Nucleotide Global Alignment
Description
- Query:
- TRCN0000477269
- Subject:
- XR_378274.3
- Aligned Length:
- 2346
- Identities:
- 1582
- Gaps:
- 501
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GGAGGCTTCAATCCCTGCTGCTTACTCCGGGACAGAAACGCACACCTCTGGGACTGAGGGTTTTTGCTGGGCCG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CAGCAGCACCTGCTTTGAGGTGTCCAGATCTCCCCGACAAAAGCGCTTGGTACAGCCCGGGGATTCCCCGCTGC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 TGCCGCCCTGACGTCATGGAGTCCCCGGGAGGCTCCGCCCCCCTGCTCGGGCTGGAGCTTTGCGCGGCCGCTAG 222
Query 1 -------------ATGGCGGGGCCGGGCGTC---------CCCGGTGCCCCCGCAGCGCGCTGGAAACGCCACA 52
|||||.||.||.||||.| |||.|.||.|||||.||...||||||.|||||||
Sbjct 223 GGACTCGGCGGCCATGGCAGGACCTGGCGCCCCCTGCGATCCCTGCGCGCCCGCCGCTGTCTGGAAGCGCCACA 296
Query 53 TCGTGCGGCAGCTGCGGCTTCGGGACCGTACGCAAAAGGCGCTTTTCCTGGAGCTGGTGCCGGCCTATAACCAT 126
||||||||||||||||||.|||||||||.||||||||||||||.|||||||||||.||||||||.|||||||||
Sbjct 297 TCGTGCGGCAGCTGCGGCATCGGGACCGCACGCAAAAGGCGCTCTTCCTGGAGCTAGTGCCGGCTTATAACCAT 370
Query 127 CTCTTAGAGAAGGCTGAGCTGCTGGACAAGTTCTCAAAGAAGCTGCAGCCGGAGCCAAACAGTGTCACTC-CCA 199
|||.|||||||||||||.|||||.|.||||||||||.|.|||.||.||.|.||.|||||...||.|| || |||
Sbjct 371 CTCCTAGAGAAGGCTGAACTGCTAGCCAAGTTCTCAGAAAAGTTGAAGTCCGAACCAAAGGATGCCA-TCTCCA 443
Query 200 CCACCCACCAGGGCCCCTGGGAGGAG---TCAGAGCTTGACTCAGACCAAGTCCCATCACTGGTCGCACTGAGG 270
||...||..|||.|....|||||||| ||||.|...|.|.|.|||||||||.||||||..|.|.|.||||||
Sbjct 444 CCCGACATGAGGACTGGAGGGAGGAGGTCTCAGGGACAGGCCCTGACCAAGTCTCATCACCAGCCTCTCTGAGG 517
Query 271 GTGAAGTGGCAGGAGGAGGAGGAGGGGCTCCGGCTGGTCTGTGGTGAGATGGCCTACCAGGTGGTGGAGAAGGG 344
||||||||||||.|||||.||.|||||||.|.||||||||||||||||||||||||||||||||||.|||||.|
Sbjct 518 GTGAAGTGGCAGCAGGAGAAGAAGGGGCTGCAGCTGGTCTGTGGTGAGATGGCCTACCAGGTGGTGAAGAAGAG 591
Query 345 CGCGGCCCTGGGCACGCTGGAGTCGGAGCTGCAGCAGAGGCAAAGCAGGCTGGCAGCCCTGGAGGCCCGCGTGG 418
|||.|||||.|.|||.|||.||||..|||||.||.||.||||...||||.|||.|||||||.|||||.||||||
Sbjct 592 CGCAGCCCTAGACACCCTGCAGTCACAGCTGGAGGAGCGGCAGGACAGGTTGGAAGCCCTGCAGGCCTGCGTGG 665
Query 419 CGCAGCTGCGAGAGGCGCGGGCGCAGCAGGCCCAGCAGGTGGAGGAGTGGCGGGCGCAGAATGCGGTGCAGCGG 492
.||||||.|..|||||||||||.||||||.|||.||||.|||||||..|||..|||.||||.||.|..|||.|.
Sbjct 666 TGCAGCTACAGGAGGCGCGGGCTCAGCAGTCCCGGCAGCTGGAGGAACGGCAAGCGGAGAACGCAGCACAGAGA 739
Query 493 GCAGCCTACGAGGCGCTGCGCGCGCACGTCGGGCTCCGGGAGGCGGCACTGCGCAGGCTCCAGGAAGAGGCGCG 566
|.||||||.|||.||||||.|..|||.|..|.||.||.|||||||||||||||||||||||||||||||||.||
Sbjct 740 GAAGCCTATGAGACGCTGCTCCAGCAAGCTGTGCACCAGGAGGCGGCACTGCGCAGGCTCCAGGAAGAGGCACG 813
Query 567 CGACCTGCTGGAGAGGCTCGTGCAGCGCAAGGCGCGCGCCGCGGCCGAGCGCAACCTGCGCAACGAGCGCCGGG 640
||||.||||||||..|||.||||||||.||||||||||||||.||.||||||||.||.||.||.|||||..|.|
Sbjct 814 CGACTTGCTGGAGCAGCTTGTGCAGCGTAAGGCGCGCGCCGCCGCTGAGCGCAATCTACGTAATGAGCGTAGAG 887
Query 641 AGCGGGCCAAGCAGGCGCGGGTGTCCCAGGAGCTGAAGAAGGCTGCCAAGCGGACCGTGAGCATCAGCGAGGGC 714
||.|||||||.|||||.|.|||||||||||||||||||||.||.||.||||||||.|||||||||||||||..|
Sbjct 888 AGAGGGCCAACCAGGCTCTGGTGTCCCAGGAGCTGAAGAAAGCGGCTAAGCGGACTGTGAGCATCAGCGAGATC 961
Query 715 CCGGACACCCTAGGCGATTGGATGAGGGAGAGAAGGGAGACTCTGGCTCTGGCCCCTG------AGCCAGAGCC 782
||..||||.||||..|||.||| .||.|||| ||||||.|||||||.||.|||| .|||.|||..
Sbjct 962 CCAAACACTCTAGAAGATGGGA----CGAAAGAA--GAGACTGTGGCTCTAGCTCCTGCCGCTCTGCCTGAGTT 1029
Query 783 CCTGGAGAAGGAAGCTTGTGAGAAGTGGAAGAGGCCCTTCAGGTCTGCCTCAGCCACCTCCCTGACGCTGTCCC 856
|...||||..||..|||||||.||.|||||||||||.||||||||||||||.||||||||||||||.|||||||
Sbjct 1030 CTCAGAGAGTGAGACTTGTGAAAAATGGAAGAGGCCTTTCAGGTCTGCCTCGGCCACCTCCCTGACACTGTCCC 1103
Query 857 ACTGTGTGGATGTGGTGAAGGGGCTTCTGGATTTTAAGAAGAGGAGAGGTCACTCAATTGGGGGAGCCCCTGAG 930
.||||||||||||||||||||||||..||||.||.|||||.||.|||||||||||..|||||||.||.||||||
Sbjct 1104 GCTGTGTGGATGTGGTGAAGGGGCTGTTGGACTTCAAGAAAAGAAGAGGTCACTCGGTTGGGGGCGCACCTGAG 1177
Query 931 CAGCGATACCAGATCATCCCTGTGTGTGTGGCTGCCCGACTTCCTACCCGGGCTCAGGATGTGCTGGATGCCCA 1004
|||||.|||||.|.||||||||||||||||.||||||.|.||||..|||.||||||||||||..||||||||||
Sbjct 1178 CAGCGGTACCAAAGCATCCCTGTGTGTGTGTCTGCCCAAATTCCCTCCCAGGCTCAGGATGTCTTGGATGCCCA 1251
Query 1005 CCTCTCTGAGGTCAATGCTGTTCGTTTTGGCCCCAACAGCAGCCTCCTGGCCACTGGAGGGGCTGACCGCCTGA 1078
.|||||||||||||||||||||.||||||||||||||||||||||||||||||||||||||||||||||.||||
Sbjct 1252 TCTCTCTGAGGTCAATGCTGTTTGTTTTGGCCCCAACAGCAGCCTCCTGGCCACTGGAGGGGCTGACCGGCTGA 1325
Query 1079 TCCACCTCTGGAATGTTGTGGGAAGTCGCCTGGAGGCCAACCAGACCCTGGAGGGAGCTGGTGGCAGCATCACC 1152
|||||||||||||||||||.|||.||||||||||||||||||||||||||||.||||||||.||||||||||||
Sbjct 1326 TCCACCTCTGGAATGTTGTAGGAGGTCGCCTGGAGGCCAACCAGACCCTGGAAGGAGCTGGCGGCAGCATCACC 1399
Query 1153 AGTGTGGACTTTGACCCCTCGGGCTACCAGGTTTTAGCAGCAACTTACAACCAGGCTGCCCAGCTCTGGAAGGT 1226
||||||||.|||||||||||.||||.|||||||||.|||||.||||||||||||||||||||||||||||||||
Sbjct 1400 AGTGTGGATTTTGACCCCTCAGGCTCCCAGGTTTTGGCAGCTACTTACAACCAGGCTGCCCAGCTCTGGAAGGT 1473
Query 1227 GGGGGAGGCACAGTCCAAGGAGACACTGTCTGGACACAAGGATAAGGTGACAGCTGCCAAATTCAAGCTAACGA 1300
|||.|||.|.|||||||||||.|||.||||.|||||||||||.||.|||||.||||||||||||||||||||.|
Sbjct 1474 GGGAGAGACTCAGTCCAAGGAAACATTGTCCGGACACAAGGACAAAGTGACTGCTGCCAAATTCAAGCTAACAA 1547
Query 1301 GGCACCAGGCAGTGACTGGGAGCCGCGACCGGACAGTGAAGGAGTGGGACCTCGGCCGTGCCTATTGCTCCAGG 1374
|||||||||||||||||||||||||.||||||||||||||||||||||||||.|||||.|||||.||.||||||
Sbjct 1548 GGCACCAGGCAGTGACTGGGAGCCGAGACCGGACAGTGAAGGAGTGGGACCTGGGCCGCGCCTACTGTTCCAGG 1621
Query 1375 ACCATCAATGTCCTTTCCTACTGTAATGACGTGGTGTGTGGGGACCATATCATCATTAGTGGCCACAATGACCA 1448
||.||||||||.|||||||||||.||||||||||||||.||||||||.||||||||.|||||||||||||||||
Sbjct 1622 ACTATCAATGTACTTTCCTACTGCAATGACGTGGTGTGCGGGGACCACATCATCATCAGTGGCCACAATGACCA 1695
Query 1449 GAAGATCCGGTTCTGGGACAGCAGGGGGCCCCACTGCACCCAGGTCATCCCTGTGCAGGGCCGGGTCACCTCCC 1522
.||||||||||||||||||||||||||.||.|||||||.||||||||||||.||||||||||||||.|||||||
Sbjct 1696 AAAGATCCGGTTCTGGGACAGCAGGGGCCCTCACTGCATCCAGGTCATCCCCGTGCAGGGCCGGGTTACCTCCC 1769
Query 1523 TGAGCCTCAGCCACGACCAACTGCACCTGCTCAGCTGTTCCCGAGACAACACACTCAAGGTCATCGACCTGCGT 1596
||..|||||||.|.|||||.|||||.|||||.|||||||||||||||||||||||||||||.|||||||||||.
Sbjct 1770 TGCACCTCAGCTATGACCAGCTGCATCTGCTTAGCTGTTCCCGAGACAACACACTCAAGGTTATCGACCTGCGA 1843
Query 1597 GTCAGCAACATCCGCCAGGTGTTCAGGGCCGATGGCTTCAAGTGTGGTTCTGACTGGACCAAAGCTGTGTTCAG 1670
.|||||||.|||||.|||||||||| ||||||||||||||..||||||||||||||||||||||||||||
Sbjct 1844 ATCAGCAATATCCGACAGGTGTTCA-----GATGGCTTCAAGTGCAGTTCTGACTGGACCAAAGCTGTGTTCAG 1912
Query 1671 CCCGGACAGAAGCTATGCACTGGCAGGCTCCTGTGATGGGGCCCTTTACATCTGGGATGTGGACACCGGGAAAC 1744
|||.||||||||||||||||||||||||||.|...|.||.|.|||.|||||||||||||||.||||||||||||
Sbjct 1913 CCCTGACAGAAGCTATGCACTGGCAGGCTCTTCAAACGGCGACCTGTACATCTGGGATGTGAACACCGGGAAAC 1986
Query 1745 TGGAGAGCAGACTACAGGGACCCCATTGCGCTGCCGTCAACGCCGTGGCCTGGTGCTACTCCGGGAGCCACATG 1818
||||||.|||.||||||||||||||.|||.||||.||.||.||||||||.|||||||.||||||||.||||.|.
Sbjct 1987 TGGAGACCAGCCTACAGGGACCCCACTGCACTGCTGTTAATGCCGTGGCTTGGTGCTTCTCCGGGAACCACGTT 2060
Query 1819 GTGAGCGTGGACCAGGGCAGGAAGGTTGTGCTCTGGCAG----------------------------------- 1857
|||||.||||||||.|||||||||||.|||||||||||.
Sbjct 2061 GTGAGTGTGGACCAAGGCAGGAAGGTGGTGCTCTGGCACTGAGTGGCACAAGTTCCCTGTATGGGTTGGACTCT 2134
Query 1858 -------------------------------------------------------------------------- 1857
Sbjct 2135 GAAGCCAGAAGCCAGAGAACAGCTTCCCTGTGCTCAGGACTCCAGAGCTGGGGTTGGGGTCTACTACAGAATTC 2208
Query 1858 -------------------------------------------------------------------------- 1857
Sbjct 2209 ATGTGAGGGCCAGGCAGGACCTGGCCTGTTTGTTAAAAATCAAAGTGTGGGTTAGGAACTACAGTTTTGTTTTT 2282
Query 1858 ---------------------------------------------------- 1857
Sbjct 2283 TAAAATCTATTTGTTTACTCTCTTCAGTGTTAAAAACTGTATCTAAGCCGTG 2334
