Nucleotide Global Alignment
Description
- Query:
- TRCN0000479140
- Subject:
- NR_047639.1
- Aligned Length:
- 5683
- Identities:
- 401
- Gaps:
- 5236
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GCTCATCGTTTGTTGTTTAGATAATATCATGAACTGATAAATGCAGTTGCCACGTTGATTCCCTAGGGCCTGGC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 TTACCGACTGAGGTCATAAGATATTATGCCTTCTCTTTAGACTTGGTCAGTGGAGAGGAAATGGGCAAAGAACC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 AGCCTATGGAGGTGACAAGGCCTTAGGGCCAAAAGTCTTGAGGGTGAAGGTTTAGGGCCTGCGCAGCTTCCCTG 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 CCATGCCCCGCAAGGTCTCGCATTCGCAAGGCTTGTGACAGTGGGAGCCTCATTACGGACTCTCCTAAAGTCCA 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 TGGTGTCCTCTTTTCGCATTTGCGCCCCGTGGGTGATGCCCGATGCCGCCCTTCCCATCGCTCTCTTCCCCTTC 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 AAGCGTATCGCAACTGCAAAAACACCCAGCACAGACACTCCATTTTCTATCTTAATGCATTTAACTAGCACAAC 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 CTACAGGTTGTTCCATCCCAGAGACTACCCTTTTCTCCATAGACGTGACCATCAACCAACCAGCGGTCAGAATC 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 AGTCAGCCTCTGTCATGTTCCTAGGTCCTTGGCGAACTGGCTGGGCGGGGTCCCAGCAGCCTAGGAGTACAGTG 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 GAGCAATGCCTGACGTAAGTCAACAAAGATCACGTGAGACGAATCAGTCGCCTAGATTGGCTACAACTAAGTGG 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 TTGGGAGCGGGGAGGTCGCGGCGGCTGCGTGGGGTTCGCCCGTGACACAATTACAACTTTGTGCTGGTGCTGGC 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 AAAGTTTGTGATTTTAAGAAATTCTGCTGTGCTCTCCAGCACTGCGAGCTTCTGCCTTCCCTGTAGTTTCCCAG 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 ATGTGATCCAGGTAGCCGAGTTCCGCTGCCCGTGCTTCGGTAGCTTAAGTCTTTGCCTCAGCTTTTTTCCTTGC 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 AGCCGCTGAGGAGGCGATAAAATTGGCGTCACAGTCTCAAGCAGCGATTGAAGGCGTCTTTTCAACTACTCGAT 962
Query 1 -------------------------------------------ATGAAATCGTGCGCAGTGTCGCTCACTACCG 31
||||||||.||||||||||||||||||||||
Sbjct 963 TAAGGTTGGGTATCGTCGTGGGACTTGGAAATTTGTTGTTTCCATGAAATCCTGCGCAGTGTCGCTCACTACCG 1036
Query 32 CCGCTGTTGCCTTCGGTGATGAGGCAAAGAAAATGGCGGAAGGAAAAGCGAGCCGCGAGAGTGAAGAGGAGTCT 105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 CCGCTGTTGCCTTCGGTGATGAGGCAAAGAAAATGGCGGAAGGAAAAGCGAGCCGCGAGAGTGAAGAGGAGTCT 1110
Query 106 GTTAGCCTGACAGTCGAGGAAAGGGAGGCGCTTGGTGGCATGGACAGCCGTCTCTTCGGGTTCGTGAGGCTTCA 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 GTTAGCCTGACAGTCGAGGAAAGGGAGGCGCTTGGTGGCATGGACAGCCGTCTCTTCGGGTTCGTGAGGCTTCA 1184
Query 180 TGAAGATGGCGCCAGAACGAAGACCCTACTAGGCAAGG---------------------------TAAAAGC-- 224
|||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1185 TGAAGATGGCGCCAGAACGAAGACCCTACTAGGCAAGGCTGTTCGCTGCTACGAATCTTTAATCTTAAAAGCTG 1258
Query 225 AACCAGACGCAAAG------------TCTTT---------GGTCCGCACTT----------------------- 254
| |.|.|||| ||||| ||| |||||
Sbjct 1259 A-----AGGAAAAGTGGAGTCTGACTTCTTTTGCCAATTAGGT---CACTTCAACCTCTTGTTGGAAGATTATT 1324
Query 255 -------------TGC------------------TCTACCAAGGC----------------CCCGCGTTCCT-T 280
||| |.||| |||| .|.|||||..| |
Sbjct 1325 CAAAAGCATTATCTGCATATCAGAGATATTACAGTTTAC--AGGCTGACTACTGGAAGAATGCTGCGTTTTTAT 1396
Query 281 ACCGCC----------------------CA--------------GCCAGTA------------------TTTAT 300
|..||| || ||.|.|| |||||
Sbjct 1397 ATGGCCTTGGTTTGGTCTACTTCTACTACAATGCATTTCATTGGGCAATTAAAGCATTTCAAGATGTCCTTTAT 1470
Query 301 TTTG------GCTCTGCTCCATGGCCAAGG-----------------GGTCGGA-----AAAGTG--------- 337
.||| |||.|..||.| ||||||| ||.|..| ||||||
Sbjct 1471 GTTGACCCCAGCTTTTGTCGA--GCCAAGGAAATTCATTTACGACTTGGGCTCATGTTCAAAGTGAACACAGAC 1542
Query 338 ---------------------TTTC---TTGCCT---TTG-CTG---TCCCCGTACT----------CTGGAAT 370
|||| |.|||| ||| ||| |||..||||| |||.|||
Sbjct 1543 TACAAGTCTAGTTTAAAGCATTTTCAGTTAGCCTTGATTGACTGTAATCCATGTACTTTGTCCAATGCTGAAAT 1616
Query 371 ---ACTTC-----GCCCCTTGCT-------CCA-----GACTCCCTTCTACTCTG--------AGGAAAAAAA- 415
|.||| ||||.||..| ||| || |.|.|..||.|.|| ||||.|.|||
Sbjct 1617 TCAATTTCATATTGCCCATTTGTATGAAACCCAGGTTGGA-TGCATCATAATATGGATCTAGTAGGAGACAAAG 1689
Query 416 ----AAA---------------TCGG----------ACGCTTTGG-----GACCGGGCTAAACCGGGTCTACAC 455
||| ||.| |..|||||| ||.| ||||..|.|| |
Sbjct 1690 CCACAAAGGAAAGCTATGCTATTCAGTATCTCCAAAAGTCTTTGGAGGCAGATC---CTAATTCTGG------C 1754
Query 456 CACATGCCTGTTACTT---------------------------------------------------------- 471
|| || |.||.||.||
Sbjct 1755 CA-AT-CGTGGTATTTTCTTGGAAGGTGTTATTCAAGTATTGGGAAAGTTCAGGATGCCTTTATATCTTACAGG 1826
Query 472 -------------------------------------------------------------------------- 471
Sbjct 1827 CAATCTATTGATAAATCAGAAGCAAGTGCAGATACATGGTGTTCAATAGGTGTGTTGTATCAGCAGCAAAATCA 1900
Query 472 -------------------------------------------------------------------------- 471
Sbjct 1901 GCCTATGGATGCTTTACAGGCATATATTTGTGCTGTACAATTGGACCATGGGCATGCCGCAGCCTGGATGGACC 1974
Query 472 -------------------------------------------------------------------------- 471
Sbjct 1975 TAGGTACTCTCTATGAATCCTGCAATCAACCTCAAGATGCCATTAAATGCTACCTAAATGCAGCTAGAAGCAAA 2048
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2049 CGTTGTAGTAATACCTCTACGCTTGCTGCAAGAATTAAATTTCTACAGAATGGTTCTGATAACTGGAATGGTGG 2122
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2123 CCAGAGTCTTTCACATCATCCAGTACAGCAAGTTTATTCGTTGTGTTTGACACCACAGAAATTACAGCACTTGG 2196
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2197 AACAACTGCGAGCAAATAGAGATAATTTAAATCCAGCACAGAAGCATCAGCTGGAACAGTTAGAAAGTCAGTTT 2270
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2271 GTCTTAATGCAGCAAATGAGACACAAAGAAGTTGCTCAGGTACGAACTACTGGAATTCATAACGGGGCCATAAC 2344
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2345 TGATTCATCACTGCCTACAAACTCTGTCTCTAATCGACAACCACATGGTGCTCTGACCAGAGTATCTAGCGTCT 2418
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2419 CTCAGCCTGGAGTTCGCCCTGCTTGTGTTGAAAAACTTTTGTCCAGTGGAGCTTTTTCTGCAGGCTGTATTCCT 2492
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2493 TGTGGCACATCAAAAATTCTAGGAAGTACAGACACTATCTTGCTAGGCAGTAATTGTATAGCAGGAAGTGAAAG 2566
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2567 TAATGGAAATGTGCCTTACCTGCAGCAAAATACACACACTCTACCTCATAATCATACAGACCTGAACAGCAGCA 2640
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2641 CAGAAGAGCCATGGAGAAAACAGCTATCTAACTCCGCTCAGGAATCCAGGTAAAAATGGCTTGTCTAATAGCTG 2714
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2715 CATTTTGTTAGATAAATGTCCACCTCCAAGACCACCAACTTCACCATACCCACCCTTGCCAAAGGACAAGTTGA 2788
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2789 ATCCACCCACACCTAGTATTTACTTGGAAAATAAACGTGATGCTTTCTTTCCTCCATTACATCAATTTTGTACA 2862
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2863 AATCCAAAAAACCCTGTTACAGTAATACGTGGCCTTGCTGGAGCTCTTAAATTAGATCTTGGACTTTTCTCTAC 2936
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2937 CAAAACTTTGGTAGAAGCTAACAATGAACATATGGTAGAAGTGAGGACACAGTTGCTGCAACCAGCAGATGAAA 3010
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3011 ACTGGGATCCCACTGGAACAAAGAAAATCTGGCGTTGTGAAAGCAATAGATCTCATACTACAATTGCCAAATAC 3084
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3085 GCACAATACCAGGCTTCCTCCTTCCAGGAATCATTGAGAGAAGAAAATGAGAAAAGAACACAACACAAAGATCA 3158
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3159 TTCAGATAACGAATCCACATCTTCAGAGAATTCTGGAAGGAGAAGGAAAGGACCTTTTAAAACCATAAAATTTG 3232
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3233 GGACCAACATTGACCTCTCTGATAACAAAAAGTGGAAGTTGCAGTTACATGAACTGACTAAACTTCCTGCTTTT 3306
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3307 GCGCGTGTGGTGTCAGCAGGAAATCTTCTAACCCATGTTGGGCATACCATTCTGGGCATGAATACAGTACAACT 3380
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3381 GTATATGAAAGTTCCAGGGAGTCGGACACCAGGTCACCAAGAAAATAACAACTTCTGCTCTGTTAACATAAATA 3454
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3455 TTGGTCCAGGAGATTGTGAATGGTTTGTTGTACCTGAAGATTATTGGGGTGTTCTGAATGACTTCTGTGAAAAA 3528
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3529 AATAATTTGAATTTTTTAATGAGTTCTTGGTGGCCCAACCTTGAAGATCTTTATGAAGCAAATGTCCCTGTGTA 3602
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3603 TAGATTTATTCAGCGACCTGGAGATTTGGTCTGGATAAATGCAGGCACTGTGCATTGGGTTCAAGCTGTTGGCT 3676
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3677 GGTGCAATAACATTGCCTGGAATGTTGGTCCACTTACAGCCTGCCAGTATAAATTGGCAGTGGAACGGTATGAA 3750
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3751 TGGAACAAATTGAAAAGTGTGAAGTCACCAGTACCCATGGTGCATCTTTCCTGGAATATGGCACGAAATATCAA 3824
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3825 AGTCTCAGATCCAAAGCTTTTTGAAATGATTAAGTATTGTCTTTTGAAAATTCTGAAGCAATATCAGACATTGA 3898
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3899 GAGAAGCTCTTGTTGCAGCAGGAAAAGAGGTTATATGGCATGGGCGGACAAATGATGAACCAGCTCATTACTGT 3972
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3973 AGCATTTGTGAGGTGGAGGTTTTTAATCTGCTTTTTGTCACTAATGAAAGCAATACTCAAAAAACCTACATAGT 4046
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4047 ACATTGCCATGATTGTGCACGAAAAACAAGCAAAAGTTTGGAAAATTTTGTGGTGCTCGAACAGTACAAAATGG 4120
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4121 AGGACCTAATCCAAGTTTATGATCAATTTACACTAGCTCTTTCATTATCATCCTCATCTTGATATAGTTCCATG 4194
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4195 AATATTAAATGAGATTATTTCTGCTCTTCAGGAAATTTCTGCACCACTGGTTTTGTAGCTGTTTCATAAAACTG 4268
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4269 TTGACTAAAAGCTATGTCTATGCAACCTTCCAAGAATAGTATGTCAAGCAACTGGACACAGTGCTGCCTCTGCT 4342
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4343 TCAGGACTTAACATGCTGATCCAGCTGTACTTCAGAAAAATAATATTAATCATATGTTTTGTGTACGTATGACA 4416
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4417 AACTGTCAAAGTGACACAGAATACTGATTTGAAGATAGCCTTTTTTATGTTTCTCTATTTCTGGGCTGATGAAT 4490
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4491 TAATATTCATTTGTATTTTAACCCTGCAGAATTTTCCTTAGTTAAAAACACTTTCCTAGCTGGTCATTTCTTCA 4564
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4565 TAAGATAGCAAATTTAAATCTCTCCTCGATCAGCTTTTAAAAAATGTGTACTATTATCTGAGGAAGTTTTTTAC 4638
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4639 TGCTTTATGTTTTTGTGTGTTTTGAGGCCATGATGATTACATTTGTGGTTCCAAAATAATTTTTTTAAATATTA 4712
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4713 ATAGCCCATATACAAAGATAATGGATTGCACATAGACAAAGAAATAAACTTCAGATTTGTGATTTTTGTTTCTA 4786
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4787 AACTTGATACAGATTTACACTATTTATAAATACGTATTTATTGCCTGAAAATATTTGTGAATGGAATGTTGTTT 4860
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4861 TTTTCCAGACGTAACTGCCATTAAATACTAAGGAGTTCTGTAGTTTTAAACACTACTCCTATTACATTTTATAT 4934
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4935 GTGTAGATAAAACTGCTTAGTATTATACAGAAATTTTTATTAAAATTGTTAAATGTTTAAAGGGTTTCCCAATG 5008
Query 472 -------------------------------------------------------------------------- 471
Sbjct 5009 TTTGAGTTTAAAAAAGACTTTCTGAAAAAATCCACTTTTTGTTCATTTTCAAACCTAATGATTATATGTATTTT 5082
Query 472 -------------------------------------------------------------------------- 471
Sbjct 5083 ATATGTGTGTGTATGTGTACACACATGTATAATATATACAGAAACCTCGATATATAATTGTATAGATTTTAAAA 5156
Query 472 -------------------------------------------------------------------------- 471
Sbjct 5157 GTTTTATTTTTTACATCTATGGTAGTTTTTGAGGTGCCTATTATAAAGTATTACGGAAGTTTGCTGTTTTTAAA 5230
Query 472 -------------------------------------------------------------------------- 471
Sbjct 5231 GTAAATGTCTTTTAGTGTGATTTATTAAGTTGTAGTCACCATAGTGATAGCCCATAAATAATTGCTGGAAAATT 5304
Query 472 -------------------------------------------------------------------------- 471
Sbjct 5305 GTATTTTATAACAGTAGAAAACATATAGTCAGTGAAGTAAATATTTTAAAGGAAACATTATATAGATTTGATAA 5378
Query 472 -------------------------------------------------------------------------- 471
Sbjct 5379 ATGTTGTTTATAATTAAGAGTTTCTTATGGAAAAGAGATTCAGAATGATAACCTCTTTTAGAGAACAAATAAGT 5452
Query 472 -------------------------------------------------------------------------- 471
Sbjct 5453 GACTTATTTTTTTAAAGCTAGATGACTTTGAAATGCTATACTGTCCTGCTTGTACAACATGGTTTGGGGTGAAG 5526
Query 472 -------------------------------------------------------------------------- 471
Sbjct 5527 GGGAGGAAAGTATTAAAAAATCTATATCGCTAGTAAATTGTAATAAGTTCTATTAAAACTTGTATTTCATATGA 5600
Query 472 ----------------------------------------------------------- 471
Sbjct 5601 AAAATTTGCTAATTTAATATTAACTCATTTGATAATAATACTTGTCTTTTCTACCTCTC 5659
