Nucleotide Global Alignment

Description

Query:
TRCN0000478042
Subject:
XM_011241134.2
Aligned Length:
2761
Identities:
2133
Gaps:
473

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ATGCGGGTGACGCCGTTGCCGCGGCGACTCCTCGTCGTCTCCGCCCCCTCCCCCCCCCAAATCCCCTCAGGCTC  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  GGCTGCGCCGGGGCCGCCGGCGGGTTCCAGAGGTGGCCTCCGCCCCGGCCGCTCCGCCCACGCCCCCCGCGCCT  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  CCGCGCCCGCCTCCGCCCGCCCTGCGCCTCCCTTCCCCCTCCCCGCCCCGCGGCGGCCGCTCGGCCCGGCTCGC  222

Query    1  ---------ATGGCGGCGCTGA------------------------------------------------GCGG  17
                     |||||||||||||                                                ||||
Sbjct  223  GCTTCGAAGATGGCGGCGCTGAGTGGCGGCGGTGGCAGCAGCAGCGGTGGCGGCGGCGGCGGTGGCGGCGGCGG  296

Query   18  TGGCGGT---------GGTGGCGGCGCGGAGCCGGGCCAGGCTCTGTTCAACGGGGACATGGAGCCCGAGGCCG  82
            |||||||         ||.||||||||.||||.||||||||||||||||||.||.|||||||||||.|||    
Sbjct  297  TGGCGGTGGCGACGGCGGCGGCGGCGCCGAGCAGGGCCAGGCTCTGTTCAATGGCGACATGGAGCCGGAG----  366

Query   83  GCGCCGGCGCCGGCGCCGCGGCCTCTTCGGCTGCGGACCCTGCCATTCCGGAGGAGGTGTGGAATATCAAACAA  156
              ||||||||.|||||||||||||||||||||||||||||.||||||||.||.|||||.|||||||||||.|||
Sbjct  367  --GCCGGCGCTGGCGCCGCGGCCTCTTCGGCTGCGGACCCGGCCATTCCTGAAGAGGTATGGAATATCAAGCAA  438

Query  157  ATGATTAAGTTGACACAGGAACATATAGAGGCCCTATTGGACAAATTTGGTGGGGAGCATAATCCACCATCAAT  230
            |||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||.|||||||||||
Sbjct  439  ATGATTAAGTTGACACAGGAACATATAGAGGCCCTATTGGACAAATTTGGTGGAGAGCATAACCCACCATCAAT  512

Query  231  ATATCTGGAGGCCTATGAAGAATACACCAGCAAGCTAGATGCACTCCAACAAAGAGAACAACAGTTATTGGAAT  304
            |||.|||||||||||||||||.||||||||||||||||||||.||.||.|||||||||||.|||.|.|||||||
Sbjct  513  ATACCTGGAGGCCTATGAAGAGTACACCAGCAAGCTAGATGCCCTTCAGCAAAGAGAACAGCAGCTTTTGGAAT  586

Query  305  CTCTGGGGAACGGAACTGATTTTTCTGTTTCTAGCTCTGCATCAATGGATACCGTTACATCTTCTTCCTCTTCT  378
            |.|||||.||.|||.|.||||||||||||||||||||||||||||||||.|||||||||||.||.|||||||||
Sbjct  587  CCCTGGGTAATGGAGCAGATTTTTCTGTTTCTAGCTCTGCATCAATGGACACCGTTACATCCTCCTCCTCTTCT  660

Query  379  AGCCTTTCAGTGCTACCTTCATCTCTTTCAGTTTTTCAAAATCCCACAGATGTGGCACGGAGCAACCCCAAGTC  452
            |||||||||||||||||.||||||||||||||||||||||.|||||||||||...||||||.||||||||||||
Sbjct  661  AGCCTTTCAGTGCTACCATCATCTCTTTCAGTTTTTCAAACTCCCACAGATGCATCACGGAACAACCCCAAGTC  734

Query  453  ACCACAAAAACCTATCGTTAGAGTCTTCCTGCCCAACAAACAGAGGACAGTGGTACCTGCAAGGTGTGGAGTTA  526
            ||||||.||||||||||||||||||||||||||||||||||||||||||||||||||.|||||.|||||.||||
Sbjct  735  ACCACAGAAACCTATCGTTAGAGTCTTCCTGCCCAACAAACAGAGGACAGTGGTACCCGCAAGATGTGGTGTTA  808

Query  527  CAGTCCGAGACAGTCTAAAGAAAGCACTGATGATGAGAGGTCTAATCCCAGAGTGCTGTGCTGTTTACAGAATT  600
            ||||.||||||||||||||||||||||||||||||||||||||.||||||||.|||||||||||||||||||||
Sbjct  809  CAGTTCGAGACAGTCTAAAGAAAGCACTGATGATGAGAGGTCTCATCCCAGAATGCTGTGCTGTTTACAGAATT  882

Query  601  CAGGATGG---------AGAGAAGAAACCAATTGGTTGGGACACTGATATTTCCTGGCTTACTGGAGAAGAATT  665
            ||||||||         ||||||||||||||||||.||||||||.||.||||||||||||||||||||.||.||
Sbjct  883  CAGGATGGGTATGGTTTAGAGAAGAAACCAATTGGCTGGGACACGGACATTTCCTGGCTTACTGGAGAGGAGTT  956

Query  666  GCATGTGGAAGTGTTGGAGAATGTTCCACTTACAACACACAACTTTGTACGAAAAACGTTTTTCACCTTAGCAT  739
            .|||||.|||||..||||||||||.||||||||||||||||||||||||||.|||||.||||||||||||||||
Sbjct  957  ACATGTTGAAGTACTGGAGAATGTCCCACTTACAACACACAACTTTGTACGGAAAACTTTTTTCACCTTAGCAT  1030

Query  740  TTTGTGACTTTTGTCGAAAGCTGCTTTTCCAGGGTTTCCGCTGTCAAACATGTGGTTATAAATTTCACCAGCGT  813
            |||||||||||||.||||||||||||||||||||||||||.|||||||||||||||||||||||||||||||||
Sbjct 1031  TTTGTGACTTTTGCCGAAAGCTGCTTTTCCAGGGTTTCCGTTGTCAAACATGTGGTTATAAATTTCACCAGCGT  1104

Query  814  TGTAGTACAGAAGTTCCACTGATGTGTGTTAATTATGACCAACTTGATTTGCTGTTTGTCTCCAAGTTCTTTGA  887
            |||||||||||.|||||||||||||||||.||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1105  TGTAGTACAGAGGTTCCACTGATGTGTGTAAATTATGACCAACTTGATTTGCTGTTTGTCTCCAAGTTCTTTGA  1178

Query  888  ACACCACCCAATACCACAGGAAGAGGCGTCCTTAGCAGAGACTGCCCTAACATCTGGATCATCCCCTTCCGCAC  961
            .||.||||||.||||||||||.|||||.|||||..|||||||||||||..|||||||   ||||.|||||||||
Sbjct 1179  GCATCACCCAGTACCACAGGAGGAGGCCTCCTTCCCAGAGACTGCCCTTCCATCTGG---ATCCTCTTCCGCAC  1249

Query  962  CCGCCTCGGACTCTATTGGGCCCCAAATTCTCACCAGTCCGTCTCCTTCAAAATCCATTCCAATTCCACAGCCC  1035
            ||.||||.|||||||.||||||||||||.|||||||||||.|||||||||||||||||||||||||||||||||
Sbjct 1250  CCCCCTCAGACTCTACTGGGCCCCAAATCCTCACCAGTCCATCTCCTTCAAAATCCATTCCAATTCCACAGCCC  1323

Query 1036  TTCCGACCAGCAGATGAAGATCATCGAAATCAATTTGGGCAACGAGACCGATCCTCATCAGCTCCCAATGTGCA  1109
            ||||||||||||||||||||||||||.|||||.|||||||||||||||||.|||||.||||||||||||||.||
Sbjct 1324  TTCCGACCAGCAGATGAAGATCATCGCAATCAGTTTGGGCAACGAGACCGGTCCTCCTCAGCTCCCAATGTTCA  1397

Query 1110  TATAAACACAATAGAACCTGTCAATATTGAT------------------------------------GACTTGA  1147
            ||||||||||||.||.|||||.|||||.|||                                    ||.||||
Sbjct 1398  TATAAACACAATTGAGCCTGTGAATATCGATGAAAAATTCCCAGAAGTGGAATTACAGGATCAAAGGGATTTGA  1471

Query 1148  TTAGAGACCAAGGATTTCGTGGTGATG-----------------------------------------------  1174
            ||||||||||.||.|||||||||||||                                               
Sbjct 1472  TTAGAGACCAGGGGTTTCGTGGTGATGGAGCCCCCTTGAACCAACTGATGCGCTGTCTTCGGAAATACCAATCC  1545

Query 1175  -------------------------------------------------------------------------G  1175
                                                                                     |
Sbjct 1546  CGGACTCCCAGCCCCCTCCTCCATTCTGTCCCCAGTGAAATAGTGTTTGATTTTGAGCCTGGCCCAGTGTTCAG  1619

Query 1176  AGGATCAACCACAGGTTTGTCTGCTACCCCCCCTGCCTCATTACCTGGCTCACTAACTAACGTGAAAGCCTTAC  1249
            |||.|||||||||||.|||||.||.|||||.|||||||||||||||||||||||.|||||||||||||||||||
Sbjct 1620  AGGGTCAACCACAGGCTTGTCCGCCACCCCGCCTGCCTCATTACCTGGCTCACTCACTAACGTGAAAGCCTTAC  1693

Query 1250  AGAAATCTCCAGGACCTCAGCGAGAAAGGAAGTCATCT------TCATCCTCAGAAGACAGGAATCGAATGAAA  1317
            |||||||||||||.||||||||.|||||||||||||||      ||||||||.||.|||||.|.|||.||||||
Sbjct 1694  AGAAATCTCCAGGTCCTCAGCGGGAAAGGAAGTCATCTTCTTCCTCATCCTCGGAGGACAGAAGTCGGATGAAA  1767

Query 1318  ACACTTGGTAGACGGGACTCGAGTGATGATTGGGAGATTCCTGATGGGCAGATTACAGTGGGACAAAGAATTGG  1391
            ||||||||||||.|.||.||.||||||||.|||||||||||||||||.|||||||||||||||||.||||||||
Sbjct 1768  ACACTTGGTAGAAGAGATTCAAGTGATGACTGGGAGATTCCTGATGGACAGATTACAGTGGGACAGAGAATTGG  1841

Query 1392  ATCTGGATCATTTGGAACAGTCTACAAGGGAAAGTGGCATGGTGATGTGGCAGTGAAAATGTTGAATGTGACAG  1465
            ||||||.|||||||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1842  ATCTGGGTCATTTGGAACTGTCTACAAGGGAAAGTGGCATGGTGATGTGGCAGTGAAAATGTTGAATGTGACAG  1915

Query 1466  CACCTACACCTCAGCAGTTACAAGCCTTCAAAAATGAAGTAGGAGTACTCAGGAAAACACGACATGTGAATATC  1539
            ||||.||||||||.|||.||||.|||||||||||||||||||||||.|||||||||||.|||||||||||||||
Sbjct 1916  CACCCACACCTCAACAGCTACAGGCCTTCAAAAATGAAGTAGGAGTGCTCAGGAAAACTCGACATGTGAATATC  1989

Query 1540  CTACTCTTCATGGGCTATTCCACAAAGCCACAACTGGCTATTGTTACCCAGTGGTGTGAGGGCTCCAGCTTGTA  1613
            ||.||.||||||||||||||.|||||||||||||||||.||||||||.|||||||||||||||||||||||.||
Sbjct 1990  CTCCTTTTCATGGGCTATTCTACAAAGCCACAACTGGCAATTGTTACACAGTGGTGTGAGGGCTCCAGCTTATA  2063

Query 1614  TCACCATCTCCATATCATTGAGACCAAATTTGAGATGATCAAACTTATAGATATTGCACGACAGACTGCACAGG  1687
            ||||||||||||.||||||||||||||||||||||||||||||||||||||||||||.||.|||||||||||||
Sbjct 2064  TCACCATCTCCACATCATTGAGACCAAATTTGAGATGATCAAACTTATAGATATTGCTCGGCAGACTGCACAGG  2137

Query 1688  GCATGGATTACTTACACGCCAAGTCAATCATCCACAGAGACCTCAAGAGTAATAATATATTTCTTCATGAAGAC  1761
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2138  GCATGGATTACTTACACGCCAAGTCAATCATCCACAGAGACCTCAAGAGTAATAATATATTTCTTCATGAAGAC  2211

Query 1762  CTCACAGTAAAAATAGGTGATTTTGGTCTAGCTACAGTGAAATCTCGATGGAGTGGGTCCCATCAGTTTGAACA  1835
            |||||.||||||||||||||.|||||||||||.||||||||||||||.||||||||||||||||||||||||||
Sbjct 2212  CTCACGGTAAAAATAGGTGACTTTGGTCTAGCCACAGTGAAATCTCGGTGGAGTGGGTCCCATCAGTTTGAACA  2285

Query 1836  GTTGTCTGGATCCATTTTGTGGATGGCACCAGAAGTCATCAGAATGCAAGATAAAAATCCATACAGCTTTCAGT  1909
            ||||||||||||.|||||||||||||||||||||||.||||||||||||||||||||.||.||.||||||||||
Sbjct 2286  GTTGTCTGGATCTATTTTGTGGATGGCACCAGAAGTAATCAGAATGCAAGATAAAAACCCGTATAGCTTTCAGT  2359

Query 1910  CAGATGTATATGCATTTGGAATTGTTCTGTATGAATTGATGACTGGACAGTTACCTTATTCAAACATCAACAAC  1983
            ||||.||.|||||.|||||.|||||||||||.|||.|||||||.||.|||.|||||||||||||||||||||||
Sbjct 2360  CAGACGTGTATGCGTTTGGGATTGTTCTGTACGAACTGATGACCGGCCAGCTACCTTATTCAAACATCAACAAC  2433

Query 1984  AGGGACCAGATAATTTTTATGGTGGGACGAGGATACCTGTCTCCAGATCTCAGTAAGGTACGGAGTAACTGTCC  2057
            |||||.||||||||||||||||||||||||||||||||.|||||||||||||||||||||||||||||||||||
Sbjct 2434  AGGGATCAGATAATTTTTATGGTGGGACGAGGATACCTATCTCCAGATCTCAGTAAGGTACGGAGTAACTGTCC  2507

Query 2058  AAAAGCCATGAAGAGATTAATGGCAGAGTGCCTCAAAAAGAAAAGAGATGAGAGACCACTCTTTCCCCAAATTC  2131
            ||||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||||||||||
Sbjct 2508  AAAAGCCATGAAGAGATTAATGGCAGAGTGCCTCAAAAAGAAAAGAGACGAGAGACCACTCTTTCCCCAAATTC  2581

Query 2132  TCGCCTCTATTGAGCTGCTGGCCCGCTCATTGCCAAAAATTCACCGCAGTGCATCAGAACCCTCCTTGAATCGG  2205
            |||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||
Sbjct 2582  TCGCCTCCATTGAGCTGCTGGCCCGCTCATTGCCAAAAATTCACCGCAGTGCATCAGAACCTTCCTTGAATCGG  2655

Query 2206  GCTGGTTTCCAAACAGAGGATTTTAGTCTATATGCTTGTGCTTCTCCAAAAACACCCATCCAGGCAGGGGGATA  2279
            |||||||||||||||||.|||||||||||.|||||||||||||||||.||||||||||||||.|||||||||||
Sbjct 2656  GCTGGTTTCCAAACAGAAGATTTTAGTCTGTATGCTTGTGCTTCTCCGAAAACACCCATCCAAGCAGGGGGATA  2729

Query 2280  TGGTGCGTTT----CCTGTCCAC  2298
            |||.|..|||    ||| ||.|.
Sbjct 2730  TGGAGAATTTGCAGCCT-TCAAG  2751

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