Nucleotide Global Alignment
Description
- Query:
- TRCN0000477049
- Subject:
- XM_017315440.1
- Aligned Length:
- 3130
- Identities:
- 1756
- Gaps:
- 1136
Alignment
Query 1 ATGGCCGCCGCGGAGACCCAGTCGCTACGGGAGCAGCCAGAGATGGAAGATGC---TAATTCTGAAAAGAGTAT 71
|||||||||.|||||.|||.|||.||.||||||||..|.||||||||.||||| ||||||||||||||||.|
Sbjct 1 ATGGCCGCCACGGAGCCCCCGTCCCTGCGGGAGCAAGCTGAGATGGATGATGCTGATAATTCTGAAAAGAGTGT 74
Query 72 AAATGAAGAAAATGGAGAAGTATCAGAAGACCAGTCTCAAAATAAGCACAGTCGTCACAAAAAAAAGAAGCATA 145
||||||||||||||||||.||||||||||||||.|||||||||||.||||||||||||||||||||||||||||
Sbjct 75 AAATGAAGAAAATGGAGAGGTATCAGAAGACCAATCTCAAAATAAACACAGTCGTCACAAAAAAAAGAAGCATA 148
Query 146 AACACAGAAGTAAACATAAGAAACATAAACATTCCTCAGAAGAAGACAAGGATAAAAAACATAAACATAAGCAT 219
||||||||||||||||||||||||||||||||||||||||||||||.|.||||||||||||.||||||||||||
Sbjct 149 AACACAGAAGTAAACATAAGAAACATAAACATTCCTCAGAAGAAGATAGGGATAAAAAACACAAACATAAGCAT 222
Query 220 AAACATAAGAAACACAAAAGAAAAGAGGTTATTGATGCTTCTGATAAAGAGGGTATGTCTCCAGCAAAAAGAAC 293
||.||||||||.||||||.|.|||||.|||||.||.|||||.||.|||||.||..||||.||.|||||||||||
Sbjct 223 AAGCATAAGAAGCACAAACGGAAAGAAGTTATCGAGGCTTCCGACAAAGAAGGCCTGTCCCCTGCAAAAAGAAC 296
Query 294 TAAACTTGATGATTTAGCTTTGCTAGAAGACTTGGAAAAACAGAGAGCCTTGATTAAGGCCGAACTTGATAATG 367
|||.||||||||||||||||||||.||||||||||||||.|||||||||||||||||.||.||.||||||||||
Sbjct 297 TAAGCTTGATGATTTAGCTTTGCTGGAAGACTTGGAAAAGCAGAGAGCCTTGATTAAAGCTGAGCTTGATAATG 370
Query 368 AGTTAATGGAAGGAAAGGTCCAGTCTGGTATGGGGCTCATTTTGCAAGGTTATGAGTCTGGCTCTGAAGAAGAG 441
||||||||||.||.||||||||||||||.||||||||||||||||||||.||||||||||||||.||||||||.
Sbjct 371 AGTTAATGGAGGGGAAGGTCCAGTCTGGAATGGGGCTCATTTTGCAAGGCTATGAGTCTGGCTCCGAAGAAGAA 444
Query 442 GGGGAAATTCATGAAAAGGCAAGAAATGGAAATAGGTCTAGTACTAGATCTTCAAGTACAAAGGGGAAACTTGA 515
||.||.|||||.|||||||||||||||||.||.|||||.|||||.||.|||||.|||||...|||.||||||||
Sbjct 445 GGAGAGATTCACGAAAAGGCAAGAAATGGGAACAGGTCCAGTACCAGGTCTTCCAGTACTCGGGGAAAACTTGA 518
Query 516 ACTTGTGGACAATAAAATTACTACAAAGAAACGAAGTAAAAGCAGATCCAAAGAACGGACTAGACATAGGTCTG 589
|.||..||||||.||||.||.|.||||||||||||||||.||||||||||||||||||||.||.||.||.||.|
Sbjct 519 AATTACGGACAACAAAAATAGTGCAAAGAAACGAAGTAAGAGCAGATCCAAAGAACGGACCAGGCACAGATCGG 592
Query 590 ATAAAAAGAAAAGTAAGGGGGGTATTGAAATCGTTAAAGAGAAAACAACTAGGAGCAAGTCAAAGGAGAGGAAA 663
|.||||.||||||.|||||||.|...|||||..|.|.|||||||.|||..|||||||||||.||||||||||.|
Sbjct 593 ACAAAAGGAAAAGCAAGGGGGCTGGGGAAATGCTGAGAGAGAAAGCAAACAGGAGCAAGTCCAAGGAGAGGAGA 666
Query 664 AAATCTAAAAGCCCATCCAAAAGAAGTAAGTCTCAAGATCAAGCAAGGAAATCAAAATCCCCTACCCTTAGAAG 737
|||||.||||||||||||||||||||.|||||||||||.|||||.||.||.|||||.||||||.|.||.|||.|
Sbjct 667 AAATCCAAAAGCCCATCCAAAAGAAGCAAGTCTCAAGACCAAGCTAGAAAGTCAAAGTCCCCTCCACTCAGACG 740
Query 738 GCGATCTCAAGAGAAAATTGGTAAGGCCAGATCTCCTACTGATGATAAGGTTAAAATTGAAGATAAAAGTAAAT 811
|||.||.|||||||||.|.||.|||||||||||||||.||||.||.|||.|.||.|.||||||.|||.|.|||.
Sbjct 741 GCGGTCCCAAGAGAAAGTGGGGAAGGCCAGATCTCCTGCTGAGGAGAAGATGAAGAGTGAAGAGAAAGGCAAAA 814
Query 812 CAAAAGATAGGAAAAAATCCCCAATTATAAATGAAAGTAGAAGTCGCGATCGAGGTAAAAAATCCAGATCCCCA 885
.|||.||||||||||||||.||||||.|||||||| ||.|||||.|||.||..|||||||||||..||||||
Sbjct 815 TAAAGGATAGGAAAAAATCACCAATTGTAAATGAA---AGGAGTCGAGATAGATCTAAAAAATCCAAGTCCCCA 885
Query 886 GTTGATTTAAGAGGTAAATCCAAAGACAGAAGGTCACGGTCCAAAGAGAGAAAATCAAAACGGTCTGAAACTGA 959
|||||.|||||||.||||||||||||||||||||||.|||||||||||.|.||.||||||||.|||||||.|||
Sbjct 886 GTTGACTTAAGAGATAAATCCAAAGACAGAAGGTCAAGGTCCAAAGAGCGGAAGTCAAAACGATCTGAAATTGA 959
Query 960 TAAAGAAAAGAAGCCAATTAAATCTCCCTCTAAAGATGCTTCATCTGGGAAAGAAAATAGGTCACCCAGCAGAA 1033
.|||||||||||||||||||||||.||.||.||.||||||||.||||||||.|||||||||||||||||.||||
Sbjct 960 CAAAGAAAAGAAGCCAATTAAATCACCTTCAAAGGATGCTTCTTCTGGGAAGGAAAATAGGTCACCCAGTAGAA 1033
Query 1034 GACCTGGTCGTAGTCCTAAAAGAAGAAGTTTGTCTCCAAAACCACGTGATAAATCAAGAAGAAGCAGGTCTCCA 1107
|||||||.||||||||||||||||||||||||||||||||||..||.||.||.|||||||||||.||||||||.
Sbjct 1034 GACCTGGCCGTAGTCCTAAAAGAAGAAGTTTGTCTCCAAAACTGCGAGACAAGTCAAGAAGAAGTAGGTCTCCG 1107
Query 1108 CTTTTGAATGATAGAAGATCTAAGCAGAGCAAATACCCCTCGCGGACACTGTCTCCTGGGAGAAGAGCCAAGAG 1181
|||.|.|||||.||||||||||||||||||||||..||.||.||.||.||||||||.||.|||||.||||||||
Sbjct 1108 CTTCTCAATGACAGAAGATCTAAGCAGAGCAAATCGCCTTCTCGAACTCTGTCTCCAGGCAGAAGGGCCAAGAG 1181
Query 1182 CCGATCCTTAGAAAGAAAACGACGAGAACCAGAGAGGAGACGACTTTCTTCTCCAAGAACACGACCTCGAGATG 1255
|||||||||||||||||||||..|||||||||||||||||||||||||||||||.||||||.||||||||||||
Sbjct 1182 CCGATCCTTAGAAAGAAAACGGAGAGAACCAGAGAGGAGACGACTTTCTTCTCCGAGAACAAGACCTCGAGATG 1255
Query 1256 ATATCCTCAGTAGACGTGAAAGATCAAAAGATGCCAGCCCCATCAATAGATGGTCTCCAACCCGAAGAAGAAGT 1329
|||||||..|||||.|||||.|.||||||||||||||||||||||||||.||||||||||||||||||||||||
Sbjct 1256 ATATCCTTGGTAGATGTGAACGGTCAAAAGATGCCAGCCCCATCAATAGGTGGTCTCCAACCCGAAGAAGAAGT 1329
Query 1330 AGATCTCCCATTAGAAGGAGGTCTCGTTCCCCACTCAGACGTAGCAGGTCTCCAAGAAGAAGAAGCAGATCTAC 1403
||.|||||.||||||||||||||.|||||||||.|.|||||.|||||||||||.||||||||||||||.|||.|
Sbjct 1330 AGGTCTCCAATTAGAAGGAGGTCCCGTTCCCCATTGAGACGCAGCAGGTCTCCTAGAAGAAGAAGCAGGTCTCC 1403
Query 1404 TCGGAGAAGGGACAGAGGTCGGAGGAGCAGATCACGCTTGCGAAGGCGGTCTCGATCACGCGGTGGTCGTAGAC 1477
|||||||||.||.||..|.||.||||||||.|||||||||.|.||..|||||||||||||.|||||||.|||..
Sbjct 1404 TCGGAGAAGAGATAGGAGCCGAAGGAGCAGGTCACGCTTGAGGAGAAGGTCTCGATCACGGGGTGGTCATAGGA 1477
Query 1478 GAAGGAGCAGAAGCAAAGTAAAGGAAGATAAATTTAAAGGAAGTCTTTCTGAAGGAATGAAAGTTGAGCAGGAA 1551
||||||||||||||||||||||||||||||||||||||||||||||.||.||||||||||||||||||||.||.
Sbjct 1478 GAAGGAGCAGAAGCAAAGTAAAGGAAGATAAATTTAAAGGAAGTCTCTCAGAAGGAATGAAAGTTGAGCAAGAG 1551
Query 1552 TCTTCGTCTGATGATAACCTTGAAGACTTTGATGTAGAGGAAGAAGATGAAGAAGCCCTAATAGAACAGAGAAG 1625
|||||.||||||||||||||||||||.||||||||.|||||.|||||||||||.||.|||||||||||||||||
Sbjct 1552 TCTTCATCTGATGATAACCTTGAAGATTTTGATGTGGAGGAGGAAGATGAAGAGGCTCTAATAGAACAGAGAAG 1625
Query 1626 AATCCAAAGGCAGGCAATTGTTCAGAAATATAAATACCTTGCTGAAGATAGCAACATGTCTGTGCCATCTGAAC 1699
|||.||.|||||.||||||||.||||||||||||||.|||||||||||||||||.||.||||||||||||||.|
Sbjct 1626 AATACAGAGGCAAGCAATTGTGCAGAAATATAAATATCTTGCTGAAGATAGCAATATATCTGTGCCATCTGAGC 1699
Query 1700 CAAGCAGCCCCCAGAGCAGTACGAGAACACGATCACCATCTCCAGATGACATTCTGGAGCGAGTAGCTGCTGAT 1773
|||||||||||||||||||.||.|||.|||||||.||.||.|||||.|||||..||||||||||.|||||||||
Sbjct 1700 CAAGCAGCCCCCAGAGCAGCACAAGATCACGATCTCCTTCGCCAGACGACATCTTGGAGCGAGTTGCTGCTGAT 1773
Query 1774 GTTAAAGAGTATGAACGGGAAAATGTTGATACATTTGAGGCCTCAGTGAAAGCCAAGCATAATCTAATGACAGT 1847
||.|||||.|||||.|||||.||||||||.||.||||||||||||||.||||||||||||||||||||||||||
Sbjct 1774 GTAAAAGAATATGAGCGGGAGAATGTTGACACCTTTGAGGCCTCAGTAAAAGCCAAGCATAATCTAATGACAGT 1847
Query 1848 TGAACAGAATAATGGTTCATCTCAGAAGAAGTTGTTGGCACCTGATATGTTTACAGAATCTGATGATATGTTTG 1921
|||||||||||||||.|||||||||||||||.|.|||||||||||.||||||||||||||||||||.|||||||
Sbjct 1848 TGAACAGAATAATGGCTCATCTCAGAAGAAGATTTTGGCACCTGACATGTTTACAGAATCTGATGACATGTTTG 1921
Query 1922 CTGCGTATTTTGAT------------------------------------------------------------ 1935
||||.|||||||||
Sbjct 1922 CTGCTTATTTTGATGCTCAACCTAGTACAGCCAGTGAATGTTACTACATTTCATGCCTGTGTGGTAAGGGTACA 1995
Query 1936 ----------------------------------------------AGTGCTCGTCTTCGGGCCGCTGGCATTG 1963
|||||||||||.||.||.||||||||||
Sbjct 1996 AATGTCTCCATGGACAGGGAGGCAGAGAAGGAAATGATGCAAATCGAGTGCTCGTCTCCGAGCTGCTGGCATTG 2069
Query 1964 GAAAAGATTTCAAAGAGAATCCCAACCTCAGAGATAACTGGACCGATGCAGAAGGCTATTATCGTGTGAACATA 2037
|.||||||||||||||.|||||||||||||||||
Sbjct 2070 GGAAAGATTTCAAAGAAAATCCCAACCTCAGAGA---------------------------------------- 2103
Query 2038 GGTGAAGTCCTAGATAAACGTTACAATGTGTATGGCTACACTGGGCAAGGTGTATTCAGTAATGTTGTACGAGC 2111
Sbjct 2104 -------------------------------------------------------------------------- 2103
Query 2112 CAGAGATAATGCAAGAGCCAACCAAGAAGTGGCTGTAAAGATCATCAGAAACAATGAGCTCATGCAAAAGACTG 2185
Sbjct 2104 -------------------------------------------------------------------------- 2103
Query 2186 GTTTAAAAGAATTAGAGTTCTTGAAAAAACTTAATGATGCTGATCCTGATGACAAATTTCATTGTCTGAGACTC 2259
Sbjct 2104 -------------------------------------------------------------------------- 2103
Query 2260 TTAAGGCACTTCTATCACAAGCAGCATCTTTGTCTGGTATTCGAGCCTCTCAGCATGAACTTACGAGAGGTGTT 2333
Sbjct 2104 -------------------------------------------------------------------------- 2103
Query 2334 AAAAAAATATGGTAAAGATGTTGGTCTTCATATTAAAGCTGTAAGATCCTATAGTCAGCAGTTGTTCCTGGCAT 2407
Sbjct 2104 -------------------------------------------------------------------------- 2103
Query 2408 TGAAACTCCTTAAAAGATGCAATATCCTACATGCAGATATCAAGCCAGACAATATCCTGGTTAATGAATCCAAA 2481
Sbjct 2104 -------------------------------------------------------------------------- 2103
Query 2482 ACTATTTTAAAGCTTTGCGATTTTGGGTCGGCTTCACATGTTGCGGATAATGACATAACACCTTATCTTTTCAG 2555
Sbjct 2104 -------------------------------------------------------------------------- 2103
Query 2556 TAGATTTTATCGTGCTCCTGAAATCATTATAGGTAAAAGCTATGACTATGGTATAGATATGTGGTCTGTAGGTT 2629
Sbjct 2104 -------------------------------------------------------------------------- 2103
Query 2630 GCACCTTATACGAACTCTATACTGGAAAAATTTTATTCCCTGGCAAAACCAATAACCATATGCTGAAGCTTGCA 2703
Sbjct 2104 -------------------------------------------------------------------------- 2103
Query 2704 ATGGATCTCAAAGGAAAGATGCCAAATAAGATGATTCGAAAAGGTGTGTTCAAAGATCAGCATTTTGATCAAAA 2777
Sbjct 2104 -------------------------------------------------------------------------- 2103
Query 2778 TCTCAACTTCATGTACATAGAAGTTGATAAAGTAACAGAGAGGGAGAAAGTTACTGTTATGAGCACCATTAATC 2851
Sbjct 2104 -------------------------------------------------------------------------- 2103
Query 2852 CAACTAAGGACCTGTTGGCTGACTTGATTGGGTGCCAGAGACTTCCTGAAGACCAACGTAAGAAAGTACACCAG 2925
Sbjct 2104 -------------------------------------------------------------------------- 2103
Query 2926 CTAAAGGACTTGTTGGACCAGATTCTGATGTTGGACCCAGCTAAACGAATTAGCATCAACCAGGCCCTACAGCA 2999
Sbjct 2104 -------------------------------------------------------------------------- 2103
Query 3000 CGCCTTCATCCAGGAAAAAATT 3021
Sbjct 2104 ---------------------- 2103
