Nucleotide Global Alignment

Description

Query:
TRCN0000479002
Subject:
NR_073509.1
Aligned Length:
2571
Identities:
895
Gaps:
1646

Alignment

Query    1  ATGAGGCGACGAAGGAGGCGGGACGGCTTTTACCCAGCCCCGGACTTCCGAGACAGGGAAGCTGAGGACATGGC  74
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query   75  AGGAGTGTTTGACATAGACCTGGACCAGCCAGAGGACGCGGGCTCTGAGGATGAGCTGGAGGAGGGGGGTCAGT  148
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  149  TAAATGAAAGCATGGACCATGGGGGAGTTGGACCATATGAACTTGGCATGGAACATTGTGAGAAATTTGAAATC  222
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  223  TCAGAAACTAGTGTGAACAGAGGGCCAGAAAAAATCAGACCAGAATGTTTTGAGCTACTTCGGGTACTTGGTAA  296
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  297  AGGGGGCTATGGAAAGGTTTTTCAAGTACGAAAAGTAACAGGAGCAAATA-CTGGGAAAATATTTGCCATGAAG  369
                                                       .|||.|| |||||     |||          
Sbjct    1  -------------------------------------------ACAAGTAGCTGGG-----ATT----------  16

Query  370  GTGCTTAAAAAGGCAATGATAGTAAGAAATGCTAAAGATACAGCTCATACAAAAGCAGAACGGAATATTCTGGA  443
                    |.||||||||||||||.|||||||||||||||||||||||||||||||||||.|||||||||||||
Sbjct   17  --------ACAGGCAATGATAGTAGGAAATGCTAAAGATACAGCTCATACAAAAGCAGAATGGAATATTCTGGA  82

Query  444  GGAAGTAAAGCATCCCTTCATCGTGGATTTAATTTATGCCTTTCAGACTGGTGGAAAACTCTACCTCATCCTTG  517
            .||||||||||||||||||||||||||||||||||||||.||||||||||||||||||||||||||||||||||
Sbjct   83  AGAAGTAAAGCATCCCTTCATCGTGGATTTAATTTATGCTTTTCAGACTGGTGGAAAACTCTACCTCATCCTTG  156

Query  518  AGTATCTCAGTGGAGGAGAACTATTTATGCAGTTAGAAAGAGAGGGAATATTTATGGAAGACACTGCCT-----  586
            |||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||.|     
Sbjct  157  AGTATCTCAGT---GGAGAACTATTTATGCAGTTAGAAAGAGAGGGAATATTTATGGAAGACACTGCGTGGCCT  227

Query  587  --------------------------------------------------------------------------  586
                                                                                      
Sbjct  228  TTTCTAACACGGAAGCTGCATTTAAGAGCCTTAGGGATGAAGTGCCCTTTTGTGGAGGAGGCTCACTGAGCAGT  301

Query  587  --------------------------------------------------------------------------  586
                                                                                      
Sbjct  302  GTTGGAGGCTGTGTTTGTGGTCGTGCTGGCTGTGAAACTGCCTCAGTCCTTCCTCTAGGACACACCCTCTCCAT  375

Query  587  --------------------------------------------------------------------------  586
                                                                                      
Sbjct  376  CCTGGAATAATCTGCAGGATTGCAACATTGTTAAGCAGCCAGTATTGCGGTGCCTTGTGCTTTTCACATCCAGA  449

Query  587  ------------------------------GCTTTTACTTGGCAGAAATCTCCATGGCTTTGGGGCATTTACAT  630
                                          ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  450  CAGGGTTGATTCAGCCCTTTATTCTTTTGAGCTTTTACTTGGCAGAAATCTCCATGGCTTTGGGGCATTTACAT  523

Query  631  CAAAAGGGGATCATCTACAGAGACCTGAAGCCGGAGAATATCATGCTTAATCACCAAGGTCATGTGAAACTAAC  704
            ||||||||||||||||||||||||.||||||.||||||||||||||||||||||||||||||||||||||||||
Sbjct  524  CAAAAGGGGATCATCTACAGAGACTTGAAGCTGGAGAATATCATGCTTAATCACCAAGGTCATGTGAAACTAAC  597

Query  705  AGACTTTGGACTATGCAAAGAATCTATTCATGATGGAACAGTCACACACACATTTTGTGGAACAATAGAATACA  778
            |||||||||||||||||||||||| ||||||||.||||||||||||||||||||||||||||||||||||||||
Sbjct  598  AGACTTTGGACTATGCAAAGAATC-ATTCATGACGGAACAGTCACACACACATTTTGTGGAACAATAGAATACA  670

Query  779  TGGCCCCTGAAATCTTGATGAGAAGTGGCCACA-ATCGTGCTGTGGATTGGTGGAGTTTGGGAGCATTAATGTA  851
            ||     ||  |.||..|||..||      ||| |           |||||      ||.||||          
Sbjct  671  TG-----TG--AGCTGCATGTTAA------ACATA-----------ATTGG------TTTGGAG----------  704

Query  852  TGACATGCTGACTGGAGCACCCCCATTCACTGGGGAGAATAGAAAGAAAACAATTGACAAAATCCTCAAATGTA  925
                               ||.|||||.||||||||||||||||||||||||||||||||.|||||||||||||
Sbjct  705  -------------------CCTCCATTTACTGGGGAGAATAGAAAGAAAACAATTGACAACATCCTCAAATGTA  759

Query  926  AACTCAATTTGCCTCCCTACCTCACACAAGAAGCCAGAGATCTGCTTAAAAAGCTGCTGAAAAGAAATGCTGCT  999
            |||| ||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||||||
Sbjct  760  AACT-AATTTGCCTCCCTACCTCACACAAGAAGCCAGAGATCTGCTTAAAAAGCTACTGAAAAGAAATGCTGCT  832

Query 1000  TCTCGTCTGGGAGCTGGTCCTGGGGACGCTGGAGAAGTTCAAGCTCATCCATTCTTTAGACACATTAACTGGGA  1073
            ||||.|||||||||||||||||||||.||||||||.||||||||||||||||||||||||||||||||||||||
Sbjct  833  TCTCATCTGGGAGCTGGTCCTGGGGATGCTGGAGATGTTCAAGCTCATCCATTCTTTAGACACATTAACTGGGA  906

Query 1074  AGAACTTCTGGCTCGAAAGGTGGAGCCCCCCTTTAAACCTCTGTTGCAATCTGAAGAGGATGTAAGTCAGTTTG  1147
            ||||||||||||||||||||||||||||||.|||||||||||||||||||||||||||||||||||||||||||
Sbjct  907  AGAACTTCTGGCTCGAAAGGTGGAGCCCCCATTTAAACCTCTGTTGCAATCTGAAGAGGATGTAAGTCAGTTTG  980

Query 1148  ATTCCAAGTTTACACGTCAGACACCTGTCGACAGCCCAGATGACTCAACTCTCAGTGAAAGTGCCAATCAGGTC  1221
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||
Sbjct  981  ATTCCAAGTTTACACGTCAGACACCTGTCGACAGCCCAGATGACTCAACTCTCAGTGAAAGTGCCCATCAGGTC  1054

Query 1222  TTTCTGGGTTTTACATATGTGGCTCCATCTGTACTTGAAAGTGTGAAAGAAAAGTTTTCCTTTGAACCAAAAAT  1295
            ||||||||||||||.|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1055  TTTCTGGGTTTTACTTATGTGGCTCCATCTGTACTTG-AAGTGTGAAAGAAAAGTTTTCCTTTGAACCAAAAAT  1127

Query 1296  CCGATCACCTCGAAGATTTATTGGCAGCCCACGAACACCTGTCAG-------TACTGCT----ATGTGC-----  1353
            |||||||||||||||||||||||||||||||||||||||||||||       |.||.||    || |.|     
Sbjct 1128  CCGATCACCTCGAAGATTTATTGGCAGCCCACGAACACCTGTCAGCCCAATTTTCTCCTGGGGAT-TTCTGGGG  1200

Query 1354  --------------------------------------------------------------------------  1353
                                                                                      
Sbjct 1201  AAGAGGCGCTTCGGCCAGCACAGCAAATCCTCAGACACCTGTGGAATACCCAATGGAAACAAGTGGCACAGAGC  1274

Query 1354  --------------------------------------------------------------------------  1353
                                                                                      
Sbjct 1275  AGATGGATGTGACAACGAGTGGGGAAGCATTGGCACCACTTCCAATACGACAGCCGAACTCTGGGCCATACAAA  1348

Query 1354  --------------------------------------------------------------------------  1353
                                                                                      
Sbjct 1349  AAACAAGCTTTTCCCATGATCTCCAAACGGCCAGAGCACCTGCGTATGAATCTATGCCACAGCAATGCTTTTAA  1422

Query 1354  --------------------------------------------------------------------------  1353
                                                                                      
Sbjct 1423  TGAATTTAAGGCAAAAAAGGTGGAGAGGCCGATGTGTGAGCATCCTACAGGGTGAAACAAGACTCAAAGTGACA  1496

Query 1354  --------------------------------------------------------------------------  1353
                                                                                      
Sbjct 1497  ATTTCAGAGAGTCAGTGTCATTACATAGAACACTTTGGACAGAGGAAAAATAAACATGGATTTTAAAAAAATCA  1570

Query 1354  --------------------------------------------------------------------------  1353
                                                                                      
Sbjct 1571  ATCAATCGTGCAAAAAAACTTAAAGCAAAATAGTACTGCTGAACACTCAGGCACATCAATTAATTGTTTCCTCG  1644

Query 1354  --------------------------------------------------------------------------  1353
                                                                                      
Sbjct 1645  TGACATCTTCTCAACCTTATCAAGGATTTTCATGTTGATGACTCGAAACTGACAGTATTAAGGGTAGGATGTTG  1718

Query 1354  --------------------------------------------------------------------------  1353
                                                                                      
Sbjct 1719  CTTCTGAATCACTGTTGAGTTCTAACTGTGTCGAAGAAGGGTTATCCTTTCATTAGGCAAAGTACAAAATTGCC  1792

Query 1354  --------------------------------------------------------------------------  1353
                                                                                      
Sbjct 1793  TATAATACTTGCAACTAAGGACAAATTAGCATGCAAGCTTGGTCAAACTTTTTCCAGCAACATGGAATCAAAGA  1866

Query 1354  --------------------------------------------------------------------------  1353
                                                                                      
Sbjct 1867  CAAAAGAAACTTACCAATTGATGTTTTACGTGAACATAACCTGAATCTTTTTTTATATAAATATATATTTTTCA  1940

Query 1354  --------------------------------------------------------------------------  1353
                                                                                      
Sbjct 1941  AGTAGATTTTTGATTCAGCTCATTATGAAAAACATCCCAAACTTTAAAATGCGAAATTATTAGTTGGTGTGAAG  2014

Query 1354  --------------------------------------------------------------------------  1353
                                                                                      
Sbjct 2015  AAAGCCAAACAACTTCCGTTTCTTCTCTTGGTGAAATAATAAAATGCAAATGAATCATTGTTAACCACATCTGT  2088

Query 1354  -------------------------------------------------------  1353
                                                                   
Sbjct 2089  GGCTCGTTCGAGGGACTGGGGTGGACCTGGGGTTTATTTTCAGTAACCCAGCTGC  2143

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.