Nucleotide Global Alignment
Description
- Query:
- TRCN0000477269
- Subject:
- XR_001778007.1
- Aligned Length:
- 3628
- Identities:
- 1591
- Gaps:
- 1778
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GGGAGGCTTCAATCCCTGCTGCTTACTCCGGGACAGAAACGCACACCTCTGGGACTGAGGGTTTTTGCTGGGCC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GCAGCAGCACCTGCTTTGAGGTGTCCAGATCTCCCCGACAAAAGCGCTTGGTACAGCCCGGGGATTCCCCGCTG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CTGCCGCCCTGACGTCATGGAGTCCCCGGGAGGCTCCGCCCCCCTGCTCGGGCTGGAGCTTTGCGCGGCCGCTA 222
Query 1 --------------ATGGCGGGGCCGGGCGTC---------CCCGGTGCCCCCGCAGCGCGCTGGAAACGCCAC 51
|||||.||.||.||||.| |||.|.||.|||||.||...||||||.||||||
Sbjct 223 GGGACTCGGCGGCCATGGCAGGACCTGGCGCCCCCTGCGATCCCTGCGCGCCCGCCGCTGTCTGGAAGCGCCAC 296
Query 52 ATCGTGCGGCAGCTGCGGCTTCGGGACCGTACGCAAAAGGCGCTTTTCCTGGAGCTGGTGCCGGCCTATAACCA 125
|||||||||||||||||||.|||||||||.||||||||||||||.|||||||||||.||||||||.||||||||
Sbjct 297 ATCGTGCGGCAGCTGCGGCATCGGGACCGCACGCAAAAGGCGCTCTTCCTGGAGCTAGTGCCGGCTTATAACCA 370
Query 126 TCTCTTAGAGAAGGCTGAGCTGCTGGACAAGTTCTCAAAGAAGCTGCAGCCGGAGCCAAACAGTGTCACTC-CC 198
||||.|||||||||||||.|||||.|.||||||||||.|.|||.||.||.|.||.|||||...||.|| || ||
Sbjct 371 TCTCCTAGAGAAGGCTGAACTGCTAGCCAAGTTCTCAGAAAAGTTGAAGTCCGAACCAAAGGATGCCA-TCTCC 443
Query 199 ACCACCCACCAGGGCCCCTGGGAGGAG---TCAGAGCTTGACTCAGACCAAGTCCCATCACTGGTCGCACTGAG 269
|||...||..|||.|....|||||||| ||||.|...|.|.|.|||||||||.||||||..|.|.|.|||||
Sbjct 444 ACCCGACATGAGGACTGGAGGGAGGAGGTCTCAGGGACAGGCCCTGACCAAGTCTCATCACCAGCCTCTCTGAG 517
Query 270 GGTGAAGTGGCAGGAGGAGGAGGAGGGGCTCCGGCTGGTCTGTGGTGAGATGGCCTACCAGGTGGTGGAGAAGG 343
|||||||||||||.|||||.||.|||||||.|.||||||||||||||||||||||||||||||||||.|||||.
Sbjct 518 GGTGAAGTGGCAGCAGGAGAAGAAGGGGCTGCAGCTGGTCTGTGGTGAGATGGCCTACCAGGTGGTGAAGAAGA 591
Query 344 GCGCGGCCCTGGGCACGCTGGAGTCGGAGCTGCAGCAGAGGCAAAGCAGGCTGGCAGCCCTGGAGGCCCGCGTG 417
||||.|||||.|.|||.|||.||||..|||||.||.||.||||...||||.|||.|||||||.|||||.|||||
Sbjct 592 GCGCAGCCCTAGACACCCTGCAGTCACAGCTGGAGGAGCGGCAGGACAGGTTGGAAGCCCTGCAGGCCTGCGTG 665
Query 418 GCGCAGCTGCGAGAGGCGCGGGCGCAGCAGGCCCAGCAGGTGGAGGAGTGGCGGGCGCAGAATGCGGTGCAGCG 491
|.||||||.|..|||||||||||.||||||.|||.||||.|||||||..|||..|||.||||.||.|..|||.|
Sbjct 666 GTGCAGCTACAGGAGGCGCGGGCTCAGCAGTCCCGGCAGCTGGAGGAACGGCAAGCGGAGAACGCAGCACAGAG 739
Query 492 GGCAGCCTACGAGGCGCTGCGCGCGCACGTCGGGCTCCGGGAGGCGGCACTGCGCAGGCTCCAGGAAGAGGCGC 565
.|.||||||.|||.||||||.|..|||.|..|.||.||.|||||||||||||||||||||||||||||||||.|
Sbjct 740 AGAAGCCTATGAGACGCTGCTCCAGCAAGCTGTGCACCAGGAGGCGGCACTGCGCAGGCTCCAGGAAGAGGCAC 813
Query 566 GCGACCTGCTGGAGAGGCTCGTGCAGCGCAAGGCGCGCGCCGCGGCCGAGCGCAACCTGCGCAACGAGCGCCGG 639
|||||.||||||||..|||.||||||||.||||||||||||||.||.||||||||.||.||.||.|||||..|.
Sbjct 814 GCGACTTGCTGGAGCAGCTTGTGCAGCGTAAGGCGCGCGCCGCCGCTGAGCGCAATCTACGTAATGAGCGTAGA 887
Query 640 GAGCGGGCCAAGCAGGCGCGGGTGTCCCAGGAGCTGAAGAAGGCTGCCAAGCGGACCGTGAGCATCAGCGAGGG 713
|||.|||||||.|||||.|.|||||||||||||||||||||.||.||.||||||||.|||||||||||||||..
Sbjct 888 GAGAGGGCCAACCAGGCTCTGGTGTCCCAGGAGCTGAAGAAAGCGGCTAAGCGGACTGTGAGCATCAGCGAGAT 961
Query 714 CCCGGACACCCTAGGCGATTGGATGAGGGAGAGAAGGGAGACTCTGGCTCTGGCCCCTG------AGCCAGAGC 781
|||..||||.||||..|||.||| .||.|||| ||||||.|||||||.||.|||| .|||.|||.
Sbjct 962 CCCAAACACTCTAGAAGATGGGA----CGAAAGAA--GAGACTGTGGCTCTAGCTCCTGCCGCTCTGCCTGAGT 1029
Query 782 CCCTGGAGAAGGAAGCTTGTGAGAAGTGGAAGAGGCCCTTCAGGTCTGCCTCAGCCACCTCCCTGACGCTGTCC 855
.|...||||..||..|||||||.||.|||||||||||.||||||||||||||.||||||||||||||.||||||
Sbjct 1030 TCTCAGAGAGTGAGACTTGTGAAAAATGGAAGAGGCCTTTCAGGTCTGCCTCGGCCACCTCCCTGACACTGTCC 1103
Query 856 CACTGTGTGGATGTGGTGAAGGGGCTTCTGGATTTTAAGAAGAGGAGAGGTCACTCAATTGGGGGAGCCCCTGA 929
|.||||||||||||||||||||||||..||||.||.|||||.||.|||||||||||..|||||||.||.|||||
Sbjct 1104 CGCTGTGTGGATGTGGTGAAGGGGCTGTTGGACTTCAAGAAAAGAAGAGGTCACTCGGTTGGGGGCGCACCTGA 1177
Query 930 GCAGCGATACCAGATCATCCCTGTGTGTGTGGCTGCCCGACTTCCTACCCGGGCTCAGGATGTGCTGGATGCCC 1003
||||||.|||||.|.||||||||||||||||.||||||.|.||||..|||.||||||||||||..|||||||||
Sbjct 1178 GCAGCGGTACCAAAGCATCCCTGTGTGTGTGTCTGCCCAAATTCCCTCCCAGGCTCAGGATGTCTTGGATGCCC 1251
Query 1004 ACCTCTCTGAGGTCAATGCTGTTCGTTTTGGCCCCAACAGCAGCCTCCTGGCCACTGGAGGGGCTGACCGCCTG 1077
|.|||||||||||||||||||||.||||||||||||||||||||||||||||||||||||||||||||||.|||
Sbjct 1252 ATCTCTCTGAGGTCAATGCTGTTTGTTTTGGCCCCAACAGCAGCCTCCTGGCCACTGGAGGGGCTGACCGGCTG 1325
Query 1078 ATCCACCTCTGGAATGTTGTGGGAAGTCGCCTGGAGGCCAACCAGACCCTGGAGGGAGCTGGTGGCAGCATCAC 1151
||||||||||||||||||||.|||.||||||||||||||||||||||||||||.||||||||.|||||||||||
Sbjct 1326 ATCCACCTCTGGAATGTTGTAGGAGGTCGCCTGGAGGCCAACCAGACCCTGGAAGGAGCTGGCGGCAGCATCAC 1399
Query 1152 CAGTGTGGACTTTGACCCCTC----------------------------------------------------- 1172
|||||||||.|||||||||||
Sbjct 1400 CAGTGTGGATTTTGACCCCTCAGTAAGGAGACTTTGTCCCACAGCATAGATGTCACTGCAGTCTCCACACTGGG 1473
Query 1173 -------------------------------------------------------------------------- 1172
Sbjct 1474 CAGTGGGCTCCCCTTGGAGCCATGGCTCGCCTCAGTGACAAGGAAGCTTGGAGACAGCCTCTACCCTGGCTCTC 1547
Query 1173 -----------------------------------------------GGGCTACCAGGTTTTAGCAGCAACTTA 1199
|||||.|||||||||.|||||.|||||
Sbjct 1548 TGACCTGATCTAGTGATGTCCAGGGCCTTTCCTTCTCCCTCTCTCCAGGGCTCCCAGGTTTTGGCAGCTACTTA 1621
Query 1200 CAACCAGGCTGCCCAGCTCTGGAAGGTGGGGGAGGCACAGTCCAAGGAGACACTGTCTGGACACAAGGATAAGG 1273
||||||||||||||||||||||||||||||.|||.|.|||||||||||.|||.||||.|||||||||||.||.|
Sbjct 1622 CAACCAGGCTGCCCAGCTCTGGAAGGTGGGAGAGACTCAGTCCAAGGAAACATTGTCCGGACACAAGGACAAAG 1695
Query 1274 TGACAGCTGCCAAATTCAAGCTAACGAGGCACCAGGCAGTGACTGGGAGCCGCGACCGGACAGTGAAGGAGTGG 1347
||||.||||||||||||||||||||.||||||||||||||||||||||||||.|||||||||||||||||||||
Sbjct 1696 TGACTGCTGCCAAATTCAAGCTAACAAGGCACCAGGCAGTGACTGGGAGCCGAGACCGGACAGTGAAGGAGTGG 1769
Query 1348 GACCTCGGCCGTGCCTA-------------------TTGC---------------------------------- 1368
|||||.|||||.||||| ||||
Sbjct 1770 GACCTGGGCCGCGCCTACTGTGAGGCCCAATCCCATTTGCCCCCAGCTCTCAGTCATCGGGGCCCTTACCTTGC 1843
Query 1369 -------------------------------------------------------------------------- 1368
Sbjct 1844 TATGTTGTGGTAGCCGCGGGACTCATATTCATTTGGGCTCAGCCTTCTAATGATTTCCTTCTCTGTCACTGCTG 1917
Query 1369 -------------------------------------TCCAGGACCATCAATGTCCTTTCCTACTGTAATGACG 1405
||||||||.||||||||.|||||||||||.|||||||
Sbjct 1918 CTCCTTTCCTGCTTTCTTGGTAACCCTGGCCTTTGGTTCCAGGACTATCAATGTACTTTCCTACTGCAATGACG 1991
Query 1406 TGGTGTGTGGGGACCATATCATCATTAGTGGCCACAATGACCAGAAGATCCGGTTCTGGGACAGCAG------- 1472
|||||||.||||||||.||||||||.|||||||||||||||||.|||||||||||||||||||||||
Sbjct 1992 TGGTGTGCGGGGACCACATCATCATCAGTGGCCACAATGACCAAAAGATCCGGTTCTGGGACAGCAGGTGATAC 2065
Query 1473 -------------------------------------------------------------------------- 1472
Sbjct 2066 AGGCCTGGGTGGTGGAGGCCACTGAGTCTTCGTTCCTTTCTCTGGCTGTGGGAGGCAGGGTTATGGATAGTATG 2139
Query 1473 -------------------------------------------------------------------------- 1472
Sbjct 2140 GCTGTCAGACAAGCACTGCCAGTGGGTGGCCTCAGCTGGGCATGGTCTTTGAGGGTTCAGCATGTCTGGGAAGC 2213
Query 1473 -------------------------------------------------------------------------- 1472
Sbjct 2214 TGTGCCACCTTCTTAGCGGCTCTTAGTCAGCACTGGACTCCTTCCCAGGCCTTACAGCCAACACAGACAAGCAC 2287
Query 1473 -------------------------------------------------------------------------- 1472
Sbjct 2288 CTTTTTAATATTATCACCACTTTTTCATAAAAAAAAAAACAGCAACAAAAGAATAGCTGCTTTTTAAAGTAATA 2361
Query 1473 -------------------------------------------------------------------------- 1472
Sbjct 2362 AGCCCATCGTTAAGCATGAATGGATGACAAAGGCAGAGCTAGAGCTTTGCAGGTCTCTGCAGCCTCTTTTTGAG 2435
Query 1473 -------------------------------------------------------------------------- 1472
Sbjct 2436 ATTGCTCCTTTGCTAGGGGTTGAACCCAGGGCTTTGTGTCTGCTAGGAGAATGCTCCCAGCCCTTTTTATATTC 2509
Query 1473 -------------------------------------------------------------------------- 1472
Sbjct 2510 TTATTTTGAGACAGAATCTCAATAAAGTTTTCCAGGATGGTCTTGAACTTAGGATCTTATGATTCTCCGACCTC 2583
Query 1473 -------------------------------------------------------------------------- 1472
Sbjct 2584 AGCTGTGACTACCTGCCAGTGTCACCCTATCTGGCTATCACTGTTACTCTTTAGTGATCCAACTGTCTAATCCA 2657
Query 1473 -------------------------------------------------------------------------- 1472
Sbjct 2658 CAGTGGGAAGGGGCAGTAGTTTTGTCAGCCTTAGCCCCAGTGATTCACGCCCTGGGTTTCTCGAGACTATGTTA 2731
Query 1473 -------------------------------------------------------------------------- 1472
Sbjct 2732 CCTGGGAATGTGGCCACATACAGCCTGTCCAAAGTGTCTAAGGATGTCTCTTCCGCGTCCCTCTCCATCCCTAA 2805
Query 1473 -------GGGGCCC-CACTGCACCCAGGTCATCCCTGTGCAGGGCCGGGTCACCTCCCTGAGCCTCAGCCACGA 1538
||||||| |||||||.||||||||||||.||||||||||||||.|||||||||..|||||||.|.||
Sbjct 2806 CCCCACAGGGGCCCTCACTGCATCCAGGTCATCCCCGTGCAGGGCCGGGTTACCTCCCTGCACCTCAGCTATGA 2879
Query 1539 CCAACTGCACCTGCTCAGCTGTTCCCGAGACAACACACTCAAGGTCATCGACCTGCGTGTCAGCAACATCCGCC 1612
|||.|||||.|||||.|||||||||||||||||||||||||||||.|||||||||||..|||||||.|||||.|
Sbjct 2880 CCAGCTGCATCTGCTTAGCTGTTCCCGAGACAACACACTCAAGGTTATCGACCTGCGAATCAGCAATATCCGAC 2953
Query 1613 AGGTGTTCAGGGCCGATGGCTTCAAGTGTGGTTCTGACTGGACCAAAGCTGTGTT------------------- 1667
|||||||||||||.||||||||||||||..|||||||||||||||||||||||||
Sbjct 2954 AGGTGTTCAGGGCAGATGGCTTCAAGTGCAGTTCTGACTGGACCAAAGCTGTGTTCAGGTGCGTCTGGGAGGTC 3027
Query 1668 ------------------------------------------------------------------------CA 1669
||
Sbjct 3028 ATGCCTATACATAGGCCTGTGTTTGTGTGCCTACACTTCTGATCTTCTCCTCTTGTTCTGCTGTGACCTGTACA 3101
Query 1670 GCCCGGACAGAAGCTATGCACTGGCAGGCTCCTGTGATGGGGCCCTTTACATCTGGGATGTGGACACCGGGAAA 1743
||||.||||||||||||||||||||||||||.|...|.||.|.|||.|||||||||||||||.|||||||||||
Sbjct 3102 GCCCTGACAGAAGCTATGCACTGGCAGGCTCTTCAAACGGCGACCTGTACATCTGGGATGTGAACACCGGGAAA 3175
Query 1744 CTGGAGAGCAGACTACAGGGACCCCATT---------------------------------------------- 1771
|||||||.|||.||||||||||||||.|
Sbjct 3176 CTGGAGACCAGCCTACAGGGACCCCACTGAGGCTTCTCAAACCGCCTGCTGGTTGGATGTCCAGGGTCAGAGTA 3249
Query 1772 ---------------------------------------------------GCGCTGCCGTCAACGCCGTGGCC 1794
||.||||.||.||.||||||||.
Sbjct 3250 AGGCTGCCTGCCTGCTCCTGCTGCCCTCCTGAGGTCTGTCTTCCCTCTTCAGCACTGCTGTTAATGCCGTGGCT 3323
Query 1795 TGGTGCTACTCCGGGAGCCACATGGTGAGCGTGGACCAGGGCAGGAAGGTTGTGCTCTGGCAG----------- 1857
|||||||.||||||||.||||.|.|||||.||||||||.|||||||||||.|||||||||||.
Sbjct 3324 TGGTGCTTCTCCGGGAACCACGTTGTGAGTGTGGACCAAGGCAGGAAGGTGGTGCTCTGGCACTGAGTGGCACA 3397
Query 1858 -------------------------------------------------------------------------- 1857
Sbjct 3398 AGTTCCCTGTATGGGTTGGACTCTGAAGCCAGAAGCCAGAGAACAGCTTCCCTGTGCTCAGGACTCCAGAGCTG 3471
Query 1858 -------------------------------------------------------------------------- 1857
Sbjct 3472 GGGTTGGGGTCTACTACAGAATTCATGTGAGGGCCAGGCAGGACCTGGCCTGTTTGTTAAAAATCAAAGTGTGG 3545
Query 1858 -------------------------------------------------------------------------- 1857
Sbjct 3546 GTTAGGAACTACAGTTTTGTTTTTTAAAATCTATTTGTTTACTCTCTTCAGTGTTAAAAACTGTATCTAAGCCG 3619
Query 1858 -- 1857
Sbjct 3620 TG 3621
