Nucleotide Global Alignment
Description
- Query:
- TRCN0000477691
- Subject:
- NR_028395.1
- Aligned Length:
- 3670
- Identities:
- 2155
- Gaps:
- 1390
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ACGTGAGAGGAGACTTCCGGCCACTGCGTTGTAGTCGGCCCGGCTGCAAAGCGTTTTTCTGCAGGCTGTTTTCC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CAGGTTCCCTCGGCCTGTACCTCGCGCACTCCTCTTGCTCCAGGTCCTTCAGTCTCCGCTCGTCTCACCGTAGG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CTGTGACGACATGAGCAACAAAGAAGGATCAGGAGGGTTCAGGAAAAGGAAGCATGACAATTTCCCACATAACC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 AAAGAAGAGAAGGGAAGGATGTTAATTCATCTTCACCCGTGATGTTGGCCTTTAAATCATTTCAGCAGGAACTT 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 GATGCAAGGCATGACAAATATGAGAGACTTGTGAAACTTAGTCGGGATATAACTGTTGAAAGTAAAAGGACAAT 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 TTTTCTCCTCCATAGGATTACAAGTGCTCCTGATATGGAAGATATATTGACTGAATCAGAAATTAAATTGGATG 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 GTGTCAGACAAAAGATATTCCAGGTAGCCCAAGAGCTATCAGGGGAAGATATGCATCAGTTCCATCGAGCCATT 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 ACTACAGGACTACAGGAATATGTGGAAGCTGTCTCTTTTCAACACTTCATCAAAACACGATCATTAATTAGTAT 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 GGATGAAATTAATAAACAATTGATATTTACGACTGAAGACAATGGGAAAGAAAATAAAACTAAGTTTACAGGCA 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 AGATCCTACTCACAGAGGCTCTTGGGATCAAGGCTGACAGAAGCTCCATCTGAAGACTTTTATACTATAGAGGC 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 AGAAAAAGAGTGATGAATCAAGCACTGGCTTCTAAAGCTTCCGCCCAGATGGGAAGCATATCTCCTCTGCTCAC 814
Query 1 -------------ATGCCAGGC----GGGGGTCCTCAGGGCGCCCCAGCCGCCGCCGGCGGCGGCGGC------ 51
|.|||||.| ||...|||||| ||..||| ...||..|.|..|||
Sbjct 815 ATTTCCCTGACCAAAGCCAGTCACATGGCCATCCTCA----GCTTCAG-----AGAGGTTGGGAAGGCATTCCC 879
Query 52 -----GTG------AGCCACCGCGCA--------------GGCAGCCGGGATTGCTTACCACCTGCAGCGTGCT 100
||| .|||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 880 ACTATGTGTCTGGATGCCA----GCAACTCAGAAATATTTGGCAGCCGGGATTGCTTACCACCTGCAGCGTGCT 949
Query 101 TTCGGAGGCGGCGGCTGGCACGGAGGCCGGGCTACATGAGAAGCTCGACAGGGCCTGGGATCGGGTTCCTTTCC 174
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 950 TTCGGAGGCGGCGGCTGGCACGGAGGCCGGGCTACATGAGAAGCTCGACAGGGCCTGGGATCGGGTTCCTTTCC 1023
Query 175 CCAGCAGTGGGCACACTGTTCCGGTTCCCAGGAGGGGTGTCTGGCGAGGAGTCCCACCACTCGGAGTCCAGGGC 248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1024 CCAGCAGTGGGCACACTGTTCCGGTTCCCAGGAGGGGTGTCTGGCGAGGAGTCCCACCACTCGGAGTCCAGGGC 1097
Query 249 CAGACAGTGTGGCCTTGACTCGAGAGGCCTCTTGGTCCGGAGCCCTGTTTCCAAGAGTGCAGCAGCCCCTACTG 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1098 CAGACAGTGTGGCCTTGACTCGAGAGGCCTCTTGGTCCGGAGCCCTGTTTCCAAGAGTGCAGCAGCCCCTACTG 1171
Query 323 TGACCTCTGTGAGAGGAACCTCGGCGCACTTTGGGATTCAGCTCAGAGGTGGCACCAGATTGCCTGACAGGCTT 396
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1172 TGACCTCTGTGAGAGGAACCTCGGCGCACTTTGGGATTCAGCTCAGAGGTGGCACCAGATTGCCTGACAGGCTT 1245
Query 397 AGCTGGCCGTGTGGCCCTGGGAGTGCTGGGTGGCAGCAAGAGTTTGCAGCCATGGATAGTTCTGAGACCCTGGA 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1246 AGCTGGCCGTGTGGCCCTGGGAGTGCTGGGTGGCAGCAAGAGTTTGCAGCCATGGATAGTTCTGAGACCCTGGA 1319
Query 471 CGCCAGCTGGGAGGCAGCCTGCAGCGATGGAGCAAGGCGTGTCCGGGCAGCAGGCTCTCTGCCATCAGCAGAGT 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1320 CGCCAGCTGGGAGGCAGCCTGCAGCGATGGAGCAAGGCGTGTCCGGGCAGCAGGCTCTCTGCCATCAGCAGAGT 1393
Query 545 TGAGTAGCAACAGCTGCAGCCCTGGCTGTGGCCCTGAGGTCCCCCCAACCCCTCCTGGCTCTCACAGTGCCTTT 618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1394 TGAGTAGCAACAGCTGCAGCCCTGGCTGTGGCCCTGAGGTCCCCCCAACCCCTCCTGGCTCTCACAGTGCCTTT 1467
Query 619 ACCTCAAGCTTTAGCTTTATTCGGCTCTCGCTTGGCTCTGCCGGGGAACGTGGAGAAGCAGAAGGCTGCCCACC 692
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1468 ACCTCAAGCTTTAGCTTTATTCGGCTCTCGCTTGGCTCTGCCGGGGAACGTGGAGAAGCAGAAGGCTGCCCACC 1541
Query 693 ATCCAGAGAGGCTGAGTCCCATTGCCAGAGCCCCCAGGAGATGGGAGCCAAAGCTGCCAGCTTGGACGGGCCTC 766
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1542 ATCCAGAGAGGCTGAGTCCCATTGCCAGAGCCCCCAGGAGATGGGAGCCAAAGCTGCCAGCTTGGACGGGCCTC 1615
Query 767 ACGAGGACCCGCGATGTCTCTCTCAGCCCTTCAGTCTCTTGGCTACACGGGTCTCTGCAGACTTGGCCCAGGCC 840
||||||||||||||||||||||||.|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1616 ACGAGGACCCGCGATGTCTCTCTCGGCCCTTCAGTCTCTTGGCTACACGGGTCTCTGCAGACTTGGCCCAGGCC 1689
Query 841 GCAAGGAACAGCTCCAGGCCAGAGCGTGACATGCATTCTTTACCAGACATGGACCCTGGCTCCTCCAGTTCTCT 914
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1690 GCAAGGAACAGCTCCAGGCCAGAGCGTGACATGCATTCTTTACCAGACATGGACCCTGGCTCCTCCAGTTCTCT 1763
Query 915 GGATCCCTCACTGGCTGGCTGTGGTGGTGATGGGAGCAGCGGCTCAGGGGATGCCCACTCTTGGGACACCCTGC 988
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1764 GGATCCCTCACTGGCTGGCTGTGGTGGTGATGGGAGCAGCGGCTCAGGGGATGCCCACTCTTGGGACACCCTGC 1837
Query 989 TCAGGAAATGGGAGCCAGTGCTGCGGGACTGCCTGCTGAGAAACCGGAGGCAGATGGAGGTAATATCCTTAAGA 1062
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1838 TCAGGAAATGGGAGCCAGTGCTGCGGGACTGCCTGCTGAGAAACCGGAGGCAGATGGAGGTAATATCCTTAAGA 1911
Query 1063 TTAAAACTTCAGAAACTTCAGGAAGATGCAGTTGAGAATGATGATTATGATAAAGCTGAGACGTTACAACAAAG 1136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1912 TTAAAACTTCAGAAACTTCAGGAAGATGCAGTTGAGAATGATGATTATGATAAAGCTGAGACGTTACAACAAAG 1985
Query 1137 ATTAGAAGACCTGGAACAAGAGAAAATCAGCCTGCACTTTCAACTTCCTTCAAGGCAGCCAGCTCTTAGCAGTT 1210
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1986 ATTAGAAGACCTGGAACAAGAGAAAATCAGCCTGCACTTTCAACTTCCTTCAAGGCAGCCAGCTCTTAGCAGTT 2059
Query 1211 TCCTGGGTCACCTGGCAGCACAAGTCCAGGCTGCCTTGCGCCGTGGGGCCACTCAGCAGGCCAGCGGAGATGAC 1284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2060 TCCTGGGTCACCTGGCAGCACAAGTCCAGGCTGCCTTGCGCCGTGGGGCCACTCAGCAGGCCAGCGGAGATGAC 2133
Query 1285 ACCCACACCCCACTGAGAATGGAGCCGAGGCTGTTGGAACCCACTGCTCAGGACAGCTTGCACGTGTCCATCAC 1358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2134 ACCCACACCCCACTGAGAATGGAGCCGAGGCTGTTGGAACCCACTGCTCAGGACAGCTTGCACGTGTCCATCAC 2207
Query 1359 GAGACGAGACTGGCTTCTTCAGGAAAAGCAGCAGCTACAGAAAGAAATCGAAGCTCTCCAAGCAAGGATGTTTG 1432
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2208 GAGACGAGACTGGCTTCTTCAGGAAAAGCAGCAGCTACAGAAAGAAATCGAAGCTCTCCAAGCAAGGATGTTTG 2281
Query 1433 TGCTGGAAGCCAAAGATCAACAGCTGAGAAGGGAAATAGAGGAGCAAGAGCAGCAACTCCAGTGGCAGGGCTGC 1506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2282 TGCTGGAAGCCAAAGATCAACAGCTGAGAAGGGAAATAGAGGAGCAAGAGCAGCAACTCCAGTGGCAGGGCTGC 2355
Query 1507 GACCTGACCCCACTGGTGGGCCAGCTGTCCCTGGGTCAGCTGCAGGAGGTCAGCAAGGCCTTGCAGGACACCCT 1580
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2356 GACCTGACCCCACTGGTGGGCCAGCTGTCCCTGGGTCAGCTGCAGGAGGTCAGCAAGGCCTTGCAGGACACCCT 2429
Query 1581 GGCCTCAGCCGGTCAGATTCCCTTCCATGCAGAGCCACCGGAAACCATAAGGAGCCTCCAGGAAAGAATAAAAT 1654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2430 GGCCTCAGCCGGTCAGATTCCCTTCCATGCAGAGCCACCGGAAACCATAAGGAGCCTCCAGGAAAGAATAAAAT 2503
Query 1655 CCCTCAACTTGTCACTTAAAGAAATCACTACTAAGGTGTGTATGAGTGAGAAATTCTGCAGCACCCTGAGGAAG 1728
|||||||||||||||||||||||||||||||||
Sbjct 2504 CCCTCAACTTGTCACTTAAAGAAATCACTACTA----------------------------------------- 2536
Query 1729 AAAGTTAACGATATTGAAACCCAACTACCAGCCTTGCTTGAAGCCAAAATGCATGCCATATCAGGAAACCATTT 1802
||||||||||||
Sbjct 2537 --------------------------------------------------------------AGGAAACCATTT 2548
Query 1803 CTGGACGGCTAAAGACCTCACCGAGGAGATTAGATCATTAACATCAGAGAGAGAAGGGCTGGAGGGACTCCTCA 1876
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2549 CTGGACGGCTAAAGACCTCACCGAGGAGATTAGATCATTAACATCAGAGAGAGAAGGGCTGGAGGGACTCCTCA 2622
Query 1877 GCAAGCTGTTGGTGTTGAGTTCCAGGAATGTCAAAAAGCTGGGAAGTGTTAAAGAAGATTACAACAGACTGAGA 1950
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2623 GCAAGCTGTTGGTGTTGAGTTCCAGGAATGTCAAAAAGCTGGGAAGTGTTAAAGAAGATTACAACAGACTGAGA 2696
Query 1951 AGAGAAGTGGAGCACCAGGAGACTGCCTATG---------AAACAAGTGT-----GAAGGAAAATACT-ATGAA 2009
||||||||||||||||||||||||||||||| ..||||.||| | |.||.|||.| ||||
Sbjct 2697 AGAGAAGTGGAGCACCAGGAGACTGCCTATGGTAGGTAGTGCACAACTGTTCCCCG--GCAAGATATTGATGA- 2767
Query 2010 GTACATGGAAACACTT----------------AAGAAT-----------------AA----ACTGTGCAGCTGC 2046
||..|| || .||||| || ||||||.||
Sbjct 2768 -TATTTG-------TTGTGTTTTGTGGCCAGGCAGAATGTTCTGTGCCTTATGTGAACGTCACTGTGAAG---- 2829
Query 2047 AAGTGTC------CAC----------TGCTT-GGGAAAGTGTGGGAAGCTGACTTGGAA--------------G 2089
||.||| ||| |.||| ||||.|.|.|.||.||.||.|||||.| .
Sbjct 2830 -AGCGTCATGGAGCACATGGCCCTTTTCCTTGGGGACATTTTTGGCAGGTGCCTTGGCAAACCGAATGGAATTA 2902
Query 2090 CTTGTC-------GATTGCTTATCCAGAGCCTACAGCT---------------CCAG---GAAGCCAGGGGAAG 2138
|||||| |.||.|.|||.||.|....|||.|| ||.| .||
Sbjct 2903 CTTGTCAGCTTTTGTTTTCATATTCACATGTGACATCTTTTCTTTTTCTGTTCCCTGTCTCAA----------- 2965
Query 2139 CCTGTCTGTAGAAGATGAGAGGCAGATGG--ATGACTTAGAG-----------------------GGAGC---- 2183
|||||.|.| |.|.|.||.| |.| ||.|.|||||| .||||
Sbjct 2966 CCTGTGTTT----GCTAATAGCC---TTGTTATTATTTAGAGCAGTCTCTCCCTTGGCAAGGTCTTGAGCATTT 3032
Query 2184 --------------TGCTCCTCCTATTCCCCCCAGGCTCC-ACTCCGAG------------------------- 2217
|..||.||||.||..|||..|||||| .||||..|
Sbjct 3033 TCTTTGTGTGACAATTATCTTCCTTTTGTCCCTTGGCTCCGTCTCCTTGTCTGCACAATCATAGACTAAATCAG 3106
Query 2218 --------GATAAAA-----GGAAGACCCCTTTGAAG-GAATCTTACAT-------CCTTTCTGCAGAACT--- 2267
||.|||| |||||||| .|.||| |..||||..|| |.|||||| |||.||
Sbjct 3107 GCTGATCTGAGAAAATTGAGGGAAGACC---ATAAAGTGGCTCTTCTATGTGTGGACTTTTCTG-AGAGCTTCT 3176
Query 2268 -----------------TGGAGAAAAGTGTGAA----GACATAGGCAAGAAGCTATTG--TACTTG-----GAA 2313
||.||||.| |||||| |.|.|||.||| |.|| |.|||| |.|
Sbjct 3177 TTCCCCAGGAAGGATGATGTAGAAGA-TGTGAATGCCGCCTTAGCCAA------AGTGTCTGCTTGTCAGAGGA 3243
Query 2314 GATCAA-------------CTTCACACAGCAATCC----ACAGTCATGATGAAGATCTCA--TTCAGTCTCTCA 2368
|.|||| ||| ||| .|||||.|.|.||..|.||.| || .||||.|
Sbjct 3244 GTTCAAGTGTTCCTGTGTTCTT----------TCCTTTTCCAGTCGTTAGGAGTAACTGAGCTT---ACTCTGA 3304
Query 2369 G-----------GAGGGAGCTCCAGATGGTGAAGGAAACTCTGCAGGCCATGATCCTGCAGCTCCAGCCAGCAA 2431
| |||| |||||| |||.|.||.| ||.|.|.||| .||||
Sbjct 3305 GATTTGCACCCAGAGG--------GATGGT--------CTCAGAAGAC---------GCTGGTTCAG--TGCAA 3351
Query 2432 A-GGAGGCGGGAGAAAGAGAAGCTGCAGCTTCCTGCATGACAGCTGGTGTCCACGAAGCACAAGCC-------- 2496
| .|||..||.|.||| |||..|.|.|.|.|..|||| || |.||..|.|.|.|
Sbjct 3352 ATTGAGATGGTAAAAA------------CTTATTTCTTAAAAAATGGT-TC--CTAAATAAATGTCATTTACTA 3410
Query 2497 -------------------------------------------- 2496
Sbjct 3411 AAACAAATGAAAGAAATATATATATGAATAAATGGCTATATTTT 3454
