATGAATCTCATGGCAAAGCTCAGCTACCTTTCCTCCTCAGAGACCAGAGCCCTGCTGTG 3317
Query 1764 CAAGTATTTTGACAAGGTGGTGACGCTCCGAGAGGAGCAGCACCAGCAGCAGATTGCCTTCTCGGAACTGGAGA 1837
||||||||||||||||||||||||.||||||||||||||.||||||||.|||||||||||||||||.|||||||
Sbjct 3318 CAAGTATTTTGACAAGGTGGTGACACTCCGAGAGGAGCAACACCAGCAACAGATTGCCTTCTCGGAGCTGGAGA 3391
Query 1838 TGCAGCTGGAGGAGCAGCAGAGGCTGGTGTACTGGCTGGAGGTGGCCCTGGAGCGGCAGCGCCTGGAGATGGAC 1911
||||||||||||||||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3392 TGCAGCTGGAGGAGCAGCAGCGGCTGGTGTACTGGCTGGAGGTGGCCCTGGAGCGGCAGCGCCTGGAGATGGAC 3465
Query 1912 CGCCAGCTGACCCTGCAGCAGAAGGAGCACGAGCAGAACATGCAGCTGCTCCTGCAGCAGAGTCGAGACCACCT 1985
||.|||||||||||||||||||||||||||||||||||..|.|||||||||||.||||||.|.|||||||||||
Sbjct 3466 CGGCAGCTGACCCTGCAGCAGAAGGAGCACGAGCAGAATGTACAGCTGCTCCTCCAGCAGGGCCGAGACCACCT 3539
Query 1986 CGGTGAAGGGTTAGCAGACAGCAGGAGGCAGTATGAGGCCCGGATTCAAGCTCTGGAGAAGGAACTGGGCCGTT 2059
.||.||.||||||||||||||||.||||||||||||||||||||||||.|||||||||||||||||.||.||..
Sbjct 3540 TGGCGAGGGGTTAGCAGACAGCAAGAGGCAGTATGAGGCCCGGATTCACGCTCTGGAGAAGGAACTAGGTCGAC 3613
Query 2060 ACATGTGGATAAACCAGGAACTGAAACAGAAGCTCGGCGGTGTGAA-CGCTGTAGGCCACAGCAGGGGTGGGGA 2132
|||||||||||||||||||.|||||.|||||||||.|.|..| ||| |.|||.||||||.|||.|||||.|.||
Sbjct 3614 ACATGTGGATAAACCAGGAGCTGAAGCAGAAGCTCAGTGCAG-GAAGCACTGCAGGCCAGAGCCGGGGTTGTGA 3686
Query 2133 GAAGAGGAGCCTGTGCTCGGAGGGCAGACA--GGCTCCTGGAAATGAAGATGAGCTCCACCTGGCA---CCCGA 2201
||.|||.|||||.|||..|||...|||||| |.|| ||||||||||||||.||||||.|..||| ||.||
Sbjct 3687 GAGGAGAAGCCTCTGCCTGGAAAACAGACAATGCCT--TGGAAATGAAGATGGGCTCCATCCCGCAGCTCCTGA 3758
Query 2202 GCTTCTCTGGCTGTCCCCCCTCACT-GAGGGGGCCCCCCGCACCCGGGAGGAGACGCGGGACTTGGTCCACGCT 2274
.|.||||||||.||||.|||| .|| |||||||...||||.....||||.|||.|.||||||||||||||.||.
Sbjct 3759 ACCTCTCTGGCAGTCCTCCCT-TCTGGAGGGGGTGTCCCGTGTGTGGGATGAGTCCCGGGACTTGGTCCATGCC 3831
Query 2275 CCGTTACCCTTGACCTGGAAACGCTCGAGCCTGTGTGGTGAG-GAGCAGGGGTCCCCCGAGGA-ACTGAGGCAG 2346
||..|||||.||||.|||||||||||.|||.|||| .|| ||||||||.|||.|.||||| .|| |||...
Sbjct 3832 CCACTACCCCTGACATGGAAACGCTCAAGCTTGTG----CAGCGAGCAGGGCTCCTCTGAGGAGTCT-AGGGTC 3900
Query 2347 CGGGAGGCGGCTGAGCCCCTGGTGGGGCGGGTGCTTCCTGTGGGTGAGGCAGGCCTGCCCTGGAACTTTGGGCC 2420
||||||.|..||||.||||..||.|||||||||||.|||.|||||||.|..|||||..|||||||||||||.||
Sbjct 3901 CGGGAGACAACTGAACCCCCAGTAGGGCGGGTGCTACCTATGGGTGAAGTGGGCCTCTCCTGGAACTTTGGACC 3974
Query 2421 TTTGTCCAAGCCCCGGCGGGAACTGCGACGAGCCAGCCCGGGGATGATTGATGTCCGGAAAAACCCCCTG 2490
.|||.|||||||||||.||||||..|||.||.|||||||.||||||||.||.|||.|||||||||||.||
Sbjct 3975 CTTGCCCAAGCCCCGGTGGGAACCCCGAAGAACCAGCCCAGGGATGATCGACGTCAGGAAAAACCCCTTG 4044
