Nucleotide Global Alignment

Description

• Query: TRCN0000477269
• Subject: XM_011241916.2
• Aligned Length: 1948
• Identities: 1496
• Gaps: 200

Alignment

Query    1  ------------------------------------------------------------------------AT  2
                                                                                    ||
Sbjct    1  ATGGAGTCCCCGGGAGGCTCCGCCCCCCTGCTCGGGCTGGAGCTTTGCGCGGCCGCTAGGGACTCGGCGGCCAT  74

Query    3  GGCGGGGCCGGGCGTC---------CCCGGTGCCCCCGCAGCGCGCTGGAAACGCCACATCGTGCGGCAGCTGC  67
            |||.||.||.||||.|         |||.|.||.|||||.||...||||||.||||||||||||||||||||||
Sbjct   75  GGCAGGACCTGGCGCCCCCTGCGATCCCTGCGCGCCCGCCGCTGTCTGGAAGCGCCACATCGTGCGGCAGCTGC  148

Query   68  GGCTTCGGGACCGTACGCAAAAGGCGCTTTTCCTGGAGCTGGTGCCGGCCTATAACCATCTCTTAGAGAAGGCT  141
            |||.|||||||||.||||||||||||||.|||||||||||.||||||||.||||||||||||.|||||||||||
Sbjct  149  GGCATCGGGACCGCACGCAAAAGGCGCTCTTCCTGGAGCTAGTGCCGGCTTATAACCATCTCCTAGAGAAGGCT  222

Query  142  GAGCTGCTGGACAAGTTCTCAAAGAAGCTGCAGCCGGAGCCAAACAGTGTCACTC-CCACCACCCACCAGGGCC  214
            ||.|||||.|.||||||||||.|.|||.||.||.|.||.|||||...||.|| || |||||...||..|||.|.
Sbjct  223  GAACTGCTAGCCAAGTTCTCAGAAAAGTTGAAGTCCGAACCAAAGGATGCCA-TCTCCACCCGACATGAGGACT  295

Query  215  CCTGGGAGGAG---TCAGAGCTTGACTCAGACCAAGTCCCATCACTGGTCGCACTGAGGGTGAAGTGGCAGGAG  285
            ...||||||||   ||||.|...|.|.|.|||||||||.||||||..|.|.|.||||||||||||||||||.||
Sbjct  296  GGAGGGAGGAGGTCTCAGGGACAGGCCCTGACCAAGTCTCATCACCAGCCTCTCTGAGGGTGAAGTGGCAGCAG  369

Query  286  GAGGAGGAGGGGCTCCGGCTGGTCTGTGGTGAGATGGCCTACCAGGTGGTGGAGAAGGGCGCGGCCCTGGGCAC  359
            |||.||.|||||||.|.||||||||||||||||||||||||||||||||||.|||||.||||.|||||.|.|||
Sbjct  370  GAGAAGAAGGGGCTGCAGCTGGTCTGTGGTGAGATGGCCTACCAGGTGGTGAAGAAGAGCGCAGCCCTAGACAC  443

Query  360  GCTGGAGTCGGAGCTGCAGCAGAGGCAAAGCAGGCTGGCAGCCCTGGAGGCCCGCGTGGCGCAGCTGCGAGAGG  433
            .|||.||||..|||||.||.||.||||...||||.|||.|||||||.|||||.||||||.||||||.|..||||
Sbjct  444  CCTGCAGTCACAGCTGGAGGAGCGGCAGGACAGGTTGGAAGCCCTGCAGGCCTGCGTGGTGCAGCTACAGGAGG  517

Query  434  CGCGGGCGCAGCAGGCCCAGCAGGTGGAGGAGTGGCGGGCGCAGAATGCGGTGCAGCGGGCAGCCTACGAGGCG  507
            |||||||.||||||.|||.||||.|||||||..|||..|||.||||.||.|..|||.|.|.||||||.|||.||
Sbjct  518  CGCGGGCTCAGCAGTCCCGGCAGCTGGAGGAACGGCAAGCGGAGAACGCAGCACAGAGAGAAGCCTATGAGACG  591

Query  508  CTGCGCGCGCACGTCGGGCTCCGGGAGGCGGCACTGCGCAGGCTCCAGGAAGAGGCGCGCGACCTGCTGGAGAG  581
            ||||.|..|||.|..|.||.||.|||||||||||||||||||||||||||||||||.||||||.||||||||..
Sbjct  592  CTGCTCCAGCAAGCTGTGCACCAGGAGGCGGCACTGCGCAGGCTCCAGGAAGAGGCACGCGACTTGCTGGAGCA  665

Query  582  GCTCGTGCAGCGCAAGGCGCGCGCCGCGGCCGAGCGCAACCTGCGCAACGAGCGCCGGGAGCGGGCCAAGCAGG  655
            |||.||||||||.||||||||||||||.||.||||||||.||.||.||.|||||..|.|||.|||||||.||||
Sbjct  666  GCTTGTGCAGCGTAAGGCGCGCGCCGCCGCTGAGCGCAATCTACGTAATGAGCGTAGAGAGAGGGCCAACCAGG  739

Query  656  CGCGGGTGTCCCAGGAGCTGAAGAAGGCTGCCAAGCGGACCGTGAGCATCAGCGAGGGCCCGGACACCCTAGGC  729
            |.|.|||||||||||||||||||||.||.||.||||||||.|||||||||||||||..|||..||||.||||..
Sbjct  740  CTCTGGTGTCCCAGGAGCTGAAGAAAGCGGCTAAGCGGACTGTGAGCATCAGCGAGATCCCAAACACTCTAGAA  813

Query  730  GATTGGATGAGGGAGAGAAGGGAGACTCTGGCTCTGGCCCCTG------AGCCAGAGCCCCTGGAGAAGGAAGC  797
            |||.|||    .||.||||  ||||||.|||||||.||.||||      .|||.|||..|...||||..||..|
Sbjct  814  GATGGGA----CGAAAGAA--GAGACTGTGGCTCTAGCTCCTGCCGCTCTGCCTGAGTTCTCAGAGAGTGAGAC  881

Query  798  TTGTGAGAAGTGGAAGAGGCCCTTCAGGTCTGCCTCAGCCACCTCCCTGACGCTGTCCCACTGTGTGGATGTGG  871
            ||||||.||.|||||||||||.||||||||||||||.||||||||||||||.|||||||.||||||||||||||
Sbjct  882  TTGTGAAAAATGGAAGAGGCCTTTCAGGTCTGCCTCGGCCACCTCCCTGACACTGTCCCGCTGTGTGGATGTGG  955

Query  872  TGAAGGGGCTTCTGGATTTTAAGAAGAGGAGAGGTCACTCAATTGGGGGAGCCCCTGAGCAGCGATACCAGATC  945
            ||||||||||..||||.||.|||||.||.|||||||||||..|||||||.||.|||||||||||.|||||.|.|
Sbjct  956  TGAAGGGGCTGTTGGACTTCAAGAAAAGAAGAGGTCACTCGGTTGGGGGCGCACCTGAGCAGCGGTACCAAAGC  1029

Query  946  ATCCCTGTGTGTGTGGCTGCCCGACTTCCTACCCGGGCTCAGGATGTGCTGGATGCCCACCTCTCTGAGGTCAA  1019
            |||||||||||||||.||||||.|.||||..|||.||||||||||||..||||||||||.||||||||||||||
Sbjct 1030  ATCCCTGTGTGTGTGTCTGCCCAAATTCCCTCCCAGGCTCAGGATGTCTTGGATGCCCATCTCTCTGAGGTCAA  1103

Query 1020  TGCTGTTCGTTTTGGCCCCAACAGCAGCCTCCTGGCCACTGGAGGGGCTGACCGCCTGATCCACCTCTGGAATG  1093
            |||||||.||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||||
Sbjct 1104  TGCTGTTTGTTTTGGCCCCAACAGCAGCCTCCTGGCCACTGGAGGGGCTGACCGGCTGATCCACCTCTGGAATG  1177

Query 1094  TTGTGGGAAGTCGCCTGGAGGCCAACCAGACCCTGGAGGGAGCTGGTGGCAGCATCACCAGTGTGGACTTTGAC  1167
            ||||.|||.||||||||||||||||||||||||||||.||||||||.||||||||||||||||||||.||||||
Sbjct 1178  TTGTAGGAGGTCGCCTGGAGGCCAACCAGACCCTGGAAGGAGCTGGCGGCAGCATCACCAGTGTGGATTTTGAC  1251

Query 1168  CCCTCGGGCTACCAGGTTTTAGCAGCAACTTACAACCAGGCTGCCCAGCTCTGGAAGGTGGGGGAGGCACAGTC  1241
            |||||.||||.|||||||||.|||||.|||||||||||||||||||||||||||||||||||.|||.|.|||||
Sbjct 1252  CCCTCAGGCTCCCAGGTTTTGGCAGCTACTTACAACCAGGCTGCCCAGCTCTGGAAGGTGGGAGAGACTCAGTC  1325

Query 1242  CAAGGAGACACTGTCTGGACACAAGGATAAGGTGACAGCTGCCAAATTCAAGCTAACGAGGCACCAGGCAGTGA  1315
            ||||||.|||.||||.|||||||||||.||.|||||.||||||||||||||||||||.||||||||||||||||
Sbjct 1326  CAAGGAAACATTGTCCGGACACAAGGACAAAGTGACTGCTGCCAAATTCAAGCTAACAAGGCACCAGGCAGTGA  1399

Query 1316  CTGGGAGCCGCGACCGGACAGTGAAGGAGTGGGACCTCGGCCGTGCCTATTGCTCCAGGACCATCAATGTCCTT  1389
            ||||||||||.||||||||||||||||||||||||||.|||||.|||||.||.||||||||.||||||||.|||
Sbjct 1400  CTGGGAGCCGAGACCGGACAGTGAAGGAGTGGGACCTGGGCCGCGCCTACTGTTCCAGGACTATCAATGTACTT  1473

Query 1390  TCCTACTGTAATGACGTGGTGTGTGGGGACCATATCATCATTAGTGGCCACAATGACCAGAAGATCCGGTTCTG  1463
            ||||||||.||||||||||||||.||||||||.||||||||.|||||||||||||||||.||||||||||||||
Sbjct 1474  TCCTACTGCAATGACGTGGTGTGCGGGGACCACATCATCATCAGTGGCCACAATGACCAAAAGATCCGGTTCTG  1547

Query 1464  GGACAGCAGGGGGCCCCACTGCACCCAGGTCATCCCTGTGCAGGGCCGGGTCACCTCCCTGAGCCTCAGCCACG  1537
            ||||||||||||.||.|||||||.||||||||||||.||||||||||||||.|||||||||..|||||||.|.|
Sbjct 1548  GGACAGCAGGGGCCCTCACTGCATCCAGGTCATCCCCGTGCAGGGCCGGGTTACCTCCCTGCACCTCAGCTATG  1621

Query 1538  ACCAACTGCACCTGCTCAGCTGTTCCCGAGACAACACACTCAAGGTCATCGACCTGCGTGTCAGCAACATCCGC  1611
            ||||.|||||.|||||.|||||||||||||||||||||||||||||.|||||||||||..|||||||.|||||.
Sbjct 1622  ACCAGCTGCATCTGCTTAGCTGTTCCCGAGACAACACACTCAAGGTTATCGACCTGCGAATCAGCAATATCCGA  1695

Query 1612  CAGGTGTTCAGGGCCGATGGCTTCAAGTGTGGTTCTGACTGGACCAAAGCTGTGTTCAGCCCGGACAGAAGCTA  1685
            ||||||||||||||.||||||||||||||..|||||||||||||||||||||||||                  
Sbjct 1696  CAGGTGTTCAGGGCAGATGGCTTCAAGTGCAGTTCTGACTGGACCAAAGCTGTGTT------------------  1751

Query 1686  TGCACTGGCAGGCTCCTGTGATGGGGCCCTTTACATCTGGGATGTGGACACCGGGAAACTGGAGAGCAGACTAC  1759
                    |||||||.|...|.||.|.|||.|||||||||||||||.||||||||||||||||||.|||.||||
Sbjct 1752  --------CAGGCTCTTCAAACGGCGACCTGTACATCTGGGATGTGAACACCGGGAAACTGGAGACCAGCCTAC  1817

Query 1760  AGGGACCCCATTGCGCTGCCGTCAACGCCGTGGCCTGGTGCTACTCCGGGAGCCACATGGTGAGCGTGGACCAG  1833
            ||||||||||.|||.||||.||                                                    
Sbjct 1818  AGGGACCCCACTGCACTGCTGT----------------------------------------------------  1839

Query 1834  GGCAGGAAGGTTGTGCTCTGGCAG  1857
                                    
Sbjct 1840  ------------------------  1839