Nucleotide Global Alignment
Description
- Query:
- TRCN0000479746
- Subject:
- XR_377290.3
- Aligned Length:
- 2749
- Identities:
- 1362
- Gaps:
- 1259
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 AAAATGTTCATAATGTGGTTTTATTTTTATTCATTTTTCATTAGGTTCTGATGAAGTACGCCAAAGTTAAACTA 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GGGAATTGCTTATATGTTAAAAACAAAAACAAAACGAGTAAAGACTTGTTTGAATGGCGATCACTTGGAAAATA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GGAAGAAAAAGAAATACGTATGTTGTCAGTTTCTCTGGAAAACCCTTCACCGTGCTGTTTGGGAAAAACAAAAC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 AAATAGCAGAAGCTAGTACAAAGGGAACCAAAATTTCTCTTCAGGCCTAATGAGCAGGAGTGCATCTCTTCTAG 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 CTCGTCTGGATTTCATTGATACCTTTAAGCCCCAGTCCTGGGAGACACAGCTTTAAGACTCCTGGAAACCTTGT 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 TTACGTCCTGGAAATCTTGATTGCAACCGAATTCTGACTCCACTTTAAGGTAGACCTAGGAACGCTTTGGGCCT 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 CAGTTTCCCTCCGTCTATCACCCCAGGACCTGGCAACTGTTGCAGGCTCCCCCCCCAGACATTACAAAGTGTGT 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 GGAGCACGCCCGGCTCTCGGAAGCGCTCTACACCCGCGAGCTGTTACGTCAGTGGGTCCCTCGGCGGCGCCCGG 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 GCTGTCCTCCTAAAATACTAGTACAAGAAGTATAAATGGCCCGGGAGAGTGCAGGGACCGGGCCCACGTGACCG 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 CTCCACGAAGGCCACCGGCGGGGGCTCGGAGCGCAGGCCGCGCGCTTTCCCGCCGCATCCGGGCGCCGGGCGAG 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 CTCCGGGGACGCCGGGCCCTGGCGGCGGCGGCGGCTCGAGCCGTGCCTCGGGCGGGTGAATCATCCCGGCCGAC 814
Query 1 ------------------------------------ATGGCTGAAGCGGCCACGGGCTTTCTGGAGCAGCTCAA 38
|||||.||.||||.|.|||||||.||||||||||||||
Sbjct 815 AGCGAGCGCCGCGGCGGCCCGTAGCAGCGCCGGAAGATGGCCGAGGCGGGCGCGGGCTTCCTGGAGCAGCTCAA 888
Query 39 GTCCTGCATAGTTTGGTCTTGGACGTATCTGTGGACCGTGTGGTTCTTCATCGTGCTATTCCTGGTCTACATCC 112
|||||||||.||.|||||.|||||.||||||||||||||||||||||||.|||||||.||||||||||||||||
Sbjct 889 GTCCTGCATCGTGTGGTCGTGGACCTATCTGTGGACCGTGTGGTTCTTCCTCGTGCTCTTCCTGGTCTACATCC 962
Query 113 TGCGGGTGCCTTTGAAAATCAACGACAACTTGAGCACAGTGAGCATGTTTTTGAACACATTAACACCGAAGTTC 186
||.|||||||..|||..||||||||||||.||||||||||||||||||||||||||||.|||||.||.||||||
Sbjct 963 TGAGGGTGCCCCTGAGGATCAACGACAACCTGAGCACAGTGAGCATGTTTTTGAACACGTTAACCCCAAAGTTC 1036
Query 187 TACGTGGCCCTAACAGGCACTTCCTCACTAATATCAGGGCTTATTTTGATATTTGAATGGTGGTATTTTCGCAA 260
|||||||||||.||||||||||||||.||||||||.||.|||||||||||||||||||||||||||||||||||
Sbjct 1037 TACGTGGCCCTGACAGGCACTTCCTCGCTAATATCGGGACTTATTTTGATATTTGAATGGTGGTATTTTCGCAA 1110
Query 261 ATACGGAACTTCATTCATTGAACAAGTCTCAGTAAGCCACTTGCGCCCCCTTCTGGGAGGGGTTGACAACAACT 334
.||.|||||.||.|||||||||||||||||.|||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 GTATGGAACATCTTTCATTGAACAAGTCTCCGTAAGCCACTTGCGCCCCCTTCTGGGAGGGGTTGACAACAACT 1184
Query 335 CTTCCAACA---------------------ACTCAGATTCCAATAGGCAAAGTGTCTCAGAATGCAAAGTATGG 387
|||||||.| |||||||||||||.||.|||||||||||||||||||||||||||
Sbjct 1185 CTTCCAATAATTCTAATTCCAGTAATGGAGACTCAGATTCCAACAGACAAAGTGTCTCAGAATGCAAAGTATGG 1258
Query 388 CGAAATCCACTAAATTTATTTAGGGGTGCTGAATACAATCGGTATACTTGGGTGACAGGACGAGAGCCTCTTAC 461
|||||||||||.|||.|.|||||||||||.|||||.||||||||.||||||||.|||||||||||||||||.||
Sbjct 1259 CGAAATCCACTGAATCTGTTTAGGGGTGCGGAATATAATCGGTACACTTGGGTCACAGGACGAGAGCCTCTGAC 1332
Query 462 TTACTATGACATGAATCTCTCTGCCCAAGACCACCAGACATTCTTTACTTGTGACTCGGACCATCTGCGTCCCG 535
.||||||||||||||.|||||||||||.||||||||||||||||||||||||||.||.||.|||||.||.||.|
Sbjct 1333 CTACTATGACATGAACCTCTCTGCCCAGGACCACCAGACATTCTTTACTTGTGATTCAGATCATCTTCGCCCTG 1406
Query 536 CAGATGCAATAATGCAGAAAGCCTGGAGAGAGAGAAACCCCCAAGCTAGGATTTCTGCAGCTCATGAAGCCTTG 609
||||||||||||||||.|||||.||||||||.||.|||||.|||||.|||||||||||||||||||||||||||
Sbjct 1407 CAGATGCAATAATGCAAAAAGCTTGGAGAGAAAGGAACCCTCAAGCCAGGATTTCTGCAGCTCATGAAGCCTTG 1480
Query 610 GAGATAAATG---------------------------------------------------------------- 619
||||||||.|
Sbjct 1481 GAGATAAACGAAATTAGGTCCAGAGTTGAAGTTCCCCTAATTGCTTCCTCTACCATCTGGGAGATAAAATTGTT 1554
Query 620 -----AGTGTGCAACTGCTTATATTCTCTTGGCTGAAGAGGAAGCAACAACCATTGCTGAAGCAGAAAAATTAT 688
|||||||||||||.||.|||||||||||.|||||.|||||.|||||.||||||||||||||||||.|.|
Sbjct 1555 ACCAAAGTGTGCAACTGCGTACATTCTCTTGGCGGAAGAAGAAGCGACAACTATTGCTGAAGCAGAAAAACTCT 1628
Query 689 TTAAGCAGGCCCTGAAGGCTGGAGATGGCTGTTACCGACGCTCTCAGCAGCTACAACATCATGGATCCCAGTAT 762
||||||||||||||||||||||||||||.||||||||.||||||||||||||||||||||||||.|||||||||
Sbjct 1629 TTAAGCAGGCCCTGAAGGCTGGAGATGGTTGTTACCGGCGCTCTCAGCAGCTACAACATCATGGGTCCCAGTAT 1702
Query 763 GAAGCCCAACATAGACGAGACACCAATGTCTTGGTGTACATCAAAAGAAGGCTAGCAATGTGTGCCAGAAGACT 836
|||||.|||||.||||||||||||||||||||.||.||.||||||||||||||.||.|||||||||.|.|||||
Sbjct 1703 GAAGCTCAACACAGACGAGACACCAATGTCTTAGTCTATATCAAAAGAAGGCTGGCGATGTGTGCCCGGAGACT 1776
Query 837 CGGGAGGACCAGGGAAGCAGTGAAAATGATGAGAGATTTAATGAAGGAGTTCCCCCTTCTGAGTATGTTCAATA 910
.||.||||||||.|||||||||||.||||||||||||||||||||||||||.|||||.||.||.||||||||||
Sbjct 1777 TGGAAGGACCAGAGAAGCAGTGAAGATGATGAGAGATTTAATGAAGGAGTTTCCCCTCCTAAGCATGTTCAATA 1850
Query 911 TCCATGAAAACCTTTTAGAAGCCCTTCTGGAACTACAAGCATATGCTGATGTTCAGGCAGTCTTAGCAAAGTAT 984
|||||||.||||||.|||||||.|||||||||||.|||||.|||||||||||||||||||||||||||||||||
Sbjct 1851 TCCATGAGAACCTTCTAGAAGCTCTTCTGGAACTCCAAGCTTATGCTGATGTTCAGGCAGTCTTAGCAAAGTAT 1924
Query 985 GATGATATAAGCTTACCAAAGTCAGCAACAATATGCTACACAGCTGCTTTGCTCAAAGCAAGAGCTGTCTCTGA 1058
|||||||||||||||||||||||.||.|||||||||||||||||.||..|||||||||||||||||||||||||
Sbjct 1925 GATGATATAAGCTTACCAAAGTCGGCGACAATATGCTACACAGCCGCCCTGCTCAAAGCAAGAGCTGTCTCTGA 1998
Query 1059 CAAATTCTCTCCTGAGGCTGCATCTCGGCGGGGGCTGAGCACAGCAGAGATGAATGCAGTAGAGGCCATTCATA 1132
||||||||||||.||||||||.||||||.||||||||||||||||||||||||||||||||||.|||||.||.|
Sbjct 1999 CAAATTCTCTCCAGAGGCTGCGTCTCGGAGGGGGCTGAGCACAGCAGAGATGAATGCAGTAGAAGCCATCCACA 2072
Query 1133 GAGCTGTGGAATTCAATCCTCATGTGCCAAAATACCTACTAGAAATGAAAAGCTTAATCCTACCCCCAGAACAT 1206
|||||||||||||.|||||.||.||||||||
Sbjct 2073 GAGCTGTGGAATTTAATCCACACGTGCCAAA------------------------------------------- 2103
Query 1207 ATCCTGAAGAGAGGAGACAGTGAAGCAATAGCATATGCATTCTTTCATCTTGCACACTGGAAGAGAGTGGAAGG 1280
Sbjct 2104 -------------------------------------------------------------------------- 2103
Query 1281 GGCTTTGAATCTTTTGCATTGTACGTGGGAAGGCACTTTTCGGATGATCCCTTATCCCTTGGAAAAGGGGCACC 1354
|||||.|||||||||||.||||||.||||.|||||.||||
Sbjct 2104 ----------------------------------ACTTTCCGGATGATCCCGTATCCCCTGGAGAAGGGACACC 2143
Query 1355 TATTTTATCCTTACCCAATCTGTACAGAAACAGCAGACCGAGAGCTGCTTCCATCTTTCCATGAAGTCTCAGTT 1428
||||||||||.|||||||||||||||||||||||.|||||.|||||||||||.|||||||||||||||||||||
Sbjct 2144 TATTTTATCCATACCCAATCTGTACAGAAACAGCTGACCGGGAGCTGCTTCCCTCTTTCCATGAAGTCTCAGTT 2217
Query 1429 TACCCAAAGAAGGAGCTTCCCTTCTTTATTCTCTTTACTGCTGGATTATGTTCCTTCACAGCCATGCTGGCCCT 1502
||||||||||||||.|||||||||||.||.|||||.|||||||||.|.||.|||||||||||||||||||||||
Sbjct 2218 TACCCAAAGAAGGAACTTCCCTTCTTCATCCTCTTCACTGCTGGACTGTGCTCCTTCACAGCCATGCTGGCCCT 2291
Query 1503 CCTGACACATCAGTTCCCGGAACTTATGGGGGTCTTCGCAAAAGCTTTCCTCAGCACTTTGTTTGCCCCCTTAA 1576
|||||||||||||||.||||||||||||||.|||||||||||||||||||||||||||||||||||||||||.|
Sbjct 2292 CCTGACACATCAGTTTCCGGAACTTATGGGAGTCTTCGCAAAAGCTTTCCTCAGCACTTTGTTTGCCCCCTTGA 2365
Query 1577 ACTTTGTCATGGAGAAAGTGGAGAGCATCCTCCCATCCAGTCTGTGGCACCAGCTAACACGGATC--------- 1641
|||||||.||||||||||||||.|||||||||||.||||||.|||||||.|||||.|||||||||
Sbjct 2366 ACTTTGTTATGGAGAAAGTGGAAAGCATCCTCCCCTCCAGTTTGTGGCATCAGCTGACACGGATCTGAGGGAGC 2439
Query 1642 -------------------------------------------------------------------------- 1641
Sbjct 2440 CTCCCATCCTTCACTTTCCACACCATCCACCATCTCTTCTGTGCCAACCTCTCATGGACCGCAAGAAAGCATGA 2513
Query 1642 -------------------------------------------------------------------------- 1641
Sbjct 2514 CTTTGAAAAAGGGAAACCATTCTGAGATTTTAAACTGCTCATGGACTATCAGTTCCTTATTAAAGGCTGGTTTT 2587
Query 1642 ----------- 1641
Sbjct 2588 GTTGTACAAAA 2598
