Nucleotide Global Alignment
Description
- Query:
- TRCN0000477739
- Subject:
- XR_001738902.1
- Aligned Length:
- 3551
- Identities:
- 1942
- Gaps:
- 1607
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ACGGTGGTGGCTGGTTCTGCGCCGGATCCGGGAGAGGGGCGGGCGCCATTGTGCTTCGCTGCCGACTGCATTTC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CTCAGTCACGGGCCTAGAACTCCAAGGAGAAAGGCGGCGGTGCGTGTTGCTGCGAGTGGGACGCGCACTGGTCG 148
Query 1 ----------------------------------ATGGAGTCTAAACCTTCAAGGATTCCAAGAAGAATTTCTG 40
||||||||||||||||||||||||||||||||||||||||
Sbjct 149 GTGCCGGCTCAGGAGCCGGGAAAAATCTTTAAGAATGGAGTCTAAACCTTCAAGGATTCCAAGAAGAATTTCTG 222
Query 41 TTCAACCTTCCAGCTCCTTAAGTGCTAGGATGATGTCTGGAAGCAGAGGAAGTAGTTTAAATGATACCTATCAC 114
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 TTCAACCTTCCAGCTCCTTAAGTGCTAGGATGATGTCTGGAAGCAGAGGAAGTAGTTTAAATGATACCTATCAC 296
Query 115 TCAAGAGACTCTTCATTTAGATTGGATTCTGAATATCAGTCTACATCAGCATCAGCATCTGCGTCACCATTTCA 188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 TCAAGAGACTCTTCATTTAGATTGGATTCTGAATATCAGTCTACATCAGCATCAGCATCTGCGTCACCATTTCA 370
Query 189 ATCTGCATGGTATAGTGAATCTGAGATAACTCAGGGAGCACGCTCAAGATCGCAGAACCAGCAACGGGATCATG 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 ATCTGCATGGTATAGTGAATCTGAGATAACTCAGGGAGCACGCTCAAGATCGCAGAACCAGCAACGGGATCATG 444
Query 263 ATTCAAAAAGACCTAAACTTTCCTGTACAAACTGTACTACCTCAGCTGGGAGAAATGTTGGAAATGGTTTAAAC 336
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 ATTCAAAAAGACCTAAACTTTCCTGTACAAACTGTACTACCTCAGCTGGGAGAAATGTTGGAAATGGTTTAAAC 518
Query 337 ACATTATCAGATTCATCTTGGAGGCATAGTCAAGTTCCTAGATCTTCATCAATGGTACTTGGATCATTTGGAAC 410
||||||||||
Sbjct 519 ACATTATCAG---------------------------------------------------------------- 528
Query 411 AGACTTAATGAGAGAGAGGAGAGATTTGGAGAGAAGAACAGATTCCTCTATTAGTAATCTTATGGATTATAGTC 484
Sbjct 529 -------------------------------------------------------------------------- 528
Query 485 ACCGAAGTGGTGATTTCACAACTTCATCATATGTTCAAGACAGAGTTCCTTCATATTCACAAGGAGCAAGACCA 558
||||||||||||||||||||||||||||||||||||||||||||
Sbjct 529 ------------------------------ATGTTCAAGACAGAGTTCCTTCATATTCACAAGGAGCAAGACCA 572
Query 559 AAAGAAAACTCAATGAGCACTTTACAGTTGAATACATCATCCACAAACCACCAATTGCCTTCTGAACATCAGAC 632
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 573 AAAGAAAACTCAATGAGCACTTTACAGTTGAATACATCATCCACAAACCACCAATTGCCTTCTGAACATCAGAC 646
Query 633 CATACTAAGTTCTAGGGATTCCAGAAATTCTTTAAGATCAAATTTTTCTTCAAGAGAATCAGAATCTTCCCGAA 706
||||||||||||||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 647 CATACTAAGTTCTAGGGACTCCAGAAATTCTTTAAGATCAAATTTTTCTTCAAGAGAATCAGAATCTTCCCGAA 720
Query 707 GCAATACGCAGCCTGGATTTTCTTACAGTTCAAGTAGAGATGAAGCCCCAATCATAAGCAATTCAGAAAGGGTT 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 GCAATACGCAGCCTGGATTTTCTTACAGTTCAAGTAGAGATGAAGCCCCAATCATAAGCAATTCAGAAAGGGTT 794
Query 781 GTTTCATCTCAAAGACCATTTCAAGAATCTTCTGACAATGAAGGTAGGCGGACAACGAGGAGATTGCTGTCACG 854
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 795 GTTTCATCTCAAAGACCATTTCAAGAATCTTCTGACAATGAAGGTAGGCGGACAACGAGGAGATTGCTGTCACG 868
Query 855 CATAGCTTCTAGCATGTCATCTACTTTTTTTTCACGAAGATCTAGTCAGGATTCCTTGAATACAAGATCATTGA 928
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 869 CATAGCTTCTAGCATGTCATCTACTTTTTTTTCACGAAGATCTAGTCAGGATTCCTTGAATACAAGATCATTGA 942
Query 929 ATTCTGAAAATTCTTACGTTTCTCCAAGAATCTTGACAGCTTCACAGTCCCGTAGTAATGTACCATCAGCTTCT 1002
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 943 ATTCTGAAAATTCTTACGTTTCTCCAAGAATCTTGACAGCTTCACAGTCCCGTAGTAATGTACCATCAGCTTCT 1016
Query 1003 GAAGTTCCCGATAATAGGGCATCTGAAGCTTCTCAGGGATTTCGATTTCTTAGGCGAAGATGGGGTTTGTCATC 1076
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1017 GAAGTTCCCGATAATAGGGCATCTGAAGCTTCTCAGGGATTTCGATTTCTTAGGCGAAGATGGGGTTTGTCATC 1090
Query 1077 TCTTAGCCACAATCATAGCTCTGAGTCAGATTCAGAAAATTTTAACCAAGAATCTGAAGGTAGAAATACAGGAC 1150
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1091 TCTTAGCCACAATCATAGCTCTGAGTCAGATTCAGAAAATTTTAACCAAGAATCTGAAGGTAGAAATACAGGAC 1164
Query 1151 CATGGTTATCTTCCTCACTTAGAAATAGATGCACACCTTTGTTCTCTAGAAGGAGGCGAGAGGGAAGAGATGAA 1224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1165 CATGGTTATCTTCCTCACTTAGAAATAGATGCACACCTTTGTTCTCTAGAAGGAGGCGAGAGGGAAGAGATGAA 1238
Query 1225 TCTTCAAGGATACCTACCTCTGATACATCATCTAGATCTCATATTTTTAGAAGAGAATCAAATGAAGTGGTTCA 1298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1239 TCTTCAAGGATACCTACCTCTGATACATCATCTAGATCTCATATTTTTAGAAGAGAATCAAATGAAGTGGTTCA 1312
Query 1299 CCTTGAAGCACAGAATGATCCTCTTGGAGCTGCTGCCAACAGACCACAAGCATCTGCAGCATCAAGCAGTGCCA 1372
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1313 CCTTGAAGCACAGAATGATCCTCTTGGAGCTGCTGCCAACAGACCACAAGCATCTGCAGCATCAAGCAGTGCCA 1386
Query 1373 CAACAGGTGGCTCTACATCAGATTCGGCTCAAGGTGGAAGAAATACAGGAATATCAGGGATTCTTCCTGGTTCC 1446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1387 CAACAGGTGGCTCTACATCAGATTCGGCTCAAGGTGGAAGAAATACAGGAATATCAGGGATTCTTCCTGGTTCC 1460
Query 1447 TTATTCCGGTTTGCAGTCCCCCCAGCACTTGGGAGTAATTTGACCGACAATGTCATGATCACAGTAGATATTAT 1520
||||||||||||||||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1461 TTATTCCGGTTTGCAGTCCCTCCAGCACTTGGGAGTAATTTGACCGACAATGTCATGATCACAGTAGATATTAT 1534
Query 1521 TCCTTCAGGTTGGAATTCAGCTGATGGTAAAAGTGATAAAACTAAAAGTGCGCCTTCAAGAGATCCAGAAAGAT 1594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1535 TCCTTCAGGTTGGAATTCAGCTGATGGTAAAAGTGATAAAACTAAAAGTGCGCCTTCAAGAGATCCAGAAAGAT 1608
Query 1595 TGCAGAAAATAAAAGAGAGCCTCCTTTTAGAGGACTCAGAAGAAGAAGAAGGTGACTTATGTAGAATTTGTCAA 1668
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1609 TGCAGAAAATAAAAGAGAGCCTCCTTTTAGAGGACTCAGAAGAAGAAGAAGGTGACTTATGTAGAATTTGTCAA 1682
Query 1669 ATGGCAGCTGCATCATCATCTAATTTGCTGATAGAGCCATGCAAGTGCACAGGAAGTTTGCAGTATGTCCACCA 1742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1683 ATGGCAGCTGCATCATCATCTAATTTGCTGATAGAGCCATGCAAGTGCACAGGAAGTTTGCAGTATGTCCACCA 1756
Query 1743 AGACTGTATGAAAAAGTGGTTACAGGCCAAAATTAACTCTGGTTCTTCATTAGAAGCTGTAACCACCTGTGAAC 1816
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1757 AGACTGTATGAAAAAGTGGTTACAGGCCAAAATTAACTCTGGTTCTTCATTAGAAGCTGTAACCACCTGTGAAC 1830
Query 1817 TATGTAAAGAGAAGTTGGAGCTTAACCTGGAGGATTTTGATATTCATGAACTACATAGAGCTCATGCAAATGAA 1890
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1831 TATGTAAAGAGAAGTTGGAGCTTAACCTGGAGGATTTTGATATTCATGAACTACATAGAGCTCATGCAAATGAA 1904
Query 1891 CAA-----------------------GCTGAGTATGAGTTTATCAGCTCTGGTCTCTACCTAGTGGTGTTATTG 1941
||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1905 CAAGTTAGTATATTTTGCCTAATTTGGCTGAGTATGAGTTTATCAGCTCTGGTCTCTACCTAGTGGTGTTATTG 1978
Query 1942 CACTTGTGCGAACAAAGCTTTTCTGATATGATGGGAAATACAAATGAACCAAGCACACGTGTCCGATTTATTAA 2015
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1979 CACTTGTGCGAACAAAGCTTTTCTGATATGATGGGAAATACAAATGAACCAAGCACACGTGTCCGATTTATTAA 2052
Query 2016 CCTTGCAAGAACTCTTCAGGCACATATGGAAGATCTCGAAACTTCAGAGGATGATTCCGAAGAAGACGGAGACC 2089
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2053 CCTTGCAAGAACTCTTCAGGCACATATGGAAGATCTCGAAACTTCAGAGGATGATTCCGAAGAAGACGGAGACC 2126
Query 2090 ATAACAGGACATTTGATATTGCC--------------------------------------------------- 2112
|||||||||||||||||||||||
Sbjct 2127 ATAACAGGACATTTGATATTGCCTAACTTCATATAAGACAGATGGATGATCTGTGAACATAAGTGTTTATTAAA 2200
Query 2113 -------------------------------------------------------------------------- 2112
Sbjct 2201 AATGGCAATTAAATATAAATTACTTTTGTGGGGGAATGCCTAATAAATACATTGACTATATATAAAATGAATAT 2274
Query 2113 -------------------------------------------------------------------------- 2112
Sbjct 2275 ATACATACACATGTATGCCTGTATATATATATTCATTCTCCAGTGTTGCTGAATTAAAATTCTGCTGGACTTTT 2348
Query 2113 -------------------------------------------------------------------------- 2112
Sbjct 2349 TAACATAGCAAATCCGATGTTTATAAACTGGTAATCAAAAAGGTTTTTTCTTTTAGGTGAGTGGGAAAGTATTA 2422
Query 2113 -------------------------------------------------------------------------- 2112
Sbjct 2423 CCCTTGTTTTAAATATCTAAGCAATGCCTATCAACCCTTTTTTGTGTTATGATTACTGTAGTCATATTTATGAA 2496
Query 2113 -------------------------------------------------------------------------- 2112
Sbjct 2497 AAAAGGTTTGTGTTTTACTCTTGCTAGTGAGAAAAGTGGGACAAAATATACTTTTGAAATAAAATGCTATATGG 2570
Query 2113 -------------------------------------------------------------------------- 2112
Sbjct 2571 CACCTAATTATTTTTTCTTTTAAAATGCCTTAAGTTGCAGTCTCATTTTGATAATCATTTGCTTCCAGTGTTTA 2644
Query 2113 -------------------------------------------------------------------------- 2112
Sbjct 2645 AAAATTAAAAAAAGAATGGGGAGAAGGTTATGAGAAGAGCATTATTAAGTTTCCAAATTTAATTTGAATTCCAA 2718
Query 2113 -------------------------------------------------------------------------- 2112
Sbjct 2719 ATTCACCTAGCAATAAAATCTAATTTTTAAAAAGTATATAAATATAAAATGTATAAATGATGGATAGATTTTTG 2792
Query 2113 -------------------------------------------------------------------------- 2112
Sbjct 2793 TATTGATTTGCAAAATGCAGATTATATTTGATAGGCTATAGTATGTAGATATTCCTTTTAGGAATATTACAGCT 2866
Query 2113 -------------------------------------------------------------------------- 2112
Sbjct 2867 GTAAATTATATGAGACTTGCCAGTCAAATGCTATTTGGTTTAAAAAAATTATTGCAATCTCAAGTTAATGGAAT 2940
Query 2113 -------------------------------------------------------------------------- 2112
Sbjct 2941 ATTTTTAAATCCCACATTCAGAGTTTAAAACACTGGTTTTCAATGTGTTTTTTAGTGTTGTCACTTGTTTATAG 3014
Query 2113 -------------------------------------------------------------------------- 2112
Sbjct 3015 ATAAATATATAAATAACCTGTTTGGATCCTGGTCCTTTTTAACTGTTCCTTGGTAATTCTGAGCATTTATTTGA 3088
Query 2113 -------------------------------------------------------------------------- 2112
Sbjct 3089 TGACTTAATATTTTTCACTACCTTTGGAGAACAGATGAACATTATTCACCATGAATGGATCTATACTGTGTGGT 3162
Query 2113 -------------------------------------------------------------------------- 2112
Sbjct 3163 CATGAGTTGTGTATACTTCCATAACACTGTATTTTTCTTCTGTCAGTACCCTTAGGATACACTTTAAAACACCT 3236
Query 2113 -------------------------------------------------------------------------- 2112
Sbjct 3237 TAAGGTCTGATGTTATGGCAACAAACTACTTTTTCAAACCTAAATAGGAACCATGTAATTTCTCAAAAGTGATT 3310
Query 2113 ------------------------------------------------------------------------- 2112
Sbjct 3311 GAACAGTTTGCCCACACTTAGTTTGTTGGTCTTATGTAAAACATTGGCTCAAAATAAAGTACACACTGATTTA 3383
