Nucleotide Global Alignment

Description

Query:
TRCN0000478076
Subject:
XR_001783762.1
Aligned Length:
2748
Identities:
1499
Gaps:
1082

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  CTGGGAAGTGATGTCCGCTTCCTGCCCTCCCTGCGTGTCTGAGGGCGTAGAGGAAGCCCGTAAACAAACTACAA  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  GTCCCAGAAGGCGGTGCGTCCGGAGTCTGGAGTAGGCTGGGGCCGAGCCGCCGGGCTCGCGGAGGCGGCGGCGG  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  CTGCTGCTAAGGCTGAAGGAGCCGGGCCGGGCCCGCGGCAGAGGCCGTGGCTGGAACTGGGAAGGTGGCGGGGA  222

Query    1  ----------------ATGGCGACGTCGGGGGCGAACGGGCCTGGTTCGGCCACGGCCTCGGCTTCCAATCCGC  58
                            |||||||||||.||||||||||||||.|||||.|||||.|||||.||.||||||||.|
Sbjct  223  CGGACGCGGGGGTAAGATGGCGACGTCAGGGGCGAACGGGCCGGGTTCCGCCACAGCCTCAGCGTCCAATCCAC  296

Query   59  GCAAATTTAGTGAGAAGATTGCGCTGCAGAAGCAGCGTCAGGCCGAGGAGACGGCGGCCTTCGAGGAGGTGATG  132
            ||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  GCAAGTTTAGTGAGAAGATTGCGCTGCAGAAGCAGCGTCAGGCCGAGGAGACGGCGGCCTTCGAGGAGGTGATG  370

Query  133  ATGGACATCGGCTCCACCCGGTTACAGGCCCAAAAACTGCGACTGGCATACACAAGGAGCTCTCATTATGGTGG  206
            |||||||||||||||||.|||||||||||||||||||||||||||||.||.|||||||||||.|||||||||||
Sbjct  371  ATGGACATCGGCTCCACACGGTTACAGGCCCAAAAACTGCGACTGGCTTATACAAGGAGCTCCCATTATGGTGG  444

Query  207  GTCTCTGCCCAATGTTAACCAGATTGGCTCTGGCCTGGCCGAGTTCCAGAGCCCCCTCCACTCACCTTTGGATT  280
            .||||||||||||||||||||||||||||.|||||||||.|||||||||||||||||.||||||||||||||||
Sbjct  445  TTCTCTGCCCAATGTTAACCAGATTGGCTGTGGCCTGGCTGAGTTCCAGAGCCCCCTTCACTCACCTTTGGATT  518

Query  281  CATCTCGGAGCACTCGGCACCATGGGCTGGTGGAACGGGTGCAGCGAGATCCTCGAAGAATGGTGTCCCCACTT  354
            ||||||||||||||||||||||||||.|||||||||||||.||.||||||.|.||.|||||||||||||||||.
Sbjct  519  CATCTCGGAGCACTCGGCACCATGGGTTGGTGGAACGGGTACAACGAGATGCCCGCAGAATGGTGTCCCCACTC  592

Query  355  CGCCGATACACCCGCCACATTGACAGCTCTCCCTATAGTCCTGCCTACTTATCTCCTCCCCCAGAGTCTAGCTG  428
            |||||||||.||||||||||||||||.|||||.|||||.||||||||.|||||||||||||||||||||.||||
Sbjct  593  CGCCGATACCCCCGCCACATTGACAGTTCTCCATATAGCCCTGCCTATTTATCTCCTCCCCCAGAGTCTGGCTG  666

Query  429  GCGAAGGACGATGGCCTGGGGCAATTTCCCTGCAGAGAAGGGGCAGTTGTTTCGACTACCATCTGCACTTAACA  502
            ||||||||.||||.||||||||||..||||.||.||||||||||||||||||.||||.||.|||||||||||||
Sbjct  667  GCGAAGGATGATGCCCTGGGGCAACCTCCCAGCTGAGAAGGGGCAGTTGTTTAGACTGCCGTCTGCACTTAACA  740

Query  503  GGACAAGCTCTGACTCTGCCCTTCATACAAGTGTGATGAACCCCAGTCCCCAGGATACCTACCCAGGCCCCACA  576
            |||||||||||||||||||.|||||.|||||||||||||||||.|..|||||.||.||.||.||||||||||||
Sbjct  741  GGACAAGCTCTGACTCTGCTCTTCACACAAGTGTGATGAACCCTAACCCCCAAGACACTTATCCAGGCCCCACA  814

Query  577  CCTCCCAGCATCCTGCCCA---GCCGACGTGGGGGTATTCTGGATGGTGAAATGGACCCCAAAGTACCTGCTAT  647
            ||||||||..|||||||||   |||||.|.||.|||.|||||||||||||.|||||..|.|||||.||||||||
Sbjct  815  CCTCCCAGTGTCCTGCCCAGCCGCCGAGGAGGAGGTTTTCTGGATGGTGAGATGGATGCTAAAGTCCCTGCTAT  888

Query  648  TGAGGAGAACTTGCTAGATGACAAGCATTTGCTGAAGCCATGGGATGCTAAGAAGCTATCCTCATCCTCTTCCC  721
            ||||||||||.||.||||||||||||||.|||||||.||.|||||||||||||||||.||||||||.||.||.|
Sbjct  889  TGAGGAGAACGTGGTAGATGACAAGCATCTGCTGAAACCTTGGGATGCTAAGAAGCTGTCCTCATCTTCCTCTC  962

Query  722  GACCTCGGTCCTGTGAAGTCCCTGGAATTAACATCTTTCCATCTCCTGACCAGCCTGCCAATGTGCCTGTCCTC  795
            |||||||.||||||||||||||||||||.|||||||||||||||||||||||||||||.|||||||||||||||
Sbjct  963  GACCTCGATCCTGTGAAGTCCCTGGAATCAACATCTTTCCATCTCCTGACCAGCCTGCTAATGTGCCTGTCCTC  1036

Query  796  CCACCTGCCATGAACACGGGGGGCTCCCTACCTGACCTCACCAACCTGCACTTTCCCCCACCACTGCCCACCCC  869
            |||||||||||||||||.||.||||||||||||||||||||||||||.|||||.||.||.|||||||||||.||
Sbjct 1037  CCACCTGCCATGAACACAGGAGGCTCCCTACCTGACCTCACCAACCTACACTTCCCTCCTCCACTGCCCACACC  1110

Query  870  CCTGGACCCTGAAGAGACAGCCTACCCTAGCCTGAGTGGGGGCAACAGTACCTCCAATTTGACCCACACCATGA  943
            ||||||||||||.|||||||.|||.||.||||||||||||||||||||||||.|||||||||||||.||.||||
Sbjct 1111  CCTGGACCCTGAGGAGACAGTCTATCCCAGCCTGAGTGGGGGCAACAGTACCACCAATTTGACCCATACTATGA  1184

Query  944  CTCACCTGGGCATCAGCAGGGGCATGGGCCTGGGCCCAGGCTATGATGCACCAGGACTTCATTCACCTCTCAGC  1017
            |.||..||||||||||..|.||..|||||.|||||||..|||||||||.||                       
Sbjct 1185  CCCATTTGGGCATCAGTGGAGGTCTGGGCTTGGGCCCCAGCTATGATGTAC-----------------------  1235

Query 1018  CACCCATCCCTGCAGTCCTCCCTAAGCAATCCCAACCTCCAGGCTTCCCTGAGCAGTCCTCAGCCCCAGCTTCA  1091
                                                                                      
Sbjct 1236  --------------------------------------------------------------------------  1235

Query 1092  GGGCTCCCACAGCCACCCCTCTCTGCCTGCCTCCTCCTTGGCCCGCCATGTACTGCCCACCACCTCCCTGGGCC  1165
                                                                                      
Sbjct 1236  --------------------------------------------------------------------------  1235

Query 1166  ACCCCTCACTCAGTGCTCCGGCTCTTTCCTCCTCCTCTTCCTCCTCCTCCACTTCATCTCCTGTTTTGGGCGCC  1239
                                                                                      
Sbjct 1236  --------------------------------------------------------------------------  1235

Query 1240  CCCTCTTACCCTGCTTCTACCCCTGGGGCCTCCCCCCACCACCGCCGTGTGCCCCTCAGCCCCCTGAGTTTGCT  1313
                                                                                      
Sbjct 1236  --------------------------------------------------------------------------  1235

Query 1314  CGCGGGCCCAGCCGACGCCAGAAGGTCCCAACAGCAGCTGCCCAAACAGTTTTCGCCAACAATGTCACCCACCT  1387
                                                                                      
Sbjct 1236  --------------------------------------------------------------------------  1235

Query 1388  TGTCTTCCATCACTCAGGGCGTCCCCCTGGATACCAGTAAACTGTCCACTGACCAGCGGTTACCCCCATACCCA  1461
                          ||||||||.|||.||||||||||||||.||.|.|||||||||||.||.||||||||||||
Sbjct 1236  --------------CAGGGCGTTCCCTTGGATACCAGTAAATTGCCTACTGACCAGCGATTGCCCCCATACCCA  1295

Query 1462  TACAGCTCCCCAAGTCTGGTTCTGCCTACCCAGCCCCACACCCCAAAGTCTCTACAGCAGCCAGGGCTGCCCTC  1535
            ||.|||.||||||||||.|||.|.||.|||||.||.|.|||||||||||||||||||||      |.|||||||
Sbjct 1296  TATAGCCCCCCAAGTCTAGTTATACCCACCCATCCACCCACCCCAAAGTCTCTACAGCA------GTTGCCCTC  1363

Query 1536  TCAGTCTTGTTCAGTGCAGTCCTCAGGTGGGCAGCCCCCAGGCAGGCAGTCTCATTATGGGACACCGTACCCAC  1609
            ||||.|.||.|.|||||||.||||||||||.|||||.||||||||||||.|.|||||||||.|||.||||||||
Sbjct 1364  TCAGGCCTGCTTAGTGCAGCCCTCAGGTGGACAGCCTCCAGGCAGGCAGCCACATTATGGGGCACTGTACCCAC  1437

Query 1610  CTGGGCCCAGTGGGCATGGGCAACAGTCTTACCACCGGCCAATGAGTGACTTCAACCTGGGGAATCTGGAGCAG  1683
            |||||.|||||||.||||||||||||.||||||||||.|||||.|.||||||||.|.||||||||||||||||.
Sbjct 1438  CTGGGTCCAGTGGACATGGGCAACAGCCTTACCACCGCCCAATAAATGACTTCAGCTTGGGGAATCTGGAGCAA  1511

Query 1684  TTCAGCATGGAGAGCCCATCAGCCAGCCTGGTGCTGGATCCCCCTGGCTTTTCTGAAGGGCCTGGATTTTTAGG  1757
            ||||.||||||||||||||||.||||||||||||||||||||||||.||||||||||||.||||||||||||||
Sbjct 1512  TTCAACATGGAGAGCCCATCAACCAGCCTGGTGCTGGATCCCCCTGCCTTTTCTGAAGGTCCTGGATTTTTAGG  1585

Query 1758  GGGTGAGGGGCCAATGGGTGGCCCCCAGGATCCCCACACCTTCAACCACCAGAACTTGACCCACTGTTCCCGCC  1831
            |.|||||||..|||||.|||||||||||||.||.|||..|.|||||||||||||||||||||||||||||||||
Sbjct 1586  GAGTGAGGGATCAATGAGTGGCCCCCAGGACCCTCACGTCCTCAACCACCAGAACTTGACCCACTGTTCCCGCC  1659

Query 1832  ATGGCTCAGGGCCTAACATCATCCTCACAGGGGACTCCTCTCCAGGTTTCTCTAAGGAGATTGCAGCAGCCCTG  1905
            ||||||||||.|||||.|||||.||||||||.|||||.||.|||||||||||||||||||||||||||||||||
Sbjct 1660  ATGGCTCAGGACCTAATATCATACTCACAGGAGACTCTTCCCCAGGTTTCTCTAAGGAGATTGCAGCAGCCCTG  1733

Query 1906  GCCGGAGTGCCTGGCTTTGAGGTGTCAGCAGCTGGATTGGAGCTAGGGCTTGGGCTAGAAGATGAGCTGCGCAT  1979
            ||.|||||||||||||||||||||||||||.||||.||||||||.||.||.|||||||||||||||||||||||
Sbjct 1734  GCTGGAGTGCCTGGCTTTGAGGTGTCAGCATCTGGGTTGGAGCTGGGCCTGGGGCTAGAAGATGAGCTGCGCAT  1807

Query 1980  GGAGCCACTGGGCCTGGAAGGGCTAAACATGCTGAGTGACCCCTGTGCCCTGCTGCCTGATCCTGCTGTGGAGG  2053
            |||||||||||||||||||||.||||..||||||||||||||||||||||||||||||||.|||||||||||||
Sbjct 1808  GGAGCCACTGGGCCTGGAAGGACTAACTATGCTGAGTGACCCCTGTGCCCTGCTGCCTGACCCTGCTGTGGAGG  1881

Query 2054  AGTCATTCCGCAGTGACCGGCTCCAA------------------------------------------------  2079
            |.||||||||.|||||.|||||.||.                                                
Sbjct 1882  ACTCATTCCGTAGTGATCGGCTACAGTGAGGGGACCTCACTGCCATCCTTCTTCATGGCCCTGTCCCATCAGTC  1955

Query 2080  --------------------------------------------------------------------------  2079
                                                                                      
Sbjct 1956  TTCATCCCTTCCCCCTGGCCAGTAGAGACTACTCTCTGCCCCCAGATCCTTTTTCTAATATGAATGAAGGATCC  2029

Query 2080  --------------------------------------------------------------------------  2079
                                                                                      
Sbjct 2030  TAAAACTGAGGAAAGGGAAGGGGCTTGGCCAGGTGGCCCCTGAATGCTGTATGTCTGGTGGGCTTGGGGGAATT  2103

Query 2080  --------------------------------------------------------------------------  2079
                                                                                      
Sbjct 2104  CAAGGGAGGGCCTAAAAGCACTTGTAACTTTGAAAACCGTCTGTCTGGAGGTCAGAGCCTGTTGGGAAGCAAGG  2177

Query 2080  --------------------------------------------------------------------------  2079
                                                                                      
Sbjct 2178  TGTAGAGGGAAATCTTGGAGAGAGGGCTTGTCCAGAAGGGATGGGCACTACCAGCCCCTCCCTATTTCTCTTCC  2251

Query 2080  --------------------------------------------------------------------------  2079
                                                                                      
Sbjct 2252  CCTTGCAATGGAAGAGAGAGCCAGAATGGATATTATTTTTTATTAAATATATTATATGTTAATAAAAAATCCTA  2325

Query 2080  ----------  2079
                      
Sbjct 2326  TTAAACCTTT  2335

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