Nucleotide Global Alignment

Description

• Query: TRCN0000479005
• Subject: XR_001751811.2
• Aligned Length: 4663
• Identities: 2396
• Gaps: 2266

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ATCACTTCACAGTTACATTTGGCAGGCAGGCGGGCTCGCACGCCGGAGCGCTCAGCCCAGAATTAGTGGATTTA  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  TTTGGAATCTCCCTGCCTCCTCCAAGCTCCGCCGCCGCCGCCGGCTTGTGCATAGACGGTAGCGTCAAGACACC  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  AGCTGCACTTTGGGTTGCGGACACCCAGAGCCCAGCGCGCCCGCCCTGCGTCTCCGCACCAAGCCCTGTAGCTC  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  CGAGAGGCATGAACGGAATCCGGAGGCGCCTGCCTAGCGAGCGAGGACCGGTCGGCGCTTGCCGCCCTCGGGAG  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  CTAACCCCGAGCACCTCCAGCCATTTGTGAACCTGGAGGCTTGACATTCGCCAGCGCAGGGCCCCACAAGAGAA  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  ATTTCAATGAAAAGAAAAGCCAATGGATTGTGGTCTTAGAAAAGCTGCTTAGATGATGTCTGTTTCCCGTGCTA  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  TAGACACGTGGCAGAGCTGTAAGTAAATGCTCGGCACTGCATGATGAATTGGATGGCTGCAGACCGGAGACAAA  518

Query    1  ------------------------------------------------ATGCCAGAACGGCTAGCGGAAATGCT  26
                                                            ||||||||||||||||||||||||||
Sbjct  519  AAAAATAATTGTCTCATTTTCGTGGTGATTTGCTTAACTGGTGGGACCATGCCAGAACGGCTAGCGGAAATGCT  592

Query   27  CTTGGATCTCTGGACTCCATTAATAATATTATGGATTACTCTTCCCCCTTGCATTTACATGGCTCCGATGAATC  100
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  CTTGGATCTCTGGACTCCATTAATAATATTATGGATTACTCTTCCCCCTTGCATTTACATGGCTCCGATGAATC  666

Query  101  AGTCTCAAGTTTTAATGAGTGGATCCCCTTTGGAACTAAACAGTCTGGGTGAAGAACAGCGAATTTTGAACCGC  174
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  AGTCTCAAGTTTTAATGAGTGGATCCCCTTTGGAACTAAACAGTCTGGGTGAAGAACAGCGAATTTTGAACCGC  740

Query  175  TCCAAAAGAGGCTGGGTTTGGAATCAAATGTTTGTCCTGGAAGAGTTTTCTGGACCTGAACCGATTCTTGTTGG  248
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  TCCAAAAGAGGCTGGGTTTGGAATCAAATGTTTGTCCTGGAAGAGTTTTCTGGACCTGAACCGATTCTTGTTGG  814

Query  249  CCGGCTACACACAGACCTGGATCCTGGGAGCAAAAAAATCAAGTATATCCTATCAGGTGATGGAGCTGGGACCA  322
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  CCGGCTACACACAGACCTGGATCCTGGGAGCAAAAAAATCAAGTATATCCTATCAGGTGATGGAGCTGGGACCA  888

Query  323  TATTTCAAATAAATGATGTAACTGGAGATATCCATGCTATAAAAAGACTTGACCGGGAGGAAAAGGCTGAGTAT  396
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  TATTTCAAATAAATGATGTAACTGGAGATATCCATGCTATAAAAAGACTTGACCGGGAGGAAAAGGCTGAGTAT  962

Query  397  ACCCTAACAGCTCAAGCAGTGGACTGGGAGACAAGCAAACCTCTGGAGCCTCCTTCTGAATTTATTATTAAAGT  470
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  963  ACCCTAACAGCTCAAGCAGTGGACTGGGAGACAAGCAAACCTCTGGAGCCTCCTTCTGAATTTATTATTAAAGT  1036

Query  471  TCAAGACATCAATGACAATGCACCAGAGTTTCTTAATGGACCCTATCATGCTACTGTGCCAGAAATGTCCATTT  544
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037  TCAAGACATCAATGACAATGCACCAGAGTTTCTTAATGGACCCTATCATGCTACTGTGCCAGAAATGTCCATTT  1110

Query  545  TGGGTACATCTGTCACTAACGTCACTGCGACCGACGCTGATGACCCAGTTTATGGAAACAGTGCAAAGTTGGTT  618
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111  TGGGTACATCTGTCACTAACGTCACTGCGACCGACGCTGATGACCCAGTTTATGGAAACAGTGCAAAGTTGGTT  1184

Query  619  TATAGTATATTGGAAGGGCAGCCTTATTTTTCCATTGAGCCTGAAACAGCTATTATAAAAACTGCCCTTCCCAA  692
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185  TATAGTATATTGGAAGGGCAGCCTTATTTTTCCATTGAGCCTGAAACAGCTATTATAAAAACTGCCCTTCCCAA  1258

Query  693  CATGGACAGAGAAGCCAAGGAGGAGTACCTGGTTGTTATCCAAGCCAAAGATATGGGTGGACACTCTGGTGGCC  766
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259  CATGGACAGAGAAGCCAAGGAGGAGTACCTGGTTGTTATCCAAGCCAAAGATATGGGTGGACACTCTGGTGGCC  1332

Query  767  TGTCTGGGACCACGACACTTACAGTGACTCTTACTGATGTTAATGACAATCCTCCAAAATTTGCACAGAGCCTG  840
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333  TGTCTGGGACCACGACACTTACAGTGACTCTTACTGATGTTAATGACAATCCTCCAAAATTTGCACAGAGCCTG  1406

Query  841  TATCACTTCTCAGTACCGGAAGATGTGGTTCTTGGCACTGCAATAGGAAGGGTGAAGGCCAATGATCAGGATAT  914
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407  TATCACTTCTCAGTACCGGAAGATGTGGTTCTTGGCACTGCAATAGGAAGGGTGAAGGCCAATGATCAGGATAT  1480

Query  915  TGGTGAAAATGCACAGTCATCATATGATATCATCGATGGAGATGGAACAGCACTTTTTGAAATCACTTCTGATG  988
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481  TGGTGAAAATGCACAGTCATCATATGATATCATCGATGGAGATGGAACAGCACTTTTTGAAATCACTTCTGATG  1554

Query  989  CCCAGGCCCAGGATGGCATTATAAGGCTAAGAAAACCTCTGGACTTTGAGACCAAAAAATCCTATACGCTAAAG  1062
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555  CCCAGGCCCAGGATGGCATTATAAGGCTAAGAAAACCTCTGGACTTTGAGACCAAAAAATCCTATACGCTAAAG  1628

Query 1063  GTAGAGGCAGCCAATGTCCATATTGACCCACGCTTCAGTGGCAGGGGGCCCTTTAAAGACACGGCGACAGTCAA  1136
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629  GTAGAGGCAGCCAATGTCCATATTGACCCACGCTTCAGTGGCAGGGGGCCCTTTAAAGACACGGCGACAGTCAA  1702

Query 1137  AATCGTGGTTGAAGATGCTGATGAGCCTCCGGTCTTCTCTTCACCGACTTACCTACTTGAAGTTCATGAAAATG  1210
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703  AATCGTGGTTGAAGATGCTGATGAGCCTCCGGTCTTCTCTTCACCGACTTACCTACTTGAAGTTCATGAAAATG  1776

Query 1211  CTGCTCTAAACTCCGTGATTGGGCAAGTGACTGCTCGTGACCCTGATATCACTTCCAGTCCTATAAGGTTTTCC  1284
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777  CTGCTCTAAACTCCGTGATTGGGCAAGTGACTGCTCGTGACCCTGATATCACTTCCAGTCCTATAAGGTTTTCC  1850

Query 1285  ATCGACCGGCACACTGACCTGGAGAGGCAGTTCAACATTAATGCAGACGATGGGAAGATAACGCTGGCAACACC  1358
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1851  ATCGACCGGCACACTGACCTGGAGAGGCAGTTCAACATTAATGCAGACGATGGGAAGATAACGCTGGCAACACC  1924

Query 1359  ACTTGACAGAGAATTAAGTGTATGGCACAACATAACAATCATTGCTACTGAAATTAGGAACCACAGTCAGATAT  1432
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1925  ACTTGACAGAGAATTAAGTGTATGGCACAACATAACAATCATTGCTACTGAAATTAGGAACCACAGTCAGATAT  1998

Query 1433  CACGAGTACCTGTTGCTATTAAAGTGCTGGATGTCAATGACAACGCCCCTGAATTCGCATCCGAATATGAGGCA  1506
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1999  CACGAGTACCTGTTGCTATTAAAGTGCTGGATGTCAATGACAACGCCCCTGAATTCGCATCCGAATATGAGGCA  2072

Query 1507  TTTTTATGTGAAAATGGAAAACCCGGCCAA--------------------------------------------  1536
            ||||||||||||||||||||||||||||||                                            
Sbjct 2073  TTTTTATGTGAAAATGGAAAACCCGGCCAAATGCCCGTAAATACTCAAATTGGAAAGAAACCTGTAATTGCCCA  2146

Query 1537  ---------------------------------------------------------------GTCATTCAAAC  1547
                                                                           |||||||||||
Sbjct 2147  GTGGATATTTCAAATACACTTAACTTTGCTATTTCAAGCCACAGACACCAAATGGACACAAAGGTCATTCAAAC  2220

Query 1548  TGTTAGCGCCATGGACAAAGATGATCCCAAAAACGGACATTATTTCTTATACAGTCTCCTTCCAGAAATGGTCA  1621
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2221  TGTTAGCGCCATGGACAAAGATGATCCCAAAAACGGACATTATTTCTTATACAGTCTCCTTCCAGAAATGGTCA  2294

Query 1622  ACAATCCGAATTTCACCATCAAGAAAAATGAAGATAATTCCCTCAGTATTTTGGCAAAGCATAATGGATTCAAC  1695
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2295  ACAATCCGAATTTCACCATCAAGAAAAATGAAGATAATTCCCTCAGTATTTTGGCAAAGCATAATGGATTCAAC  2368

Query 1696  CGCCAGAAGCAAGAAGTCTATCTTTTACCAATCATAATCAGTGATAGTGGAAATCCTCCACTGAGCAGCACTAG  1769
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2369  CGCCAGAAGCAAGAAGTCTATCTTTTACCAATCATAATCAGTGATAGTGGAAATCCTCCACTGAGCAGCACTAG  2442

Query 1770  CACCTTGACAATCAGGGTCTGTGGCTGCAGCAATGACGGTGTCGTCCAGTCTTGCAATGTCGAAGCTTATGTCC  1843
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2443  CACCTTGACAATCAGGGTCTGTGGCTGCAGCAATGACGGTGTCGTCCAGTCTTGCAATGTCGAAGCTTATGTCC  2516

Query 1844  TTCCAATTGGACTCAGTATGGGCGCCTTAATTGCCATATTAGCATGCATCATTTTGCTGTTAGTCATCGTGGTG  1917
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2517  TTCCAATTGGACTCAGTATGGGCGCCTTAATTGCCATATTAGCATGCATCATTTTGCTGTTAGTCATCGTGGTG  2590

Query 1918  CTGTTTGTAACTCTACGGCGGCATAAAAATGAACCATTAATTATCAAAGATGATGAAGACGTTCGAGAAAACAT  1991
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2591  CTGTTTGTAACTCTACGGCGGCATAAAAATGAACCATTAATTATCAAAGATGATGAAGACGTTCGAGAAAACAT  2664

Query 1992  CATTCGCTACGATGATGAAGGAGGAGGGGAGGAGGACACAGAGGCTTTTGACATTGCAACTTTACAAAATCCAG  2065
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2665  CATTCGCTACGATGATGAAGGAGGAGGGGAGGAGGACACAGAGGCTTTTGACATTGCAACTTTACAAAATCCAG  2738

Query 2066  ATGGAATTAATGGATTTTTACCCCGTAAGGATATTAAACCAGATTTGCAGTTTATGCCAAGGCAAGGGCTTGCT  2139
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2739  ATGGAATTAATGGATTTTTACCCCGTAAGGATATTAAACCAGATTTGCAGTTTATGCCAAGGCAAGGGCTTGCT  2812

Query 2140  CCAGTTCCAAATGGTGTTGATGTCGATGAATTTATAAATGTAAGGCTGCATGAGGCAGATAATGATCCCACAGC  2213
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.||
Sbjct 2813  CCAGTTCCAAATGGTGTTGATGTCGATGAATTTATAAATGTAAGGCTGCATGAGGCAGATAATGATCCCACGGC  2886

Query 2214  CCCGCCATATGACTCCATTCAGATATATGGCTATGAAGGCCGAGGGTCAGTGGCTGGCTCCCTCAGCTCCTTGG  2287
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2887  CCCGCCATATGACTCCATTCAGATATATGGCTATGAAGGCCGAGGGTCAGTGGCTGGCTCCCTCAGCTCCTTGG  2960

Query 2288  AGTCCACCACATCAGACTCAGACCAGAATTTTGACTACCTCAGTGACTGGGGTCCCCGCTTTAAGAGACTGGGC  2361
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2961  AGTCCACCACATCAGACTCAGACCAGAATTTTGACTACCTCAGTGACTGGGGTCCCCGCTTTAAGAGACTGGGC  3034

Query 2362  GAACTCTACTCTGTTGGTGAAAGTGACAAAGAAACT--------------------------------------  2397
            ||||||||||||||||||||||||||||||||||||                                      
Sbjct 3035  GAACTCTACTCTGTTGGTGAAAGTGACAAAGAAACTTGACAGTGGATTATAAATAAATCACTGGAACTGAGCAT  3108

Query 2398  --------------------------------------------------------------------------  2397
                                                                                      
Sbjct 3109  TCTGTAATATTCTAGGGTCACTCCCCTTAGATACAACCAATGTGGCTATTTGTTTTAGAGGCAAGTTTAGCACC  3182

Query 2398  --------------------------------------------------------------------------  2397
                                                                                      
Sbjct 3183  AGTCATCTATAAACTCAACCACATTTTAATGTTGAACCAAAAAAAGATAATAAAATAAAAAAGTATATGTTAGG  3256

Query 2398  --------------------------------------------------------------------------  2397
                                                                                      
Sbjct 3257  AGGTTATAAATCTTGTGGAGTGTGAATTAAGTATGTGGAGTGTCTAGAAGTCCTTGGATATTTGATATTTACCT  3330

Query 2398  --------------------------------------------------------------------------  2397
                                                                                      
Sbjct 3331  GACCACCACAGACAAAGATTGGGATCCTGGCTAATCCTTAGATAAATGGTTTAAATAGAGGAAAAAATCATAAT  3404

Query 2398  --------------------------------------------------------------------------  2397
                                                                                      
Sbjct 3405  TAAAAGGTGCTTTCTTAGAAAAAAAAATACGGACCTGCAAGGAATCTGCTGCTGATATGTGTCTTCTGCAAGGA  3478

Query 2398  --------------------------------------------------------------------------  2397
                                                                                      
Sbjct 3479  TTTTTATGAATGCAAATGGTTTTTTCCCCTTCACCAATAAGGATCCCGCCACAAATGATAAAGCAATACTTGGT  3552

Query 2398  --------------------------------------------------------------------------  2397
                                                                                      
Sbjct 3553  CTGCTGTACATTATAACTTTTTGGAGTTTTGAGAGGCCTCCTAGATTATACAGTACGGTGACCACACATTGTAC  3626

Query 2398  --------------------------------------------------------------------------  2397
                                                                                      
Sbjct 3627  ATAATTGTTGGCCCCACTCACTAGAGACTGAATAGCATCTTTAAATATTGTGTCGAGCCTTAAAATATTCACAT  3700

Query 2398  --------------------------------------------------------------------------  2397
                                                                                      
Sbjct 3701  GTTCGTAATCCATTCCAGGGTGGGGCTTGCCAATTCAGTGGTGGGAGGAGAGAAATCCCATTCAAACATGCTTG  3774

Query 2398  --------------------------------------------------------------------------  2397
                                                                                      
Sbjct 3775  TTTTCTAGAAGCAGGATTCCTCGTTCCCTCCTCTTCATCTTCTTCCACAAGGACACAAAGATAAACTGTATCAC  3848

Query 2398  --------------------------------------------------------------------------  2397
                                                                                      
Sbjct 3849  ACAGTGGACTACATAAGAGACAGATGGTTTTATTGCTAGCGCGTGAATTTATTTGTTTAATCCTCGAAATAAAT  3922

Query 2398  --------------------------------------------------------------------------  2397
                                                                                      
Sbjct 3923  ATTTTATTGATGTCCATTAATGCTTTTATTTATTAAGGTCGGTAATCTATAGATTAAGGGGATATATGGGAAAA  3996

Query 2398  --------------------------------------------------------------------------  2397
                                                                                      
Sbjct 3997  AACTAAATTATATCCATTAATAATCCTTTAGATTGTTTTATATAAATATATATACAATGAATGTTTAATACATG  4070

Query 2398  --------------------------------------------------------------------------  2397
                                                                                      
Sbjct 4071  TACATTTTGATGAGATGAGTATGGCAGGCAATATTATCGAAAGGAGAGCTAATAGTCTCTTTAGAGTAGAAAGT  4144

Query 2398  --------------------------------------------------------------------------  2397
                                                                                      
Sbjct 4145  GTTATTGTAACTGGAGATGGCAGGAACAGCATCTTCCCAGACAAACTTTTGGACTGTTTTCTATTTTGTTCATA  4218

Query 2398  --------------------------------------------------------------------------  2397
                                                                                      
Sbjct 4219  ATCCTAGTATTTGGTGTTTTTACTACAAGCACAAACATCCTAAAGTATATTGATTCCTGTGAATATTTAAACTC  4292

Query 2398  --------------------------------------------------------------------------  2397
                                                                                      
Sbjct 4293  TAGACTTTTAGATACCTACATCATGCCCTGCCCAATAAACATGCTTCAATTTACCCCCACAGTTTTAGAGCAGG  4366

Query 2398  --------------------------------------------------------------------------  2397
                                                                                      
Sbjct 4367  AACTGATTTGTACATAATTTCACTGTTTACGTTTTTAGCACTCCTATCCCTGATCTTCATGGTGATGCACAGAA  4440

Query 2398  --------------------------------------------------------------------------  2397
                                                                                      
Sbjct 4441  TGTCTTAGACTCCAAAAAGGAACAGCACTAGAAGATGTGAGCATATTTAATTTGTAATGCAAACCTGCCATTTA  4514

Query 2398  --------------------------------------------------------------------------  2397
                                                                                      
Sbjct 4515  GGAGTAGAAAATGTATGATAAAACTCAAGTATTACATGCAGATCATTTTAATTTTCTACTTTGCTTTAATGCAA  4588

Query 2398  --------------------------------------------------------------------------  2397
                                                                                      
Sbjct 4589  TATTGTTTATTCACTCCATGTATTGTATTCAGAGAAACTCCTGTATTGTTTCCTACTTTGTGAAATATATTTTT  4662

Query 2398  -  2397
             
Sbjct 4663  A  4663