Nucleotide Global Alignment
Description
- Query:
- TRCN0000477550
- Subject:
- XR_001781792.1
- Aligned Length:
- 3374
- Identities:
- 1373
- Gaps:
- 1797
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GTGCACTGGCCTCCAGGCGTGGTCACGACTCCCCGGGCCTCTCAAGGGTTAAGAGGAAAGCTTTGGGCTGACGT 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CGCTCTGGCCGAAGGTGGTTCCCCTAGCTGAGGGTGGGAGAGCCCGGCGGGCTGAAACCCGAGCTCTGTTTCAG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CTGGAGCTTGGGGAGGTCCCGGCAAGAGCAGAGCCCGCTGCCCTGTTCTCGCCTAGGCATCCCTCCAGTCACTC 222
Query 1 ---------------------------------------ATGGAGCTGGGTTGCTGGACGCAGTTGGGGCTCAC 35
||||||||.|...|.|||.|||||||||||||...
Sbjct 223 CCCTCCAGTCACTCGGTACCGACACAGCAACGGGAAACGATGGAGCTAGACAGATGGGCGCAGTTGGGGCTGGT 296
Query 36 TTTTCTTCAGCTCCTTCTCATCTCGTCCTTGCCAAGAGAGTACACAGTCATTAATGAAGCCTGCCCTGGAGCAG 109
.||.||.|||||||||||||||||.||.|||||||||||||||||.|||||||||||||||||.||.|||||.|
Sbjct 297 GTTCCTGCAGCTCCTTCTCATCTCATCGTTGCCAAGAGAGTACACGGTCATTAATGAAGCCTGTCCCGGAGCTG 370
Query 110 AGTGGAATATCATGTGTCGGGAGTGCTGTGAATATGATCAGATTGAGTGCGTCTGCCCCGGAAAGAGGGAAGTC 183
|||||||.|||||||||.|.||.||.||||||||||||||||||||.|||.|||||||.|||||||.||||||.
Sbjct 371 AGTGGAACATCATGTGTAGAGAATGTTGTGAATATGATCAGATTGAATGCCTCTGCCCAGGAAAGAAGGAAGTG 444
Query 184 GTGGGTTATACCATCCCTTGCTGCAGGAATGAGGAGAATGAGTGTGACTCCTGCCTGATCCACCCAGGTTGTAC 257
||||||||.||||||||.|||||||||||||||||.|||||.|||||||||||.||.||.||||||||||||||
Sbjct 445 GTGGGTTACACCATCCCATGCTGCAGGAATGAGGATAATGAATGTGACTCCTGTCTAATTCACCCAGGTTGTAC 518
Query 258 CATCTTTGAAAACTGCAAGAGCTGCCGAAATGGCTCATGGGGGGGTACCTTGGATGACTTCTATGTGAAGGGGT 331
|||||||||||||||||||||||||||.||||||||.|||||.||.||..|||||||||||||.||||||||.|
Sbjct 519 CATCTTTGAAAACTGCAAGAGCTGCCGCAATGGCTCCTGGGGCGGAACTCTGGATGACTTCTACGTGAAGGGAT 592
Query 332 TCTACTGTGCAGAGTGCCGAGCAGGCTGGTACGGAGGAGACTGCATGCGATGTGGCCAGGTTCTGCGAGCCCCA 405
|||||||.|||||||||.|.||||||||||||||||||||||||||||||||||||||||||||.||||||.||
Sbjct 593 TCTACTGCGCAGAGTGCAGGGCAGGCTGGTACGGAGGAGACTGCATGCGATGTGGCCAGGTTCTTCGAGCCTCA 666
Query 406 AAGGGTCAGATTTTGTTGGAAAGCTATCCCCTAAATGCTCACTGTGAATGGACCATTCATGCTAAACCTGGGTT 479
|||||||||||.||||||||.|||||||||.||||.|||||||||||||||||.||||||||.|.|||||||||
Sbjct 667 AAGGGTCAGATCTTGTTGGAGAGCTATCCCTTAAACGCTCACTGTGAATGGACTATTCATGCCAGACCTGGGTT 740
Query 480 TGTCATCCAACTAAGATTTGTCATGTTGAGCCTGGAGTTTGACTACATGTGCCAGTATGACTATGTTGAGGTTC 553
|.|||||||..|.||.||||..|||.|||||||.||||||||||||||||||||.|||||||||||.|||||.|
Sbjct 741 TATCATCCAGTTGAGGTTTGGTATGCTGAGCCTAGAGTTTGACTACATGTGCCAATATGACTATGTGGAGGTCC 814
Query 554 GTGATGGAGACAACCGCGATGGCCAGATCATCAAGCGTGTCTGTGGCAACGAGCGGCCAGCTCCTATCCAGAGC 627
|.|||||.||.||..|.||..|||..||||||||||||.||||||||||||||.||||||||||.|||..||||
Sbjct 815 GCGATGGGGATAATAGTGACAGCCCTATCATCAAGCGTTTCTGTGGCAACGAGAGGCCAGCTCCCATCAGGAGC 888
Query 628 ATAGGATCCTCACTCCACGTCCTCTTCCACTCCGATGGCTCCAAGAATTTTGACGGTTTCCATGCCATTTATGA 701
|..||.||.||||||||.|||||.|||||.||.||||||||||||||.||.||.||.|||||.||..|.|.|||
Sbjct 889 ACTGGCTCTTCACTCCATGTCCTTTTCCATTCTGATGGCTCCAAGAACTTCGATGGCTTCCACGCTGTCTTTGA 962
Query 702 GGAGATCACAGCATGCTCCTCATCCCCTTGTTTCCATGACGGCACGTGCGTCCTTGACAAGGCTGGATCTTACA 775
||||||||||||.||||||||||||||||||||||||||.|||||.|||.|||||||||...||||.||||.||
Sbjct 963 GGAGATCACAGCGTGCTCCTCATCCCCTTGTTTCCATGATGGCACATGCCTCCTTGACACCACTGGGTCTTTCA 1036
Query 776 AGTGTGCCTGCTTGGCAGGCTATACTGGGCAGCGCTGTGAAAATCTTCTGGAGGCTGGGAAGTCCAAGATCAAG 849
|||||||||||.||||.|||||.||||||||||||||||||||||
Sbjct 1037 AGTGTGCCTGCCTGGCTGGCTACACTGGGCAGCGCTGTGAAAATC----------------------------- 1081
Query 850 GCGTCAGAAGATTCATTGTCTGTCCTTGAAGAAAGAAACTGCTCAGACCCTGGGGGCCCAGTCAATGGGTACCA 923
|.|||||||||||||||||||||||||.||||||.|||||||||||||||.|
Sbjct 1082 ----------------------TACTTGAAGAAAGAAACTGCTCAGACCTTGGGGGGCCAGTCAATGGGTACAA 1133
Query 924 GAAAATAACAGGGGGCCCTGGGCTTATCAACGGACGCCATGCTAAAATTGGCACCGTGGTGTCTTTCTTTTGTA 997
||||||.||||..||.|||||.|||.||||.|..|||||||..|||||||||||.||.||||||||||||||||
Sbjct 1134 GAAAATCACAGAAGGTCCTGGACTTCTCAATGAGCGCCATGTAAAAATTGGCACGGTTGTGTCTTTCTTTTGTA 1207
Query 998 ACAACTCCTATGTTCTTAGTGGCAATGAGAAAAGAACTTGCCAGCAGAATGGAGAGTGGTCAG----------- 1060
||..|||.||.|||||.|||||||||||||||.||||||||||||||||||||||||||||||
Sbjct 1208 ACGGCTCATACGTTCTGAGTGGCAATGAGAAACGAACTTGCCAGCAGAATGGAGAGTGGTCAGGAAAGCAACCT 1281
Query 1061 -------------------------------------------------------------------------- 1060
Sbjct 1282 GTCTGCATGAAAGATAGATGCCTTCTTTACTGAGAAGAAGTGTGTGCTCATGTCCTAGATTGTCAAGACCATTG 1355
Query 1061 -------------------------------------------------------------------------- 1060
Sbjct 1356 CCCCTACCCATCACCCTCTCTGCTGGGTGTTTGTCAACAACCTGAACCACGGGGAAAGGAATGAAAGAGAAAAA 1429
Query 1061 -------------------------------------------------------------------------- 1060
Sbjct 1430 AGGATCAATGTGAAAGGGAGAAATCACTTTAGACTTTTGCCAGAAGCTACTTTCCTCCTCCCAGCACAAGGCCT 1503
Query 1061 -------------------------------------------------------------------------- 1060
Sbjct 1504 GAGGTTTTATTTCATTAAGTATGGGAACGGTGTTGCATATGTCCTTGGAGGGTTTTTTGTCAACTTTCCTCTTA 1577
Query 1061 -------------------------------------------------------------------------- 1060
Sbjct 1578 CAAATTAATACAACCAAAGTACTCTAAGTTGCTAATTAGACAAATGTTGGCTGCTAGATTGGGAAAGAGAGATG 1651
Query 1061 -------------------------------------------------------------------------- 1060
Sbjct 1652 GGAAGGATTCGTTTTCCCTGGAAGAAAAAAAGAAAGATTTCAGTGAATTGAAACTGGGCTCTGAGTTGTCCTCT 1725
Query 1061 -------------------------------------------------------------------------- 1060
Sbjct 1726 GGTGACTGCTAGGGACCTTCATTGCAGAGACAGGACAAGGAATGACTGGTTACTCAAGACTTATTTATAATTGG 1799
Query 1061 -------------------------------------------------------------------------- 1060
Sbjct 1800 CACTGCCGTCTGGTTTGAAACAAGGACTCCCTAATTCCCTCTGTGGGCTCTATTTTGGAGCCTTCACTTTGAGT 1873
Query 1061 -------------------------------------------------------------------------- 1060
Sbjct 1874 TTTATTCCACTATGATCTAGTTTGCTGACACCATTCCCATGAACAGATGGCCCTAATCTATTAACTGCCACTGT 1947
Query 1061 --------------------------------GGAAACAGC--------------------------------- 1069
|||.|||||
Sbjct 1948 CCCAAGTCTCCTCAGAAGAACAGTTTTTCAGAGGAGACAGCTGAGTTCTATAGTAGCAGCTCCCAGGGGAAAAG 2021
Query 1070 ------CCATC------------------------------------------------------------TGC 1077
||||| |||
Sbjct 2022 CAGCTGCCATCTTGCTAAGTACGCTGTTGAAGCTTTTCTAACCCATGCAGCCCCAGAGACCTGTGAATGATTGC 2095
Query 1078 AT---------------------------------------------------------------AAA------ 1082
|| |||
Sbjct 2096 ATGGTGTCTGGAAGGGTGGGAGTCAGGTGTTATTCTGGGTGTCGTGATGTGACCAGTAAGGTCGGAAAAGCATC 2169
Query 1083 ------------------------AGCCTGCCGAGAACCAAAGATTTCAGACCTGGTGAGAAGGAGAGTTCTTC 1132
|||||||||.|||||.|||||.|||||||||||||||||||||||.|||.
Sbjct 2170 ACACAGCTTGGCTTATCTGTTTCTAGCCTGCCGGGAACCGAAGATCTCAGACCTGGTGAGAAGGAGAGTCCTTT 2243
Query 1133 CGATGCAGGTTCAGTCAAGGGAGACACCATTACACCAGCTATACTCAGCGGCCTTCAGCAAGCAGAAACTGCAG 1206
||||||||||||||||||||||||||||||||||.|||||.||.||..||||.|||||||||||||||.|||||
Sbjct 2244 CGATGCAGGTTCAGTCAAGGGAGACACCATTACATCAGCTTTATTCCACGGCTTTCAGCAAGCAGAAATTGCAG 2317
Query 1207 AGTGCCCCTACCAAGAAGCCAGCCCTTCCCTTTGGAGATCTGCCCATGGGATACCAACATCTGCATACCCAGCT 1280
..||||.|||||||.||||||||||||||.||||||||.||||||...|||||||||||||||||.|||||..|
Sbjct 2318 GATGCCTCTACCAAAAAGCCAGCCCTTCCATTTGGAGACCTGCCCCCTGGATACCAACATCTGCACACCCAAGT 2391
Query 1281 CCAGTATGAGTGCATCTCACCCTTCTACCGCCGCCTGGGCAGCAGCAGGAGGACATGTCTGAGGACTGGGAAGT 1354
||||||||||||||||||.||||||||||||||||||||.|||||||||||||||||.|||||.||||||||||
Sbjct 2392 CCAGTATGAGTGCATCTCGCCCTTCTACCGCCGCCTGGGAAGCAGCAGGAGGACATGCCTGAGAACTGGGAAGT 2465
Query 1355 GGAGTGGGCGGGCACCATCCTGCATCCCTATCTGCGGGAAAATTGAGAACA-TCACTGCTCCAAAGACCCAAGG 1427
|||||||||||||.||.|||||.|||||.|||||.||.|||||.||||.|| || ||.||||||||||||||||
Sbjct 2466 GGAGTGGGCGGGCCCCGTCCTGTATCCCAATCTGTGGAAAAATCGAGAGCACTC-CTTCTCCAAAGACCCAAGG 2538
Query 1428 GTTGCGCTGGCCGTGGCAGGCAGCCATCTACAGGAGGACCAGCGGGGTGCATGACGGCAGCCTACACAAGGGAG 1501
....||||||||.||||||||||||||||||.||||||||||.||.||.||.||.||..|.||.|||||.||.|
Sbjct 2539 CACCCGCTGGCCATGGCAGGCAGCCATCTACCGGAGGACCAGTGGTGTACACGATGGTGGTCTGCACAAAGGTG 2612
Query 1502 CGTGGTTCCTAGTCTGCAGCGGTGCCCTGGTGAATGAGCGCACTGTGGTGGTGGCTGCCCACTGTGTTACTGAC 1575
|.||||||.|.||||||||.|||||||||||||||||.||.||||||||.|||||||||||||||||.|||||.
Sbjct 2613 CATGGTTCTTGGTCTGCAGTGGTGCCCTGGTGAATGAACGGACTGTGGTTGTGGCTGCCCACTGTGTGACTGAG 2686
Query 1576 CTGGGGAAGGTCACCATGATCAAGACAGCAGACCTGAAAGTTGTTTTGGGGAAATTCTACCGGGATGATGACCG 1649
||||||||||.||||||.|||||||||||||||||.||.|||||.|||||.|||
Sbjct 2687 CTGGGGAAGGCCACCATCATCAAGACAGCAGACCTCAAGGTTGTCTTGGGAAAA-------------------- 2740
Query 1650 GGATGAGAAGACCATCCAGAGCCTACAGATTTCTGCTATCATTCTGCATCCCAACTATGACCCCATCCTGCTTG 1723
Sbjct 2741 -------------------------------------------------------------------------- 2740
Query 1724 ATGCTGACATCGCCATCCTGAAGCTCCTAGACAAGGCCCGTATCAGCACCCGAGTCCAGCCCATCTGCCTCGCT 1797
Sbjct 2741 -------------------------------------------------------------------------- 2740
Query 1798 GCCAGTCGGGATCTCAGCACTTCCTTCCAGGAGTCCCACATCACTGTGGCTGGCTGGAATGTCCTGGCAGACGT 1871
Sbjct 2741 -------------------------------------------------------------------------- 2740
Query 1872 GAGGAGCCCTGGCTTCAAGAACGACACACTGCGCTCTGGGGTGGTCAGTGTGGTGGACTCGCTGCTGTGTGAGG 1945
Sbjct 2741 -------------------------------------------------------------------------- 2740
Query 1946 AGCAGCATGAGGACCATGGCATCCCAGTGAGTGTCACTGATAACATGTTCTGTGCCAGCTGGGAACCCACTGCC 2019
Sbjct 2741 -------------------------------------------------------------------------- 2740
Query 2020 CCTTCTGATATCTGCACTGCAGAGACAGGAGGCATCGCGGCTGTGTCCTTCCCGGGACGAGCATCTCCTGAGCC 2093
Sbjct 2741 -------------------------------------------------------------------------- 2740
Query 2094 ACGCTGGCATCTGATGGGACTGGTCAGCTGGAGCTATGATAAAACATGCAGCCACAGGCTCTCCACTGCCTTCA 2167
Sbjct 2741 -------------------------------------------------------------------------- 2740
Query 2168 CCAAGGTGCTGCCTTTTAAAGACTGGATTGAAAGAAATATGAAA 2211
Sbjct 2741 -------------------------------------------- 2740
