Nucleotide Global Alignment
Description
- Query:
- TRCN0000477269
- Subject:
- XR_001778005.1
- Aligned Length:
- 2890
- Identities:
- 1589
- Gaps:
- 1040
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GGGAGGCTTCAATCCCTGCTGCTTACTCCGGGACAGAAACGCACACCTCTGGGACTGAGGGTTTTTGCTGGGCC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GCAGCAGCACCTGCTTTGAGGTGTCCAGATCTCCCCGACAAAAGCGCTTGGTACAGCCCGGGGATTCCCCGCTG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CTGCCGCCCTGACGTCATGGAGTCCCCGGGAGGCTCCGCCCCCCTGCTCGGGCTGGAGCTTTGCGCGGCCGCTA 222
Query 1 --------------ATGGCGGGGCCGGGCGTC---------CCCGGTGCCCCCGCAGCGCGCTGGAAACGCCAC 51
|||||.||.||.||||.| |||.|.||.|||||.||...||||||.||||||
Sbjct 223 GGGACTCGGCGGCCATGGCAGGACCTGGCGCCCCCTGCGATCCCTGCGCGCCCGCCGCTGTCTGGAAGCGCCAC 296
Query 52 ATCGTGCGGCAGCTGCGGCTTCGGGACCGTACGCAAAAGGCGCTTTTCCTGGAGCTGGTGCCGGCCTATAACCA 125
|||||||||||||||||||.|||||||||.||||||||||||||.|||||||||||.||||||||.||||||||
Sbjct 297 ATCGTGCGGCAGCTGCGGCATCGGGACCGCACGCAAAAGGCGCTCTTCCTGGAGCTAGTGCCGGCTTATAACCA 370
Query 126 TCTCTTAGAGAAGGCTGAGCTGCTGGACAAGTTCTCAAAGAAGCTGCAGCCGGAGCCAAACAGTGTCACTC-CC 198
||||.|||||||||||||.|||||.|.||||||||||.|.|||.||.||.|.||.|||||...||.|| || ||
Sbjct 371 TCTCCTAGAGAAGGCTGAACTGCTAGCCAAGTTCTCAGAAAAGTTGAAGTCCGAACCAAAGGATGCCA-TCTCC 443
Query 199 ACCACCCACCAGGGCCCCTGGGAGGAG---TCAGAGCTTGACTCAGACCAAGTCCCATCACTGGTCGCACTGAG 269
|||...||..|||.|....|||||||| ||||.|...|.|.|.|||||||||.||||||..|.|.|.|||||
Sbjct 444 ACCCGACATGAGGACTGGAGGGAGGAGGTCTCAGGGACAGGCCCTGACCAAGTCTCATCACCAGCCTCTCTGAG 517
Query 270 GGTGAAGTGGCAGGAGGAGGAGGAGGGGCTCCGGCTGGTCTGTGGTGAGATGGCCTACCAGGTGGTGGAGAAGG 343
|||||||||||||.|||||.||.|||||||.|.||||||||||||||||||||||||||||||||||.|||||.
Sbjct 518 GGTGAAGTGGCAGCAGGAGAAGAAGGGGCTGCAGCTGGTCTGTGGTGAGATGGCCTACCAGGTGGTGAAGAAGA 591
Query 344 GCGCGGCCCTGGGCACGCTGGAGTCGGAGCTGCAGCAGAGGCAAAGCAGGCTGGCAGCCCTGGAGGCCCGCGTG 417
||||.|||||.|.|||.|||.||||..|||||.||.||.||||...||||.|||.|||||||.|||||.|||||
Sbjct 592 GCGCAGCCCTAGACACCCTGCAGTCACAGCTGGAGGAGCGGCAGGACAGGTTGGAAGCCCTGCAGGCCTGCGTG 665
Query 418 GCGCAGCTGCGAGAGGCGCGGGCGCAGCAGGCCCAGCAGGTGGAGGAGTGGCGGGCGCAGAATGCGGTGCAGCG 491
|.||||||.|..|||||||||||.||||||.|||.||||.|||||||..|||..|||.||||.||.|..|||.|
Sbjct 666 GTGCAGCTACAGGAGGCGCGGGCTCAGCAGTCCCGGCAGCTGGAGGAACGGCAAGCGGAGAACGCAGCACAGAG 739
Query 492 GGCAGCCTACGAGGCGCTGCGCGCGCACGTCGGGCTCCGGGAGGCGGCACTGCGCAGGCTCCAGGAAGAGGCGC 565
.|.||||||.|||.||||||.|..|||.|..|.||.||.|||||||||||||||||||||||||||||||||.|
Sbjct 740 AGAAGCCTATGAGACGCTGCTCCAGCAAGCTGTGCACCAGGAGGCGGCACTGCGCAGGCTCCAGGAAGAGGCAC 813
Query 566 GCGACCTGCTGGAGAGGCTCGTGCAGCGCAAGGCGCGCGCCGCGGCCGAGCGCAACCTGCGCAACGAGCGCCGG 639
|||||.||||||||..|||.||||||||.||||||||||||||.||.||||||||.||.||.||.|||||..|.
Sbjct 814 GCGACTTGCTGGAGCAGCTTGTGCAGCGTAAGGCGCGCGCCGCCGCTGAGCGCAATCTACGTAATGAGCGTAGA 887
Query 640 GAGCGGGCCAAGCAGGCGCGGGTGTCCCAGGAGCTGAAGAAGGCTGCCAAGCGGACCGTGAGCATCAGCGAGGG 713
|||.|||||||.|||||.|.|||||||||||||||||||||.||.||.||||||||.|||||||||||||||..
Sbjct 888 GAGAGGGCCAACCAGGCTCTGGTGTCCCAGGAGCTGAAGAAAGCGGCTAAGCGGACTGTGAGCATCAGCGAGAT 961
Query 714 CCCGGACACCCTAGGCGATTGGATGAGGGAGAGAAGGGAGACTCTGGCTCTGGCCCCTG------AGCCAGAGC 781
|||..||||.||||..|||.||| .||.|||| ||||||.|||||||.||.|||| .|||.|||.
Sbjct 962 CCCAAACACTCTAGAAGATGGGA----CGAAAGAA--GAGACTGTGGCTCTAGCTCCTGCCGCTCTGCCTGAGT 1029
Query 782 CCCTGGAGAAGGAAGCTTGTGAGAAGTGGAAGAGGCCCTTCAGGTCTGCCTCAGCCACCTCCCTGACGCTGTCC 855
.|...||||..||..|||||||.||.|||||||||||.||||||||||||||.||||||||||||||.||||||
Sbjct 1030 TCTCAGAGAGTGAGACTTGTGAAAAATGGAAGAGGCCTTTCAGGTCTGCCTCGGCCACCTCCCTGACACTGTCC 1103
Query 856 CACTGTGTGGATGTGGTGAAGGGGCTTCTGGATTTTAAGAAGAGGAGAGGTCACTCAATTGGGGGAGCCCCTGA 929
|.||||||||||||||||||||||||..||||.||.|||||.||.|||||||||||..|||||||.||.|||||
Sbjct 1104 CGCTGTGTGGATGTGGTGAAGGGGCTGTTGGACTTCAAGAAAAGAAGAGGTCACTCGGTTGGGGGCGCACCTGA 1177
Query 930 GCAGCGATACCAGATCATCCCTGTGTGTGTGGCTGCCCGACTTCCTACCCGGGCTCAGGATGTGCTGGATGCCC 1003
||||||.|||||.|.||||||||||||||||.||||||.|.||||..|||.||||||||||||..|||||||||
Sbjct 1178 GCAGCGGTACCAAAGCATCCCTGTGTGTGTGTCTGCCCAAATTCCCTCCCAGGCTCAGGATGTCTTGGATGCCC 1251
Query 1004 ACCTCTCTGAGGTCAATGCTGTTCGTTTTGGCCCCAACAGCAGCCTCCTGGCCACTGGAGGGGCTGACCGCCTG 1077
|.|||||||||||||||||||||.||||||||||||||||||||||||||||||||||||||||||||||.|||
Sbjct 1252 ATCTCTCTGAGGTCAATGCTGTTTGTTTTGGCCCCAACAGCAGCCTCCTGGCCACTGGAGGGGCTGACCGGCTG 1325
Query 1078 ATCCACCTCTGGAATGTTGTGGGAAGTCGCCTGGAGGCCAACCAGACCCTGGAGGGAGCTGGTGGCAGCATCAC 1151
||||||||||||||||||||.|||.||||||||||||||||||||||||||||.||||||||.|||||||||||
Sbjct 1326 ATCCACCTCTGGAATGTTGTAGGAGGTCGCCTGGAGGCCAACCAGACCCTGGAAGGAGCTGGCGGCAGCATCAC 1399
Query 1152 CAGTGTGGACTTTGACCCCTC----------------------------------------------------- 1172
|||||||||.|||||||||||
Sbjct 1400 CAGTGTGGATTTTGACCCCTCAGTAAGGAGACTTTGTCCCACAGCATAGATGTCACTGCAGTCTCCACACTGGG 1473
Query 1173 -------------------------------------------------------------------------- 1172
Sbjct 1474 CAGTGGGCTCCCCTTGGAGCCATGGCTCGCCTCAGTGACAAGGAAGCTTGGAGACAGCCTCTACCCTGGCTCTC 1547
Query 1173 -----------------------------------------------GGGCTACCAGGTTTTAGCAGCAACTTA 1199
|||||.|||||||||.|||||.|||||
Sbjct 1548 TGACCTGATCTAGTGATGTCCAGGGCCTTTCCTTCTCCCTCTCTCCAGGGCTCCCAGGTTTTGGCAGCTACTTA 1621
Query 1200 CAACCAGGCTGCCCAGCTCTGGAAGGTGGGGGAGGCACAGTCCA------------------------------ 1243
||||||||||||||||||||||||||||||.|||.|.|||||||
Sbjct 1622 CAACCAGGCTGCCCAGCTCTGGAAGGTGGGAGAGACTCAGTCCAAGGTGAGGCCCAGCTGGGGAGGTTGCCTAA 1695
Query 1244 -------------------------------------------------------------------------- 1243
Sbjct 1696 GGGTTAAAGGGTTATTACTTAAGATTTGCAGAGTGGTTATTTGGGGGGCTTGGATTAATGTGTGCTTTCTATGG 1769
Query 1244 ----AGGAGACACTGTCTGGACACAAGGATAAGGTGACAGCTGCCAAATTCAAGCTAACGAGGCACCAGGCAGT 1313
||||.|||.||||.|||||||||||.||.|||||.||||||||||||||||||||.||||||||||||||
Sbjct 1770 GGACAGGAAACATTGTCCGGACACAAGGACAAAGTGACTGCTGCCAAATTCAAGCTAACAAGGCACCAGGCAGT 1843
Query 1314 GACTGGGAGCCGCGACCGGACAGTGAAGGAGTGGGACCTCGGCCGTGCCTA-------------------TTGC 1368
||||||||||||.||||||||||||||||||||||||||.|||||.||||| ||||
Sbjct 1844 GACTGGGAGCCGAGACCGGACAGTGAAGGAGTGGGACCTGGGCCGCGCCTACTGTGAGGCCCAATCCCATTTGC 1917
Query 1369 -------------------------------------------------------------------------- 1368
Sbjct 1918 CCCCAGCTCTCAGTCATCGGGGCCCTTACCTTGCTATGTTGTGGTAGCCGCGGGACTCATATTCATTTGGGCTC 1991
Query 1369 -----------------------------------------------------------------------TCC 1371
|||
Sbjct 1992 AGCCTTCTAATGATTTCCTTCTCTGTCACTGCTGCTCCTTTCCTGCTTTCTTGGTAACCCTGGCCTTTGGTTCC 2065
Query 1372 AGGACCATCAATGTCCTTTCCTACTGTAATGACGTGGTGTGTGGGGACCATATCATCATTAGTGGCCACAATGA 1445
|||||.||||||||.|||||||||||.||||||||||||||.||||||||.||||||||.||||||||||||||
Sbjct 2066 AGGACTATCAATGTACTTTCCTACTGCAATGACGTGGTGTGCGGGGACCACATCATCATCAGTGGCCACAATGA 2139
Query 1446 CCAGAAGATCCGGTTCTGGGACAGCAGGGGGCCCCACTGCACCCAGGTCATCCCTGTGCAGGGCCGGGTCACCT 1519
|||.||||||||||||||||||||||||||.||.|||||||.||||||||||||.||||||||||||||.||||
Sbjct 2140 CCAAAAGATCCGGTTCTGGGACAGCAGGGGCCCTCACTGCATCCAGGTCATCCCCGTGCAGGGCCGGGTTACCT 2213
Query 1520 CCCTGAGCCTCAGCCACGACCAACTGCACCTGCTCAGCTGTTCCCGAGACAACACACTCAAGGTCATCGACCTG 1593
|||||..|||||||.|.|||||.|||||.|||||.|||||||||||||||||||||||||||||.|||||||||
Sbjct 2214 CCCTGCACCTCAGCTATGACCAGCTGCATCTGCTTAGCTGTTCCCGAGACAACACACTCAAGGTTATCGACCTG 2287
Query 1594 CGTGTCAGCAACATCCGCCAGGTGTTCAGGGCCGATGGCTTCAAGTGTGGTTCTGACTGGACCAAAGCTGTGTT 1667
||..|||||||.|||||.||||||||||||||.||||||||||||||..|||||||||||||||||||||||||
Sbjct 2288 CGAATCAGCAATATCCGACAGGTGTTCAGGGCAGATGGCTTCAAGTGCAGTTCTGACTGGACCAAAGCTGTGTT 2361
Query 1668 CAGCCCGGACAGAAGCTATGCACTGGCAGGCTCCTGTGATGGGGCCCTTTACATCTGGGATGTGGACACCGGGA 1741
||||||.||||||||||||||||||||||||||.|...|.||.|.|||.|||||||||||||||.|||||||||
Sbjct 2362 CAGCCCTGACAGAAGCTATGCACTGGCAGGCTCTTCAAACGGCGACCTGTACATCTGGGATGTGAACACCGGGA 2435
Query 1742 AACTGGAGAGCAGACTACAGGGACCCCATT-------------------------------------------- 1771
|||||||||.|||.||||||||||||||.|
Sbjct 2436 AACTGGAGACCAGCCTACAGGGACCCCACTGAGGCTTCTCAAACCGCCTGCTGGTTGGATGTCCAGGGTCAGAG 2509
Query 1772 -----------------------------------------------------GCGCTGCCGTCAACGCCGTGG 1792
||.||||.||.||.|||||||
Sbjct 2510 TAAGGCTGCCTGCCTGCTCCTGCTGCCCTCCTGAGGTCTGTCTTCCCTCTTCAGCACTGCTGTTAATGCCGTGG 2583
Query 1793 CCTGGTGCTACTCCGGGAGCCACATGGTGAGCGTGGACCAGGGCAGGAAGGTTGTGCTCTGGCAG--------- 1857
|.|||||||.||||||||.||||.|.|||||.||||||||.|||||||||||.|||||||||||.
Sbjct 2584 CTTGGTGCTTCTCCGGGAACCACGTTGTGAGTGTGGACCAAGGCAGGAAGGTGGTGCTCTGGCACTGAGTGGCA 2657
Query 1858 -------------------------------------------------------------------------- 1857
Sbjct 2658 CAAGTTCCCTGTATGGGTTGGACTCTGAAGCCAGAAGCCAGAGAACAGCTTCCCTGTGCTCAGGACTCCAGAGC 2731
Query 1858 -------------------------------------------------------------------------- 1857
Sbjct 2732 TGGGGTTGGGGTCTACTACAGAATTCATGTGAGGGCCAGGCAGGACCTGGCCTGTTTGTTAAAAATCAAAGTGT 2805
Query 1858 -------------------------------------------------------------------------- 1857
Sbjct 2806 GGGTTAGGAACTACAGTTTTGTTTTTTAAAATCTATTTGTTTACTCTCTTCAGTGTTAAAAACTGTATCTAAGC 2879
Query 1858 ---- 1857
Sbjct 2880 CGTG 2883
