Nucleotide Global Alignment

Description

Query:
TRCN0000479556
Subject:
XR_001782861.1
Aligned Length:
3959
Identities:
1217
Gaps:
2549

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  TTTATTTTTCTATTTTATTTTTTTAAGTGAGACAAAGAACATGAATTTGGATGGCACGTTGGCTGGAATAAGAA  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  TAGTCCCCGTAGGCTCATATATCCGAACGCTTAGTCATCAGGGAATAGCACTATTTGAGGAATTAGGACTTAAG  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  AGGTGTGACCTTGTTGGAGGAAGTAAGTCACTGACAGTGGGCTTTGGGTTTTAAAAAGTCGATAAGGACAGCAG  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  GAGTTAGGCGCGATGCTTTCCACTGCTGCTTACCGGGACTGGGACCGAGAGCTTGGAATGGGACCTCAGGGCTC  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  TGTCGGCCCTGTGTAGCTGCGTTTTTCACCTTATGCCTTCAACGGAGGTCCTGTATTGGCAATTGCTGGAGAAG  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  ATTTTTCCATCGTTGCTTCAGACACTCGGTTGAGTGAAGAATTTTCAATTCATACCCGAGATAGCCCCAAATGT  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  TATAAACTAACAGACAAAACAGTAATTGGCTGCAGTGGTTTTCATGGAGATTGTCTCACTTTGACAAAGATTAT  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  TGAAACAAGATTAAAGATGAACAAGGCCATGAGAACGGGGGCAGTTGCCGCAATGCTGTCTACCATCCCGTGCT  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  CACGGCGCTTCTTCCCTTACTATGTTTACAACATCATTGGAGGACTTGATGAAGAAGGAAAGGGAGCTGTATAC  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  AGCTTTGACCCAGTGGGCTCTTACCAGAGAGACTCTGTCAAGGCAGGAGCTTCAGCAAGTGCCACGCTACAGCC  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  TCTGCTGCACAACCAGACTGGTTTCAGACGTATGCAAAGTGTGGAGCATGTCCCCCAGGATCCTGGACAGAGCT  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  ATGAGGCTGGTGAAAGATGTCTTCATTTCTGCAGCCGAGAGGGATGTGTATACTGGAGATGCCCTCAGGATCTG  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  CATCGTGACCAAAGAGGGCATCAGGGAGGAAACTGTTCCCCTGCGGAAAGACTCATGTGTGGGTCATATATTGG  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  AGCTGTGGCACAAGTTTGTTTTATTAAAAAGAAATGTAAAGCACTCATTTTCTTACACTGTGTCTTCTCTAAGC  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  GTGACAAATTGGGAAGAATTTCGTCCTTAGGGGTTGGAGAGAGAACTCTTCAGTTTAAAAAGTATGGCTCTTGT  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  GAGAACCTCCGTTTGATTCCTAACACCCACCTGTAACTCCAGTTCCAGGGGCTACAGTGTCCTCTTCTGGCCTC  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  AACAGGTACATGCAAATGTCCACATACAAATGTATGAAATGAAAAATAAAACCACTAATAAAATTTCTTTTTCT  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  TTAAAATTTTTTTTAAAAAGTTGATACCAAGCCCAGAATTTCTTTCTGCCAACAAATTAGGATCTAGTTCTCAG  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  CTACTACTCCAGCATCTGCCTATATGCTGCTATGCTTCCTGTCATGATAATGGATTAAACCTCTGAAACTGTAA  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  GAAAGCCCATTTAGTTTTCTCCTGTAACAGTTACCTTAGTCATGGTGTCTCTTACACTGCAATAGAGCTGTGAC  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  TAAGGTAGGTGAGTAGAGAGCGTGAGGATCTTGGAGGAGTTAGGGGAGGGGAAAGATTATGATCAAATTATAAT  1554

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1555  GTATTGAAAAGTTTAATAAAAAATTAAAGTACTAAATACTATTTGAAACAATGAATCTTACATATTTAAAGACT  1628

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1629  CATTATTTCCCTACTTTTATTTCCTTTAAAAATAAATTAACGGGGAGGCCGGAAGTAGTCGAAGCCAGCGGCTG  1702

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1703  AAGTAGCCGAAGCCAGAGGCGAAAGTAGCCGAAGCCAGAGGCGAAAGTAGCCGAAGCCATTGGCGGAAGCAGCC  1776

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1777  GAAGCCAGCGGCGGAAGTAGTTGAAGCCAGCGGCGGAAGTAGCCAGAGCGGGCAGGCGGCGAGGCGAGGCAAGA  1850

Query    1  -------------------------------ATGTCGGACTTCGACGAGTTCGAGCGGCAGCTCAACGAGAATA  43
                                           ||||||||||||.||.||||.||||.|||||||||.|.|||.|
Sbjct 1851  GCTACACAGGGCCCTACGCAGTCGCGTAAGCATGTCGGACTTCTACAAGTTTGAGCAGCAGCTCAAGGGGAACA  1924

Query   44  AACAAGAGCGGGACAAGGAGAACCGGCATCGGAAGCGCAGCCACAGCCGCTCTCGGAGCCGGGACCGCAAACGC  117
            ||.||||.||||||||||||||||||||.|..|||||.||.|||||.||||||||.|||||.||..|.||.|||
Sbjct 1925  AAGAAGAACGGGACAAGGAGAACCGGCACCATAAGCGTAGTCACAGTCGCTCTCGAAGCCGAGATAGAAAGCGC  1998

Query  118  CGGAGCCGGAGCCGCGACCGGCGCAACCGGGACCAGCGGAGCGCCTCCCGGGACA------GGCGACGACGCAG  185
            .|||||.|||||||.||.||||||||.|..||||||||.||.|.|||.|.|||.|      ||||||||||.||
Sbjct 1999  AGGAGCTGGAGCCGAGAGCGGCGCAATCCAGACCAGCGCAGTGACTCTCAGGATAGGAGGCGGCGACGACGAAG  2072

Query  186  CAAACCTTTGACCAGAGGCGCTAAAGAGGAGCACGGTGGACTGATTCGTTCCCCCCGCCACGAGAAGAAGAAGA  259
            |.|||.|||||||||||||||||||||||||||.||||||..||||||||||||..||||.|   |||||||||
Sbjct 2073  CCAACATTTGACCAGAGGCGCTAAAGAGGAGCAGGGTGGATGGATTCGTTCCCCGTGCCATG---AGAAGAAGA  2143

Query  260  AGGTCCGTAAATACTGGGACGTGCCACCCCCAGGCTTTGAGCACATCACCCCAATGCAGTACAAGGCCATGCAA  333
            ||||.||||||||||||||||||||.||.||.||||||||||||.|||||||||||||||||||||||||||||
Sbjct 2144  AGGTGCGTAAATACTGGGACGTGCCGCCACCTGGCTTTGAGCACGTCACCCCAATGCAGTACAAGGCCATGCAA  2217

Query  334  GCTGCGGGTCAGATTCCAGCCACTGCTCTTCTCCCCACCATGACCCCTGACGGTCTGGCTGTGACCCCAACGCC  407
            |||||.||||||||||.||||||.||.||||||||.||||||||.||||..|||||||||||||||||.|.|||
Sbjct 2218  GCTGCTGGTCAGATTCTAGCCACCGCCCTTCTCCCGACCATGACTCCTGGTGGTCTGGCTGTGACCCCGATGCC  2291

Query  408  GGTGCCCGTGGTCGGGAGCCAGATGACCAGACAAGCCCGGCGCCTCTACGTGGGCAACATCCCCTTTGGCATCA  481
            .|||||.|||||.||||||||||||||||||||.|||.|.||.|||||||||||||.||||||.||||||||||
Sbjct 2292  AGTGCCTGTGGTTGGGAGCCAGATGACCAGACAGGCCAGACGTCTCTACGTGGGCACCATCCCTTTTGGCATCA  2365

Query  482  CTGAGGAGGCCATGATGGATTTCTTCAACGCCCAGATGCGCCTGGGGGGGCTGACCCAGGCCCCTGGCAACCCA  555
            |.||||||.|.|||.||||.|||||.|||.|||||||||..|||.||||..||||.|||||||||||||||||.
Sbjct 2366  CCGAGGAGTCTATGCTGGACTTCTTAAACACCCAGATGCATCTGAGGGGCTTGACTCAGGCCCCTGGCAACCCG  2439

Query  556  GTGTTGGCTGTGCAGATTAACCAGGACAAGAATTTTGCCTTTTTGGAGTTCCGCTCAGTGGACGAGACTACCCA  629
            .|.||||||||||||||.||.|..|||||.||||||||.||||||||||||||.||||||||.|||||.|||||
Sbjct 2440  ATCTTGGCTGTGCAGATAAATCTAGACAAAAATTTTGCTTTTTTGGAGTTCCGGTCAGTGGATGAGACGACCCA  2513

Query  630  GGCTATGGCCTTTGATGGCATCATCTTCCAGGGCCAGTCACTAAAGATCCGCAGGCCTCACGACTACCAGCCGC  703
            |||..|||||||||||||||||||||||||||||||||||.|.|||||.||.||||||||.||||||||.||.|
Sbjct 2514  GGCCTTGGCCTTTGATGGCATCATCTTCCAGGGCCAGTCATTGAAGATTCGAAGGCCTCATGACTACCAACCAC  2587

Query  704  TTCCTGGCATGTCAGAGAACCCCTCCGTCTATGTGCCTGGGGTTGTGTCCACTGTGGTCCCCGACTCTGCCCAC  777
            |.|||||||||||||.||.||||||.||.|||||||||||.|||||.|||||..|.|||||.||||||||||||
Sbjct 2588  TGCCTGGCATGTCAGGGAGCCCCTCTGTTTATGTGCCTGGAGTTGTATCCACCATAGTCCCAGACTCTGCCCAC  2661

Query  778  AAGCTGTTCATCGGGGGCTTACCCAACTACCTGAACGATGACCAGGTCAAAGAGCTGCTGACATCCTTTGGGCC  851
            |||||||||||||||||.||.|||||||||||.||.|||||||||||.||||||||||||||||||.|||||..
Sbjct 2662  AAGCTGTTCATCGGGGGTTTGCCCAACTACCTAAATGATGACCAGGTAAAAGAGCTGCTGACATCCGTTGGGAT  2735

Query  852  CCTCAAGGCCTTCAACCTGGTCAAGGACAGTGCCACGGGGCTCTCCAAGGGCTACGCCTTCTGTGAGTACGTGG  925
            .||||.||||||||||.||||||||||.|||..|||.|||||||||||||||||.|||||||||||||||.|||
Sbjct 2736  TCTCAGGGCCTTCAACTTGGTCAAGGATAGTATCACAGGGCTCTCCAAGGGCTATGCCTTCTGTGAGTACATGG  2809

Query  926  ACATCAACGTCACGGATCAGGCCATTGCGGGGCTGAACGGCATGCAGCTGGGGGATAAGAAGCTGCTGGTCCAG  999
            |||||||||||||.|||||||||||||||.|||||||.||.|||||.||.|||||.|||||||||||.||||||
Sbjct 2810  ACATCAACGTCACCGATCAGGCCATTGCGTGGCTGAATGGGATGCATCTAGGGGACAAGAAGCTGCTTGTCCAG  2883

Query 1000  AGGGCGAGTGTGGGAGCCAAGAATGCCACGCTGAGCACCATCAATCAGACGCCTGTGACCCTGCAAGTGCCGGG  1073
            |||||.|||||||||||||||||||.|.|.|||||||.||||||||||||.|||||||||||.||||||||.||
Sbjct 2884  AGGGCAAGTGTGGGAGCCAAGAATGTCGCTCTGAGCATCATCAATCAGACACCTGTGACCCTTCAAGTGCCCGG  2957

Query 1074  CTTGATGAGCTCCCAGGTGCAGATGGGCGGCCACCCGACTGAGGTCCTGTGCCTCATGAACATGGTGCTGCCTG  1147
            |.|||.||||||.|||||||||||||||||.|||||.|||..|||||||||||||||||||||||||||.||..
Sbjct 2958  CCTGACGAGCTCTCAGGTGCAGATGGGCGGTCACCCAACTACGGTCCTGTGCCTCATGAACATGGTGCTCCCCA  3031

Query 1148  AGGAGCTGCTGGACGACGAGGAGTATGAGGAGATCGTGGAGGATGTGCGGGACGAGTGCAGCAAGTACGGGCTT  1221
            ||||||||||||||||||||||.|||||.|||||.||.||.||.||.||.||||||||||.||||||.||.||.
Sbjct 3032  AGGAGCTGCTGGACGACGAGGAATATGAAGAGATTGTAGACGACGTACGAGACGAGTGCAACAAGTATGGACTG  3105

Query 1222  GTCAAGTCCATCGAGATCCCCCGGCCTGTGGACGGCGTCGAGGTGCCCGGCTGCGGAAAGATCTTTGTGGAGTT  1295
            |||||.||.||.||.||.|||||.||..||||.||.||.||||||||.|||||.||||||||||||||||||||
Sbjct 3106  GTCAAATCGATTGAAATTCCCCGCCCCATGGATGGTGTTGAGGTGCCTGGCTGTGGAAAGATCTTTGTGGAGTT  3179

Query 1296  CACCTCTGTGTTTGACTGCCAGAAAGCCATGCAGGGCCTGACGGGCCGCAAGTTCGCCAACAGAGTGGTTGTCA  1369
            |||.||||||.||||||||||||||||.||||||||.||.||.||||||||||||||||||||||||||.||||
Sbjct 3180  CACTTCTGTGATTGACTGCCAGAAAGCTATGCAGGGTCTAACTGGCCGCAAGTTCGCCAACAGAGTGGTGGTCA  3253

Query 1370  CAAAATACTGTGACCCCGACTCTTATCACCGCCGGGACTTCTGG------------------------------  1413
            |.||||||||||||||.||||||||.|||.|.|||.||||||||                              
Sbjct 3254  CCAAATACTGTGACCCTGACTCTTACCACGGTCGGAACTTCTGGTAGAGGTGGCTGGGGGATGATGGGGACAGA  3327

Query 1414  --------------------------------------------------------------------------  1413
                                                                                      
Sbjct 3328  GCTGGCTGGGAACTTTTCCCCAACCTGCCCCCTCCTCCTTTCCCCCTTGTGAAGAAAATGGGCAGAGGAGTGAC  3401

Query 1414  --------------------------------------------------------------------------  1413
                                                                                      
Sbjct 3402  AGCCGGATGACAGCCGACAGCAACTGGATTGGCAGCAATTAAGGGGAACGGGGGTGAGGGGCTAAGGCAGGAAG  3475

Query 1414  --------------------------------------------------------------------------  1413
                                                                                      
Sbjct 3476  GGGACTGGGTAAGTGCACACAGGCCCACACAGACACATGCACCCACACAGACACAGAGGGAACAGGCTGGGATG  3549

Query 1414  --------------------------------------------------------------------------  1413
                                                                                      
Sbjct 3550  GGGACTGTGTGTACAGCAGGGCAGGTAGGACCTCCACAGCCCCTTCCCAAACAGCTTCTTCATATCCCTTACAC  3623

Query 1414  --------------------------------------------------------------------------  1413
                                                                                      
Sbjct 3624  CCCTTTCTTCTTCTCTTCCCCTATGGTAGGAACATAGGATGTTTATATTTTATGGCCAAACGAATTTGAATTTT  3697

Query 1414  --------------------------------------------------------------------------  1413
                                                                                      
Sbjct 3698  GTTGCCTAGCCTTCAGGGCCCTGCCCTCTCCCTTTGCAGGACCACAGCTCCTATCCTCTGGCTTCTGGTCCTCC  3771

Query 1414  --------------------------------------------------------------------------  1413
                                                                                      
Sbjct 3772  CTGTTCTCCACCCTGGTTTCTTAAGTAGTTGGTTCTTCTCCTTAGTCTTCCTGACTCTCAACCCATGATCTCTG  3845

Query 1414  --------------------------------------------------------------------------  1413
                                                                                      
Sbjct 3846  TCCCGCTCCCCCTCTCAGTGGCAGTTCCATATTTGTTATTACAAATTTGTTCATTAAATATTTTGTTGTATTTT  3919

Query 1414  -------------------------------------  1413
                                                 
Sbjct 3920  ACATTTAGAAAATAAATTCATTTTATTGTTTCTCAGA  3956

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