Nucleotide Global Alignment

Description

Query:
TRCN0000478244
Subject:
XM_017316810.1
Aligned Length:
1328
Identities:
942
Gaps:
289

Alignment

Query    1  ATGGAGAAAA----------------------------------AGAAA---ATGGTAACTCAGGGTAACCAGG  37
            |||.||||.|                                  ||.||   ||||    .|||||||||||||
Sbjct    1  ATGAAGAAGAACGAGCCACTGACCCCGGGTTATCATGGATTCCCAGCAAGGGATGG----CCAGGGTAACCAGG  70

Query   38  AGCCGACAACAACTCCTGACGCAATGGTTCAGCCTTTTACTACCATCCCATTTCCACCACCTCCGCAGAATGGA  111
            ||||.||||||||||||||||||||||||||||||||||||||||||||.||.|||||||||||.||.||||||
Sbjct   71  AGCCAACAACAACTCCTGACGCAATGGTTCAGCCTTTTACTACCATCCCGTTCCCACCACCTCCACAAAATGGA  144

Query  112  ATTCCCACAGAGTATGGGGTGCCACACACTCAAGACTATGCCGGCCAGACCGGTGAGCATAACCTGACACTCTA  185
            |||||||||||.|||||.||||||||||||||.||||||||||||||||||.||||.|||||||||||.|||||
Sbjct  145  ATTCCCACAGAATATGGAGTGCCACACACTCAGGACTATGCCGGCCAGACCAGTGAACATAACCTGACCCTCTA  218

Query  186  CGGAAGTACGCAAGCC-CACGGGGAGCAGAGCAGCAACTCACCCAGCACACAAAATGGATCTCTTAC---GACA  255
            |||.||||||| |||| ||.||.||.|||||.|||||.||||||||||..||.|||||||||||.||   ||||
Sbjct  219  CGGGAGTACGC-AGCCTCATGGAGAACAGAGTAGCAATTCACCCAGCAACCAGAATGGATCTCTCACGCAGACA  291

Query  256  GAAGGTGGAGCACAGACAGACGGCCAGCAGTCACAGACACAAAGTAGTGAAAATTCAGAGAGTAAATCTACCCC  329
            |||||||||||||||||||||||.||.||||||||||||||||||||||||||||||||||||||||||||.||
Sbjct  292  GAAGGTGGAGCACAGACAGACGGACAACAGTCACAGACACAAAGTAGTGAAAATTCAGAGAGTAAATCTACGCC  365

Query  330  GAAACGGCTGCATGTCTCTAATATTCCTTTCCGCTTCCGGGACCCTGACCTCCGGCAGATGTTTGG--------  395
            .||.||.||.|||||||||||||||||.|||||||||||.||||||||||||||||||||||||||        
Sbjct  366  CAAGCGACTACATGTCTCTAATATTCCCTTCCGCTTCCGAGACCCTGACCTCCGGCAGATGTTTGGGCAGTTTG  439

Query  396  ----------------------------------------------GGGATTCGGGTTCGTAACTTTCGAGAAT  423
                                                          ||||||||||||||||||||||||||||
Sbjct  440  GCAAAATCCTAGATGTGGAAATAATCTTTAATGAGCGCGGCTCCAAGGGATTCGGGTTCGTAACTTTCGAGAAT  513

Query  424  AGTGCTGATGCAGACAGGGCCAGGGAGAAATTACACGGCACCGTGGTAGAGGGCCGTAAAATCGAGGTGAATAA  497
            ||||||||||||||||||||||||||||||||.|||||||||||||||||||||||||||||||||||||||||
Sbjct  514  AGTGCTGATGCAGACAGGGCCAGGGAGAAATTGCACGGCACCGTGGTAGAGGGCCGTAAAATCGAGGTGAATAA  587

Query  498  TGCTACAGCACGTGTAATGACCAATAAGAAGATGGTCACACCATATGCAAATGGTTGGAAATTAAGCCCAGTAG  571
            |||.||||||||.||.||||||||.||||||||||||||.||||||||||||||.|||||.|||||||||||||
Sbjct  588  TGCAACAGCACGGGTCATGACCAACAAGAAGATGGTCACGCCATATGCAAATGGCTGGAAGTTAAGCCCAGTAG  661

Query  572  TTGGAGCTGTATATGGTCCGGAGTTATATGCAGCATCCAGCTTTCAAGCAGATGTGTCCCTAGGCAATGATGCA  645
            ||||||||||.||||||||.|||||||||||||||||||||||||||||.||||||||||||||||||||.||.
Sbjct  662  TTGGAGCTGTGTATGGTCCTGAGTTATATGCAGCATCCAGCTTTCAAGCTGATGTGTCCCTAGGCAATGAGGCG  735

Query  646  GCAGTGCCCCTATCAGGAAGAGGGGGTATCAACACTTACATTCCTTTAATCA------------TTCCTGGCTT  707
            ||.||||||.|.|||||||||||.||.||||||||||||||.|||.||||||            ||||||||||
Sbjct  736  GCTGTGCCCTTGTCAGGAAGAGGAGGCATCAACACTTACATCCCTCTAATCAGTCTCCCTTTAGTTCCTGGCTT  809

Query  708  CCCTTACCCTACTGCAGCCACCACGGCAGCCGCTTTCAGAGGAGCCCATTTGAGGGGCAGAGGGCGGACAGTAT  781
            |||||||||.||||||||||||||||||||.||||||.|||||||||||.||||||||||||||||||||||.|
Sbjct  810  CCCTTACCCAACTGCAGCCACCACGGCAGCTGCTTTCCGAGGAGCCCATCTGAGGGGCAGAGGGCGGACAGTGT  883

Query  782  ATGGTGCAGTCCGAGCGGTACCTCCAACAGCCATCCCCGCCTATCCAGGTGTGGTTTACCAGGACGGATTTTAC  855
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  884  ATGGTGCAGTCCGAGCGGTACCTCCAACAGCCATCCCCGCCTATCCAGGTGTGGTTTACCAGGACGGATTTTAC  957

Query  856  GGTGCTGACCTCTAT---GGTG--GATATG---------CAGCCTA----------------------------  887
            |||||||||||||||   |.||  ||.|||         ||..|||                            
Sbjct  958  GGTGCTGACCTCTATTCAGCTGAAGAAATGTTAACATCTCACTCTAAATCTCTCAGTGGAGTCTCTGTTCCCTT  1031

Query  888  --CAGATATGCACAGCCT--GCTACTGC--------------AACCGCA-----------GCCACCGCTGCTGC  932
              |.||||| .|||| .|  |.||||||              ||   ||           ||||..|||     
Sbjct 1032  CTCTGATAT-AACAG-ATGGGTTACTGCTTGTTATAATTATTAA---CATTGTGGTATGGGCCAGGGCT-----  1095

Query  933  AGCCGCTGTAGCCGC-----TTAC------------------AGTGAC----GGTTATGGCAGGG--TGT--AC  975
              |.|.||    .||     ||||                  ||.|||    .||||.||.|.||  |||  ||
Sbjct 1096  --CGGGTG----GGCAAGATTTACTCCTCCTTTGGGCTGGGGAGGGACCAGTTGTTAGGGTATGGAATGTTAAC  1163

Query  976  ACA---GCCGAC---------CC---CTACCATGCCCTTGCCCCTGC-CGCTAGCTATGGAGTTGGCGCTGTGG  1033
            .||   |..|||         ||   .|||||.|.|.|||...|||| ||||  ||| |.|.|||..|||||| 
Sbjct 1164  TCAAGTGGTGACTGACTGTTTCCGTAATACCAGGTCGTTGTGGCTGCACGCT--CTA-GTAATTGAGGCTGTG-  1233

Query 1034  CGAGTTTA---TACCGAG---GTGGCTACAG-----------CCGATTTGCCCCCTAC------------  1074
                  ||   .||||||   |||| ||.||           |||.|.|   |||.|.            
Sbjct 1234  ------TACTTCACCGAGCTTGTGG-TAGAGCCTAGGGCAAACCGCTGT---CCCAAGAGAATGCTGGGA  1293

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