Nucleotide Global Alignment
Description
- Query:
- TRCN0000476735
- Subject:
- XR_001738618.2
- Aligned Length:
- 3919
- Identities:
- 981
- Gaps:
- 2880
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 CTTAGCCCAGGGGCCGGCGCCTCCCCGCCTCGCGCGGACTGTCTCGTGCGGGCAGCTGCGGGCGCACCTGGACC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CTCGCAAGGCCCGGGCGGCGCCGATCCCCGCGGGACGCGCTGCGCTCGGGGCCTCCCGCCTCCCCCCCTGCCCC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 AGCCGCCCCCCGGCCGCGCGGCGCCCCGCACCCTGCAGGGACGGCTGCCGCATCGCTGGGACAAACTCGGCAGC 222
Query 1 -------------------------------------------------ATGGTGCCCAGCTCTCCGCGCGCGC 25
|||||||||||||||||||||||||
Sbjct 223 GGAGGCAAAGTTATTTCCCCTCCCAGGCAGCGGGATTCCGACTGGCAAGATGGTGCCCAGCTCTCCGCGCGCGC 296
Query 26 TCTTCCTTCTGCTCCTGATCCTCGCCTGCCCCGAGCCGCGGGCTTCCCAGAACTGTCTCAGCAAACAGCAGCTC 99
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 TCTTCCTTCTGCTCCTGATCCTCGCCTGCCCCGAGCCGCGGGCTTCCCAGAACTGTCTCAGCAAACAGCAGCTC 370
Query 100 CTCTCGGCCATCCGCCAGCTGCAGCAGCTGCTGAAGGGCCAGGAGACACGCTTCGCCGAGGGCATCCGCCACAT 173
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 CTCTCGGCCATCCGCCAGCTGCAGCAGCTGCTGAAGGGCCAGGAGACACGCTTCGCCGAGGGCATCCGCCACAT 444
Query 174 GAAGAGCCGGCTGGCCGCGCTGCAGAACTCTGTGGGCAGGGTGGGCCCAGATGCCCTTCCAGTTTCCTGCCCGG 247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 GAAGAGCCGGCTGGCCGCGCTGCAGAACTCTGTGGGCAGGGTGGGCCCAGATGCCCTTCCAGTTTCCTGCCCGG 518
Query 248 CTCTGAACACCCCCGCAGACGGCAGAAAGTTTGGAAGCAAGTACTTAGTGGATCACGAAGTCCATTTTACCTGC 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 CTCTGAACACCCCCGCAGACGGCAGAAAGTTTGGAAGCAAGTACTTAGTGGATCACGAAGTCCATTTTACCTGC 592
Query 322 AACCCTGGGTTCCGGCTGGTCGGGCCCAGCAGCGTGGTGTGTCTTCCCAATGGCACCTGGACAGGGGAGCAGCC 395
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 AACCCTGGGTTCCGGCTGGTCGGGCCCAGCAGCGTGGTGTGTCTTCCCAATGGCACCTGGACAGGGGAGCAGCC 666
Query 396 CCACTGTAGAGGTATCAGTGAATGCTCCAGCCAGCCTTGTCAAAATGGTGGTACATGTGTAGAAGGAGTCAACC 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 CCACTGTAGAGGTATCAGTGAATGCTCCAGCCAGCCTTGTCAAAATGGTGGTACATGTGTAGAAGGAGTCAACC 740
Query 470 AGTACAGATGCATTTGTCCTCCAGGAAGGACTGGGAACCGCTGTCAGCATCAGGCCCAGACT------------ 531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 AGTACAGATGCATTTGTCCTCCAGGAAGGACTGGGAACCGCTGTCAGCATCAGGCCCAGACTGCCGCCCCCGAG 814
Query 532 -------------------------------------------------------------------------- 531
Sbjct 815 GGCAGCGTGGCCGGCGACTCCGCCTTCAGCCGCGCGCCGCGCTGTGCGCAGGTGGAGCGGGCTCAGCACTGCAG 888
Query 532 ----------------------------------------------------GACGTGAACGAGTGTGAGCTCT 553
||||||||||||||||||||||
Sbjct 889 CTGCGAGGCCGGATTCCACCTGAGCGGCGCCGCCGGCGACAGCGTCTGCCAGGACGTGAACGAGTGTGAGCTCT 962
Query 554 ACGGGCAGGAGGGGCGCCCCCGGCTCTGCATGCACGCCTGCGTGAACACCCCGGGCTCTTACCGTTGCACCTGC 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 ACGGGCAGGAGGGGCGCCCCCGGCTCTGCATGCACGCCTGCGTGAACACCCCGGGCTCTTACCGTTGCACCTGC 1036
Query 628 CCCGGTGGATACCGAACTCTGGCTGACGGGAAGAGCTGTGAGGATGTGGATGAATGTGTGGGCCTGCAGCCGGT 701
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 CCCGGTGGATACCGAACTCTGGCTGACGGGAAGAGCTGTGAGGATGTGGATGAATGTGTGGGCCTGCAGCCGGT 1110
Query 702 GTGCCCCCAGGGGACCACATGCATCAACACCGGTGGAAGCTTCCAGTGTGTCAGCCCTGAGTGCCCCGAGGGCA 775
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 GTGCCCCCAGGGGACCACATGCATCAACACCGGTGGAAGCTTCCAGTGTGTCAGCCCTGAGTGCCCCGAGGGCA 1184
Query 776 GCGGCAATGTGAGCTACGTGAAGACGTCTCCATTCCAGTGTGAGCGGAACCCCTGCCCCATGGACAGCAGGCCC 849
||||||||||||||||||||||||||||||||||..|.| .||||.|||
Sbjct 1185 GCGGCAATGTGAGCTACGTGAAGACGTCTCCATTGTATT--------------------TTGGAGAGC------ 1232
Query 850 TGCCGCCATCTGCCCAAGACCATCTCCTTCCATTACCTCTCTCTGCCTTCCAAC-CTGAAGACGCCCATCACGC 922
|.|.||||||.| ||| |||..|| .
Sbjct 1233 ------------------------------------------CAGTCTTCCAGCTCTG-AGATTCC-------T 1256
Query 923 TCTTCCGCATGGCCACAGCCTCTGCCCCCGGCCGA----GCTGGGCCCAACAGCCTGCGGTTTGGGA-TCGTGG 991
|||||.||.||| ..|..||| ||.|| .||.| ||.||||..|.||..| ||.|
Sbjct 1257 TCTTCAGCTTGG---TTGATTCT-------GCTGATAAGACTTG-------AGACTGCACTGTGAAATTCTT-- 1311
Query 992 GTGGGAACAGCCGCGGCCACTTTGTGATGCAGCGT--TCAGACCGGCAGACTGGGGA--------------TCT 1049
|.|.|.|||..|.||||.| |||| .|||.|| ||| |||
Sbjct 1312 ----------------CTAGTGTGTTCTTCAGCTTTATCAG--TGGCGGA----GGAAGAAGAAAAATACTTCT 1363
Query 1050 GATCCTTGTGCAGAACC---TGGAGG-GGCCT--CAGAC-GCTGGAGGTG----GAC-------GTCGACATGT 1105
|| ||| |||||| |.|||| .||.| || || .||||||.|| ||| ...||.||||
Sbjct 1364 -AT--TTG---AGAACCCTATTGAGGTTGCATGCCA-ACTTCTGGAGATGTTCAGACAAGAAAAAAAGAAATGT 1430
Query 1106 CGGAA----------TACCT----------------------GGACCGCTCCTTCCAGGCCAACCACGTGTCC- 1146
.|.|| ||||| .||| .||.||.|| ||.|||
Sbjct 1431 GGTAAATTCTAATTTTACCTTTTTATGTCTATTTTATTTACATGAC--TTCTTTTCA----------GTATCCA 1492
Query 1147 -----------------AAGGTCAC-----CATCTT--TGTATCCCCCTATG---ACTTC-------------- 1179
||..|||| |||.|| ||.||.| ||| |.|||
Sbjct 1493 AAACCTAATATAAAAAAAAAATCACATAATCATTTTTATGCATTC----ATGTGTAATTCAGGTATACTGTCAT 1562
Query 1180 -------------------------------------------------------------------------- 1179
Sbjct 1563 ATTCATAACTTTCAAATGATTCCAATCAAATTCATCCTAATAATCATCTAATATTATTTACTACTACTACAGGA 1636
Query 1180 -------------------------------------------------------------------------- 1179
Sbjct 1637 ACTGAAAAACTTATTTCATATATATCACTTTTCCATATCTATTTCACACAAATAAACAACTAAATATTTGGTAC 1710
Query 1180 -------------------------------------------------------------------------- 1179
Sbjct 1711 AACTTCTAATTCCACATTAACCATTCATATTTTACAACCTAAAAATATCTATAAACAAGCACCTTTGACTTTGT 1784
Query 1180 -------------------------------------------------------------------------- 1179
Sbjct 1785 AATATTTACATATGCTCAAGGGAACATTTTGCCAGAAGATCGTATGGTTGGCTTCAAAAGAATCTTTTAAATTT 1858
Query 1180 -------------------------------------------------------------------------- 1179
Sbjct 1859 TCATGTATACTTAGATTAAATTTTTAAGAGACTAGCTCCAACTAACATGAGAAATGAAAGAATACAAATGACTG 1932
Query 1180 -------------------------------------------------------------------------- 1179
Sbjct 1933 TAACTTTTCAATAACCTTTTCTCACAGACTGAAAGAATATCTGAAGAAAACATTTTGAAATTACTACTTAACTA 2006
Query 1180 -------------------------------------------------------------------------- 1179
Sbjct 2007 TTATTTGATGTAATTCTAAAATGTTTATAAACCCGTAACTTGTAACTTTCCTTCCAAGAATCTTTATAACAGGA 2080
Query 1180 -------------------------------------------------------------------------- 1179
Sbjct 2081 GTACTATTTTTCTTATTTGATTTGCTTTGTTTAGCTTAGCTTAGCTATTAAAATGGCTAATTATACTGAAGATT 2154
Query 1180 -------------------------------------------------------------------------- 1179
Sbjct 2155 TTACATCTTTCCAACTTAAATCAGCAATGAATATACATCTTCCTTTCAGCTACAAGGAAACATATACAAATGAA 2228
Query 1180 -------------------------------------------------------------------------- 1179
Sbjct 2229 AAATATTTAAACTGAATTCTTAAGTTATTAGTCCTAATATATCCCATATGCTAACCTAAGAGGCACTCTCCTTA 2302
Query 1180 -------------------------------------------------------------------------- 1179
Sbjct 2303 ATTATCTTCAAATTCTCATCCTTAGTTCAAACATATTCCTTAAAAAAGAAAAAACAAAAGATTATTAAAAATTA 2376
Query 1180 -------------------------------------------------------------------------- 1179
Sbjct 2377 TACTTACTTTAGCCAACAATTCTTGTGTTTCAGGAGTCAGTGGAGCATGAGAAAACTTGCAGTATTCTCCCTGA 2450
Query 1180 -------------------------------------------------------------------------- 1179
Sbjct 2451 TAACATTTTGTTCCTGTATGGTAAAACTTACAAGGATATTCATGTAACCCAAGTGTTAAGGAAGAGAACAATTT 2524
Query 1180 -------------------------------------------------------------------------- 1179
Sbjct 2525 TAATCCAATTGAAATAATGTTATTAACTTAATGACTTTATTTTTCCTAAATAAAGACCTCTGTGGCCGGGCGAG 2598
Query 1180 -------------------------------------------------------------------------- 1179
Sbjct 2599 GTGGCTCATGCCTGTAGGAGGCGGAGGTGGGCAGATCACTTGAGGCCAGGAGTTCAAGACCAACCTAGCCAACA 2672
Query 1180 -------------------------------------------------------------------------- 1179
Sbjct 2673 TGGCGAAACCTCGCCTTTACTAAAAATCCAAAAAAATTAGCTGGGCATGGTGGCGCAGGCATGCCTGTAATCCC 2746
Query 1180 -------------------------------------------------------------------------- 1179
Sbjct 2747 AGCTACTCAGGAGGCTGAGGCACCAAAATCATTTGAACCTGGGAGGCGGAGGTTGCAGCGAACCAAGATTGTCC 2820
Query 1180 -------------------------------------------------------------------------- 1179
Sbjct 2821 ACTGCACTCCAGCCTGGGCAACAGAGCAAGATAATGTCTCAAAAAAAAAAAAAAAAAAAAGACCTTTCCTACTA 2894
Query 1180 -------------------------------------------------------------------------- 1179
Sbjct 2895 GCAGAAACTGGATTTCTCTATTTAAAGTATGAGATAATAAACTAACTGGAATACATTTAAAAATCTAATTTTAG 2968
Query 1180 -------------------------------------------------------------------------- 1179
Sbjct 2969 AAGGACTACATACGTAAATCAAGTTTCTTGGCTATGACAGGACATTTTTTTCCTTCATATCCATTCTTATAATA 3042
Query 1180 -------------------------------------------------------------------------- 1179
Sbjct 3043 GAGTACAGGCATGTTTCATATATGAAAGGGGTATATATTTTAAATACCTTGATAAATGTGATCATTTTTAAAGC 3116
Query 1180 -------------------------------------------------------------------------- 1179
Sbjct 3117 ATTCCTTTGGGGGTGGAGGAATCAAAGTCAACAACGACATATCTTACAAATCTGGATCCTTTGTACATTAGACT 3190
Query 1180 -------------------------------------------------------------------------- 1179
Sbjct 3191 TGTTTACAACAGAATAAATTTATATAACTTCAATATTTTCTAGGAAAACAATCCTCAAATTACAATTTGATACT 3264
Query 1180 -------------------------------------------------------------------------- 1179
Sbjct 3265 CCTTATATTGAATGCCTGAAGAAAAAAATTTTTTTGTGATGACTAAAGGTGCTATTAACCTAAAATGTTTATGT 3338
Query 1180 -------------------------------------------------------------------------- 1179
Sbjct 3339 TCCATGTTTTTACAACTTGTCTGTGCCATTTGCACTGAAGAGCTAAGGCTATTCTGCAAATTAAGGGATGATTA 3412
Query 1180 -------------------------------------------------------------------------- 1179
Sbjct 3413 ATTTCTACACAGTACAGAATACACAGAAAACAGGTACTCCCAAATTATGTAATCCTTGCCTTTTTATGAAGTAG 3486
Query 1180 -------------------------------------------------------------------------- 1179
Sbjct 3487 CTTATTTGAATATAGATTCAATTAATCAGTGTCACAGTAGAAATTGTGATAAGTCTTTCTGGGATTTGAAGAGG 3560
Query 1180 -------------------------------------------------------------------------- 1179
Sbjct 3561 TCTCATGGACCCTCTATACCACCCAGGTTGAGCAGAAAGAATCATCATTTGAGAGATTTTCTAAAGAATCCCTC 3634
Query 1180 -------------------------------------------------------------------------- 1179
Sbjct 3635 TTTTCTTGCTTATGAAAAAATCCACGTACAATTTAATCACTTTGATACTAAGTTGGGCTTGGATAATATCATTT 3708
Query 1180 ----------------------------------------------------------------------- 1179
Sbjct 3709 TGGTATACCTAAAACACTGGTTTCATTAAAAATTTTGCACATTTAAAATGTTCATGTAAATATTTATAAAG 3779
