Nucleotide Global Alignment
Description
- Query:
- TRCN0000478206
- Subject:
- XR_390341.1
- Aligned Length:
- 2878
- Identities:
- 1372
- Gaps:
- 1364
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 TGATACGTTTCCGGCCAGTGACGCACTTCCACTTTGCTAGGCGCGCGGTTCCCGGTCTGAAAAGTAGAACGCGG 74
Query 1 ----------------------------------ATGGCTTCCTCGCGAGCCTCTTCCACGGCAACCAAAACTA 40
|||||.|||||.||||||||.||||||.||||||||||.|
Sbjct 75 ATTTGGCTAGGGCCTCGCGTCTCCGCCGCCCGGCATGGCCTCCTCACGAGCCTCCTCCACGACAACCAAAACCA 148
Query 41 AAGCACCCGACGACTTAGTTGCTCCGGTCGTGAAGAAACCACACATCTATTATGGAAGTTTGGAAGAGAAGGAG 114
||||.||.|||||.|||||||||||.||.||||||||||||||||||||.||||||||.|||||||||||.|||
Sbjct 149 AAGCGCCTGACGATTTAGTTGCTCCCGTTGTGAAGAAACCACACATCTACTATGGAAGCTTGGAAGAGAAAGAG 222
Query 115 AGGGAGCGTCTGGCCAAAGGAGAGTCTGGGATTTTGGGGAAAGACGGACTTAAAGCAGGGATCGAAGCTGGAAA 188
.||||.||.|||||||||||||||||||||||||||||.|||||.|||||.|||||.||.||.|||||.|||||
Sbjct 223 CGGGAACGCCTGGCCAAAGGAGAGTCTGGGATTTTGGGAAAAGAAGGACTCAAAGCCGGCATTGAAGCAGGAAA 296
Query 189 TATTAATATAACCTCTGGAGAAGTGTTTGAAATTGAAGAGCATATCAGCGAGCGACAGGCAGAAGTATTGGCTG 262
||||||||||||.||.||||||||||||||||||||.|||||.|||||.|||||.|||||||||||.|||||.|
Sbjct 297 TATTAATATAACATCCGGAGAAGTGTTTGAAATTGAGGAGCACATCAGTGAGCGGCAGGCAGAAGTCTTGGCAG 370
Query 263 AGTTTGAGAGAAGGAAGCGAGCCCGGCAGATCAATGTTTCCACAGATGACTCAGAGGTCAAAGCTTGCCTTAGA 336
|||||||.|||||.|||||||||||||||||||||||||||||||||||||||||||||||.|||||||||.||
Sbjct 371 AGTTTGAAAGAAGAAAGCGAGCCCGGCAGATCAATGTTTCCACAGATGACTCAGAGGTCAAGGCTTGCCTTCGA 444
Query 337 GCCTTGGGGGAACCCATCACACTTTTTGGAGAGGGTCCTGCTGAAAGAAGAGAAAGGTTAAGAAATATCCTCTC 410
||||||||.||.||.|||||.||||||||||||||.|||||||||.||||||||||||||||||||||.|||||
Sbjct 445 GCCTTGGGAGAGCCTATCACGCTTTTTGGAGAGGGCCCTGCTGAACGAAGAGAAAGGTTAAGAAATATTCTCTC 518
Query 411 AGTTGTCGGTACTGATGCCTTGAAAAAGACCAAAAAGGATGATGAGAAGTCTAAAAAGTCCAAAGAAGAGTATC 484
|||.|||||.|||||||||||.||||||||.|||||.||||||||.||||||||.|||||.||.||.|||||||
Sbjct 519 AGTGGTCGGGACTGATGCCTTAAAAAAGACGAAAAAAGATGATGAAAAGTCTAAGAAGTCAAAGGAGGAGTATC 592
Query 485 AGCAAACCTGGTATCATGAAGGACCAAATAGCTTGAAGGTGGCAAGACTATGGATTGCTAATTATTCGTTGCCC 558
|||||||||||||.||||||||.|||||||||.||||||||||.|||.|.|||||||||||||||||..|.|||
Sbjct 593 AGCAAACCTGGTACCATGAAGGGCCAAATAGCCTGAAGGTGGCCAGATTGTGGATTGCTAATTATTCACTCCCC 666
Query 559 AGGGCAATGAAACGCTTGGAAGAGGCCCGACTCCATAAGGAGATTCCTGAGACAACAAGGACCTCCCAGATGCA 632
|||||||||||||||||.||.||||||||.||||||||||||||||||||||||||.||.||||||||||||||
Sbjct 667 AGGGCAATGAAACGCTTAGAGGAGGCCCGTCTCCATAAGGAGATTCCTGAGACAACCAGAACCTCCCAGATGCA 740
Query 633 AGAGCTGCACAAGTCTCTCCGGTCTTTGAATAATTTTTGCAGTCAGATTGGGGATGATCGGCCTATCTCCTACT 706
.|||||||||||||||||||||||||||||||||||.||||||||||||||.|||||.|||||.||||||||||
Sbjct 741 GGAGCTGCACAAGTCTCTCCGGTCTTTGAATAATTTCTGCAGTCAGATTGGAGATGACCGGCCGATCTCCTACT 814
Query 707 GTCACTTTAGTCCCAATTCCAAGATGCTGGCCACAGCTTGTTGGAGTGGGCTTTGCAAGCTCTGGTCTGTTCCT 780
|.|||||.||.||||||||.||.|||||.|||||||||||||||||||||||||||||||||||||||||.|||
Sbjct 815 GCCACTTCAGCCCCAATTCTAAAATGCTAGCCACAGCTTGTTGGAGTGGGCTTTGCAAGCTCTGGTCTGTCCCT 888
Query 781 GATTGCAACCTCCTTCACACTCTTCGAGGGCATAACACAAATGTAGGAGCAATTGTATTCCATCCCAAATCCAC 854
||.||||.|||||||||||||||||||||.||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 GACTGCAGCCTCCTTCACACTCTTCGAGGCCATAACACAAATGTAGGAGCAATTGTATTCCATCCCAAATCCAC 962
Query 855 TGTCTCCTTGGACCCAAAAGATGTCAACCTGGCCTCTTGTGCGGCTGATGGCTCTGTGAAGCTTTGGAGTCTCG 928
||||||.|||||||..||.|||||||||||||||||||||||.||||||||.|||||||||||||||||.||.|
Sbjct 963 TGTCTCGTTGGACCAGAAGGATGTCAACCTGGCCTCTTGTGCTGCTGATGGTTCTGTGAAGCTTTGGAGCCTTG 1036
Query 929 ACAGTGATGAACCAGTGGCAGATATTGAAGGCCATACAGTGCGTGTGGCGCGGGTAATGTGGCATCCTTCAGGA 1002
||||.|||||||||||||||||||||||||||||||||||||||||.||.|||||||||||||||||.|||||.
Sbjct 1037 ACAGCGATGAACCAGTGGCAGATATTGAAGGCCATACAGTGCGTGTAGCTCGGGTAATGTGGCATCCATCAGGG 1110
Query 1003 CGTTTCCTGGGCACCACCTGCTATGACCGTTCATGGCGCTTATGGGATTTGGAGGCTCAAGAGGAGATCCTGCA 1076
||||||||||||||.|||||.|||||||||||||||||||||||||||||.|||||||||||||||||||||||
Sbjct 1111 CGTTTCCTGGGCACAACCTGTTATGACCGTTCATGGCGCTTATGGGATTTAGAGGCTCAAGAGGAGATCCTGCA 1184
Query 1077 TCAGGAAGGCCATAGCATGGGTGTGTATGACATTGCCTTCCATCAAGATGGCTCTTTGGCTGGCACTGGGGGAC 1150
.|||||||||||.|||| ||||||||
Sbjct 1185 CCAGGAAGGCCACAGCA-------------------------------------------------TGGGGGAC 1209
Query 1151 TGGATGCATTTGGTCGAGTTTGGGACCTACGCACAGGACGTTGTATCATGTTCTTAGAAGGCCACCTGAAAGAA 1224
|||||||||||||.||.|||||||||||||||||||||||.||.||.||||||.|.||||||||||||||.|||
Sbjct 1210 TGGATGCATTTGGCCGGGTTTGGGACCTACGCACAGGACGCTGCATTATGTTCCTGGAAGGCCACCTGAAGGAA 1283
Query 1225 ATCTATGGAATAAATTTCTCCCCCAATGGCTATCACATTGCAACCGGCAGTGGTGACAACACCTGCAAAGTGTG 1298
||||||||.|||||||||..||||||||||||.||||||||.||.|||||||||||||||||||||||||||||
Sbjct 1284 ATCTATGGGATAAATTTCAGCCCCAATGGCTACCACATTGCCACTGGCAGTGGTGACAACACCTGCAAAGTGTG 1357
Query 1299 GGACCTCCGACAGCGGCGTTGCGTCTACACCATCCCTGCTCATCAGAACTTAGTGACTGGTGTCAAGTTTGAGC 1372
||||||.||.|||||.||.||.||||||||||||||.||.|||||||||||||||||.||||||||.|||||||
Sbjct 1358 GGACCTTCGGCAGCGACGCTGTGTCTACACCATCCCCGCCCATCAGAACTTAGTGACCGGTGTCAAATTTGAGC 1431
Query 1373 CTATCCATGGGAACTTCTTGCTTACTGGTGCCTATGATAACACAGCCAAGATCTGGACGCACCCAGGCTGGTCC 1446
|||||||||||.||||||||||.||.|||||||||||.||.|||||||||||||||||.|||||||||||||||
Sbjct 1432 CTATCCATGGGGACTTCTTGCTCACAGGTGCCTATGACAATACAGCCAAGATCTGGACCCACCCAGGCTGGTCC 1505
Query 1447 CCGCTGAAGACTCTGGCTGGCCACGAAGGCAAAGTGATGGGCCTAGATATTTCTTCCGATGGGCAGCTCATAGC 1520
||.||||||||.||||||||.||.||.|||||||||||||||||.||.||||||||.|||||||||||||||||
Sbjct 1506 CCACTGAAGACCCTGGCTGGTCATGAGGGCAAAGTGATGGGCCTGGACATTTCTTCTGATGGGCAGCTCATAGC 1579
Query 1521 CACTTGCTCATATGACAGGACCTTCAAGCTGTGGATGGCTGAA------------------------------- 1563
|||.|||||.||||||||.|||||||||||.||||||||.||.
Sbjct 1580 CACGTGCTCCTATGACAGAACCTTCAAGCTCTGGATGGCAGAGTAGGCCAGACCACGGAAGGACTCAGAACTTG 1653
Query 1564 -------------------------------------------------------------------------- 1563
Sbjct 1654 TGTTCTCACGACGGAGCCATTTCCTCAAAGGAAAAGAATTGTATTGTGTTCTATCATGTTTCCTGCCAAATACC 1727
Query 1564 -------------------------------------------------------------------------- 1563
Sbjct 1728 ATGTGTTGGATTGGATTTTCACATCAGCCCACTCTTGAGGAAGCCTGTCTTTAGGTGGTAGCAAGCCCTTCGTG 1801
Query 1564 -------------------------------------------------------------------------- 1563
Sbjct 1802 GTTAGAACAAAATTCTCATCTCAGGTTCTGCCAAAAACTGTAGATGTTGTATAGACTCAACACTTTTCAGTGCC 1875
Query 1564 -------------------------------------------------------------------------- 1563
Sbjct 1876 CTGCCTCCTCCCTCACACTCAGGATTGTGACCGTTCTTTCATTTTTGTTTTTTTTATTTGGCATTTTGAGACAG 1949
Query 1564 -------------------------------------------------------------------------- 1563
Sbjct 1950 AATCTGTAAGTATATCCCTGACTGTCCCGGAAGCCTTACATTGTAAGTAATCCTCCTGTCCTGCCCTTCGAGTG 2023
Query 1564 -------------------------------------------------------------------------- 1563
Sbjct 2024 ATGGCATTATGGAAATGTGCTGCTGTGCCTGGCAGTTGTATTTTTAGTGCTTGAACTTGGCTCTCTATAACATG 2097
Query 1564 -------------------------------------------------------------------------- 1563
Sbjct 2098 GTATGTGCTTGGGACTACGGGTGATTCAGCAAGCAAGATAGCTGGACTGGCTAGGCAGTGGTGGCGCATGCCTT 2171
Query 1564 -------------------------------------------------------------------------- 1563
Sbjct 2172 TAATCCCAGCTTGGGAGGCAGAGGCGGGCAGATCTCTTGAGTTTGAGGCCAGCCTGGTCTACAGAGCAAGTTCA 2245
Query 1564 -------------------------------------------------------------------------- 1563
Sbjct 2246 AGGACAGCCTTTTCTCTACCCTGTCTCGAGGAAAAAAGAAAAAAAAGATAGCTGGACTGTATTTGAAATCTCCC 2319
Query 1564 -------------------------------------------------------------------------- 1563
Sbjct 2320 CAGTTATGAGGACATGTCACCACCATTTGTGGCGAGCTCCTTTCCTGACGCCGAGAATGAAACCAGAGCCATAG 2393
Query 1564 -------------------------------------------------------------------------- 1563
Sbjct 2394 ACTGCAGCTGTGTGATAGCTCCACAGTAAAAAAGATTTTCCCTTTCTGTGGTGTTCACGAAGGATGTTCACTGC 2467
Query 1564 -------------------------------------------------------------------------- 1563
Sbjct 2468 AGCTGGGACTCAGAACTGCACACTTGGCCTTGTTAGAGCCAAGTTAGAGCCTCTTCCTTTTGGCTTTGAAGTTT 2541
Query 1564 -------------------------------------------------------------------------- 1563
Sbjct 2542 GATATCCTTCATGACAAAACAATCTGGCCATTGTATCCAGATTCAAAGGGGTTTTAAAAACAAACATGATGTCT 2615
Query 1564 -------------------------------------------------------------------------- 1563
Sbjct 2616 GTGTTGTACAGCCTCCTTCCTGTTGGTTATTTAAAGGGTGTACCTTATGTATTAAAGAACACTTCATGTCAAAG 2689
Query 1564 -------------------------------------------------------------------------- 1563
Sbjct 2690 GAACTGGAAAAAATCCTAATTTATGTTTGGGTGTTACCAAACATAAACTTTTATATATAAATACACACACACAT 2763
Query 1564 ------------------------------------------------------------------ 1563
Sbjct 2764 ACATACATACACACACACACACACTTGCTGAGAGTAAAATCTTACTATAAAAACTCTTTGAAAGGA 2829
