Nucleotide Global Alignment
Description
- Query:
- TRCN0000476847
- Subject:
- NR_110280.3
- Aligned Length:
- 5139
- Identities:
- 813
- Gaps:
- 4301
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 AGTTGCTGTGGAAGCCCCATAGGCAGGAGGCCCCCGGGCAGCACATCCTGTCTGCTTGTGTCTGCTGCAGAGTT 74
Query 1 -----------------------------------------------------ATGTCTCCCCACCCCACCGCC 21
|||||||||||||||||||||
Sbjct 75 CTGTCCTTGCATTGGTGCGCCTCAGGCCAGGCTGCACTGCTGGGACCTGGGCCATGTCTCCCCACCCCACCGCC 148
Query 22 CTCCTGGGCCT--------------------------------------------------------------- 32
|||||||||||
Sbjct 149 CTCCTGGGCCTAGCAAGAAGGATTACATGGAGACAGTGATGTCGAGGAGGGTTGGCTTGGTCGTTATGAAATGC 222
Query 33 -------------------------------------------------------------------------- 32
Sbjct 223 TGAATGCCCCCCAGCTCCATCGAGCCCCCTTTTGACAGCAGCCCCGTAAGGAGACTGGGCACTGGGCATTTTTC 296
Query 33 -------------------AGTGCTCTGCCTGGCCCAGACCATCCACACGCAGGAGGAAGATCTGCCCAGACCC 87
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 TCACTGGGGCTTCTCTTCCAGTGCTCTGCCTGGCCCAGACCATCCACACGCAGGAGGAAGATCTGCCCAGACCC 370
Query 88 TCCATCTCGGCTGAGCCAGGCACCGTGATCCCCCTGGGGAGCCATGTGACTTTCGTGTGCCGGGGCCCGGTTGG 161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 TCCATCTCGGCTGAGCCAGGCACCGTGATCCCCCTGGGGAGCCATGTGACTTTCGTGTGCCGGGGCCCGGTTGG 444
Query 162 GGTTCAAACATTCCGCCTGGAGAGGGAGAGTAGATCCACATACAATGATACTGAAGATGTGTCTCAAGCTAGTC 235
|||||||||||||||||||||||||||.||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 GGTTCAAACATTCCGCCTGGAGAGGGACAGTAGATCCACATACAATGATACTGAAGATGTGTCTCAAGCTAGTC 518
Query 236 CATCTGAGTCAGAGGCCAGATTCCGCATTGACTCAGTAAG---TGAAGGAAATGCCGGGCCTTATCG----CTG 302
||||||||||||||||||||||||||||||||||| .||| ||.|| |||.||.||...|| |.|
Sbjct 519 CATCTGAGTCAGAGGCCAGATTCCGCATTGACTCA-AAAGCTCTGGAG-----GCCCGGACTCCCCGGACACAG 586
Query 303 CATCTATTATAAGCCC----CCT-AAATGGTCTG-AGCAG--------------AGTGACTAC--------CT- 347
||||| ||| |..|||||.| ||||| .|.||.||| ||
Sbjct 587 -----------AGCCCGGCTCCTCAGCTGGTCAGTAGCAGGGCCCTCAGCTGGAGGGGATTACAGGGGAATCTG 649
Query 348 ------GGA-GCTG---------------------CTGG---TGAAAGAAACCTCT--GGAGGCC--------- 379
||| |||| |||| ||.|...||..||| |||||||
Sbjct 650 TGCTGCGGATGCTGTTCCGGGTCCAGCCCTCTGCCCTGGGCTTGGAGTCAAGGTCTAGGGAGGCCACGGGAAGG 723
Query 380 --CGGACTCCC----------CGGA-------------CACAGAGCCC---GGCTCCTCAGC--TGGACCCACG 423
|.|||.||| .||| |||||||.|| | |||| ||||||||||
Sbjct 724 CACCGACACCCACCAAGCTCTGGGAGGTCGCTAATGCTCACAGAGACCATAG------CAGCAATGGACCCACG 791
Query 424 CAGAGGCCGTCGGACAACAGTCACAATGAGCATGCACCTGCTTCCCAAGGCCTGAAAGCTGAGCATCTGTATAT 497
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 792 CAGAGGCCGTCGGACAACAGTCACAATGAGCATGCACCTGCTTCCCAAGGCCTGAAAGCTGAGCATCTGTATAT 865
Query 498 TCTCATCGGGGTCTCAGTGGTCTTCCTCTTCTGTCTCCTCCTCCTGGTCCTCTTCTGCCTCCATCGCCAGAATC 571
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 866 TCTCATCGGGGTCTCAGTGGTCTTCCTCTTCTGTCTCCTCCTCCTGGTCCTCTTCTGCCTCCATCGCCAGAATC 939
Query 572 AGATAAAGCAGGGGCCCCCCAGAAGCAAGGACGAGGAGCAGAAGCCACAGCAGAGGCCTGACCTGGCTGTTGAT 645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 940 AGATAAAGCAGGGGCCCCCCAGAAGCAAGGACGAGGAGCAGAAGCCACAGCAGAGGCCTGACCTGGCTGTTGAT 1013
Query 646 GTTCTAGAGAGGACAGCAGACAAGGCCACAGTCAATGGACTTCCTGAGAAGGACAGAGAGACGGACACCTCGGC 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1014 GTTCTAGAGAGGACAGCAGACAAGGCCACAGTCAATGGACTTCCTGAGAAGGACAGAGAGACGGACACCTCGGC 1087
Query 720 CCTGGCTGCAGGGAGTTCCCAGGAGGTGACGTATGCTCAGCTGGACCACTGGGCCCTCACACAGAGGACAGCCC 793
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1088 CCTGGCTGCAGGGAGTTCCCAGGAGGTGACGTATGCTCAGCTGGACCACTGGGCCCTCACACAGAGGACAGCCC 1161
Query 794 GGGCTGTGTCCCCACAGTCCACAAAGCCCATGGCCGAGTCCATCACGTATGCAGCCGTTGCCAGACAC------ 861
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1162 GGGCTGTGTCCCCACAGTCCACAAAGCCCATGGCCGAGTCCATCACGTATGCAGCCGTTGCCAGACACTGACCC 1235
Query 862 -------------------------------------------------------------------------- 861
Sbjct 1236 CATACCCACCTGGCCTCTGCACCTGAGGGTAGAAAGTCACTCTAGGAAAAGCCTGAAGCAGCCATTTGGAAGGC 1309
Query 862 -------------------------------------------------------------------------- 861
Sbjct 1310 TTCCTGTTGGATTCCTCTTCATCTAGAAAGCCAGCCAGGCAGCTGTCCTGGAGACAAGAGCTGGAGACTGGAGG 1383
Query 862 -------------------------------------------------------------------------- 861
Sbjct 1384 TTTCTAACCAGCATCCAGAAGGTTCGTTAGCCAGGTGGTCCCTTCTACAATCGAGCAGCTCCTTGGACAGACTG 1457
Query 862 -------------------------------------------------------------------------- 861
Sbjct 1458 TTTCTCAGTTATTTCCAGAGACCCAGCTACAGTTCCCTGGCTGTTTCTAGAGACCCAGCTTTATTCACCTGACT 1531
Query 862 -------------------------------------------------------------------------- 861
Sbjct 1532 GTTTCCAGAGACCCAGCTAAAGTCACCTGCCTGTTCTAAAGGCCCAGCTACAGCCAATCAGCCGATTTCCTGAG 1605
Query 862 -------------------------------------------------------------------------- 861
Sbjct 1606 CAGTGATGCCACCTCCAAGCTTGTCCTAGGTGTCTGCTGTGAACCTCCAGTGACCCCAGAGACTTTGCTGTAAT 1679
Query 862 -------------------------------------------------------------------------- 861
Sbjct 1680 TATCTGCCCTGCTGACCCTAAAGACCTTCCTAGAAGTCAAGAGCTAGCCTTGAGACTGTGCTATACACACACAG 1753
Query 862 -------------------------------------------------------------------------- 861
Sbjct 1754 CTGAGAGCCAAGCCCAGTTCTCTGGGTTGTGCTTTACTCCACGCATCAATAAATAATTTTGAAGGCCTCACATC 1827
Query 862 -------------------------------------------------------------------------- 861
Sbjct 1828 TGGCAGCCCCAGGCCTGGTCCTGGGTGCATAGGTCTCTCGGACCCACTCTCTGCCTTCACAGTTGTTCAAAGCT 1901
Query 862 -------------------------------------------------------------------------- 861
Sbjct 1902 GAGTGAGGGAAACAGGACTTACGAAAACGTGTCAGCGTTTTCTTTTTAAAATTTAATTGATCAGGATTGTACGT 1975
Query 862 -------------------------------------------------------------------------- 861
Sbjct 1976 ATTCAAGGTGTAAAATGTGATAATTTGTCGTACACGTACATTGTGCAATGACAGTCACAATCAATTCCTCAGCG 2049
Query 862 -------------------------------------------------------------------------- 861
Sbjct 2050 CACCCATCGCCACAGATACGATACATTAGATATTCTGAACTTGCTCATCTTAGGACTTCACATTGGTGTCAGTG 2123
Query 862 -------------------------------------------------------------------------- 861
Sbjct 2124 TTTTCTGACAAATCACGTGTATCAGGAATGAATGAGGGAGGTGTGGCTGGGTGAAGGCAGAGAGCCGACCCTAC 2197
Query 862 -------------------------------------------------------------------------- 861
Sbjct 2198 AGGTCCACATCTGCACATACATGCACAGGAATGCATGCTCTCACACACATGCATACACACACGCACACACACAG 2271
Query 862 -------------------------------------------------------------------------- 861
Sbjct 2272 ACATGCACATACACTCACACGCCCCAGGAAATCCAAGGAATCACTGAGCCTGCTGTTGGTTGAGGCATTTCTGA 2345
Query 862 -------------------------------------------------------------------------- 861
Sbjct 2346 GTATCCACCCTACCTGTAGGGTCAGATGTACTGATTGACACAGAAAATTACCCTATGTACCACTAGGAGGCGGC 2419
Query 862 -------------------------------------------------------------------------- 861
Sbjct 2420 AGAATCTCATTTGGGTTAATCTGTGTTTGTCTTTAAAAAACAAAAACAGGCCGGGCATGGAGGCTCACGCCTGT 2493
Query 862 -------------------------------------------------------------------------- 861
Sbjct 2494 AATCCCAGCACTTTGGGAGGCTGAGGTGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG 2567
Query 862 -------------------------------------------------------------------------- 861
Sbjct 2568 TGAAACCCCATCTCTACTAAAAATACAAAAAAATTAGCCGGGTGTGGTGGTGGGTGCCTGTAGTCCCAGCTACT 2641
Query 862 -------------------------------------------------------------------------- 861
Sbjct 2642 CGGGAGGCTGAGGGAGGAGAATGGCGTGAACCCGGGAGGCGGAGTTTGCAGTGAGCCGAGGTGGTGCCACTGCA 2715
Query 862 -------------------------------------------------------------------------- 861
Sbjct 2716 CTCCAGCCTGGGCGACAGAGCGAGACTCCGTCAAAAAAGAAAAGAAAAGAAAAGAAAGATTTTTAAGAATTCAG 2789
Query 862 -------------------------------------------------------------------------- 861
Sbjct 2790 CAAAAACTCAGCCAGCTCTTTCTATGGGGCAGTTGCTAATTTAGTTCTAGGCAAACGTGGACACATTAAATTCT 2863
Query 862 -------------------------------------------------------------------------- 861
Sbjct 2864 CCTACAAACCCTCCACAGCGTGCTCTATTATTTTCCTCATTTATAAAAACAGAAACTATGGACCGAGACATGAA 2937
Query 862 -------------------------------------------------------------------------- 861
Sbjct 2938 GTAACCTGTCCAAGGTCGGCCAAGTCTCAGAGACAGGGGCTTCAGACCCACCTGAGGCTCCTGACTCCACATTA 3011
Query 862 -------------------------------------------------------------------------- 861
Sbjct 3012 TGAACCCCGGGATGGGCTGCAGCTCGGTCTGCTGGGAGGTTTCTGTGCTGGTTCAAAGAGGGTGGTACCTGACT 3085
Query 862 -------------------------------------------------------------------------- 861
Sbjct 3086 GGCCTACCCAATTTTAATTTGTACTGAGCTTTAATTTTCTATTTGTGCTCAGGTTTAATTTCCTCCTGGGATCT 3159
Query 862 -------------------------------------------------------------------------- 861
Sbjct 3160 GCTTCCCAGTGCTGTACTCTGTATCTTTGCTTTCTTGTGTGAACATTGTGACCGATTTTCCCTGTTCTTCACGT 3233
Query 862 -------------------------------------------------------------------------- 861
Sbjct 3234 GGGACACATTCTCCCTGCTCTGTCTGTCTCTGTCCCTGTCTCTCTTTCTGTCTTTCTCTCTCACTGTGTGTCTC 3307
Query 862 -------------------------------------------------------------------------- 861
Sbjct 3308 TCTGTCTCTCTCTCTCTTTTTTTTTTTTTTTGAGATGGAGTTTCGCTCTTGTTGCCCAGGCTGGAGTGCAATGG 3381
Query 862 -------------------------------------------------------------------------- 861
Sbjct 3382 CACAATCTTGGCTCACTGCAACCTCTGCCTCCCGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCTGAGCAGCTG 3455
Query 862 -------------------------------------------------------------------------- 861
Sbjct 3456 GGATTACAGGCATGCACCACCACACACGGCTAATTTTTTGTATTTTTGTTAGAGACGGGGGGCTCTCCATGTTG 3529
Query 862 -------------------------------------------------------------------------- 861
Sbjct 3530 CTCAGGCTGGTCTTGAACTCCCGACCTCAGGTGATCTGCCCACCTCAGCCTCCCAAAGTCCTGGGATTACAGGC 3603
Query 862 -------------------------------------------------------------------------- 861
Sbjct 3604 ATGAGCCACTGCGTCCAGCCGTCTTTGTCTCTTTTTCTACATCTCTGTCTTTCTTCTCTGGTTGTTTTTCAACC 3677
Query 862 -------------------------------------------------------------------------- 861
Sbjct 3678 ATCAGCTGGGTGTTTTCTCCCATAACGTCTTGTTTGTTTGACTATGAGGTTGACAGGTGGGTACATGAACTCTA 3751
Query 862 -------------------------------------------------------------------------- 861
Sbjct 3752 TAGCAGAAGGTGGACAGTCTGCACATAGCAGAGGATGGGTGAATTTTTCTACCCCTTGCAGAGCACAGGAGAGC 3825
Query 862 -------------------------------------------------------------------------- 861
Sbjct 3826 TGAGCAGATGCCAGTGTCTGCTCCAGTGTAAGGAAGTCCAGGAAGTTCAGGTGGTGAGGTCACAGTGGAAAGCA 3899
Query 862 -------------------------------------------------------------------------- 861
Sbjct 3900 GGACAGATAGAGTTTAGGGGAAATTAAGCAAAAATACCACACTGTTATTTCTTGACATATTAGTGGAAAGAGGA 3973
Query 862 -------------------------------------------------------------------------- 861
Sbjct 3974 AGGGCCCAGAGAGAAGACAGAAAATTAGATGCAGGGGCTTGTTTTTTCTCTTGACTTGCCAACCCGCCCAACGC 4047
Query 862 -------------------------------------------------------------------------- 861
Sbjct 4048 AGGGGCCAGAACTCAGGGTGGTGAGATCTGGGAACATTGCTGTGCGGAGAAGATGTCCCTCCTGCTGCACGGGC 4121
Query 862 -------------------------------------------------------------------------- 861
Sbjct 4122 CCCCAAGCACCACCTGGGGGAAGAGCCATGTTTAATTCACCTGGCAGTGCAGTGTGGCCAGGCAGAGAGGGAGG 4195
Query 862 -------------------------------------------------------------------------- 861
Sbjct 4196 GCCTACCCTGTGCTTATGATCCCACCCCAGTTCCCCTGGGGTGTGCCCTGGCGGTGAACACCAGGAGGCTGCAG 4269
Query 862 -------------------------------------------------------------------------- 861
Sbjct 4270 TGGGGCCCAACGTGAAAGGGAGGAGCAGCCTCACCGGGGCCAGATGGGGCAGCAGCAGATATTCACAGATGTCC 4343
Query 862 -------------------------------------------------------------------------- 861
Sbjct 4344 CTGTGAGTAACCAGGGCAGAGGCCAGGGGTCTGGCCTTCCCTTTCTTGGAGCCCTGGGCCAGCTGGGCAAGGCG 4417
Query 862 -------------------------------------------------------------------------- 861
Sbjct 4418 TTGAGAGAAAGATTACCCGGTGACCTTTATCAAAGCAGAGTAAGGAGGGCTTTATTCAGAACCATCACTGTAGG 4491
Query 862 -------------------------------------------------------------------------- 861
Sbjct 4492 TACCAGGACCCCAGCGGTGGGATTTTGTAGTAGGGGAAAGAAAATGGGCTCGACGTTGAATACAGCATGAACAA 4565
Query 862 -------------------------------------------------------------------------- 861
Sbjct 4566 GTGAGAATGTTTGTTATACAAACTATAGGGTGGACTTTTTTTTTCTTTTTTTTAACTTTTTTTTACCTTTTAGT 4639
Query 862 -------------------------------------------------------------------------- 861
Sbjct 4640 GTAAAACTGAACATAGAAAATAAATTCATGAAGAAGGGATATTTTCTGAGGGTGTCCAGGGCTGCCCAACACCT 4713
Query 862 -------------------------------------------------------------------------- 861
Sbjct 4714 CGTCTACCTTCTCTGTCATAGCCCCATTTAAAACACTCTCTCTGGATGAATACACCAAACCTCACAGTCTTTGC 4787
Query 862 -------------------------------------------------------------------------- 861
Sbjct 4788 TCTCTTGCTAGGAAGAGGAGCAAGAGCGTGTTTCACTCTTGGCTCCTGCTTACACACCTGCTGTCCAATGGAAA 4861
Query 862 -------------------------------------------------------------------------- 861
Sbjct 4862 CTACTACTTAAGACATTTAAAAATAGTTGTGGTGATAGCATGTTGTGTTTTGGTTGGTGATGCCAGTTAGTCTC 4935
Query 862 -------------------------------------------------------------------------- 861
Sbjct 4936 TGAAAACTTTCTGTGATGAGTGTAAAATTCTACACCTTAATCTCCTTTCTTGTAGGATCTGGGAAGCAGTATGC 5009
Query 862 -------------------------------------------------------------------------- 861
Sbjct 5010 ACTTGATTGCACCAAAGATTTTACGTTCATAGAAAATTTCTGGCATCTGTGTGAAGAAAGTAAACTATATCTTC 5083
Query 862 --------------------------------- 861
Sbjct 5084 CATTTAGACAAATAAAATATCTTTTTGATAAAA 5116
