Construct: ORF TRCN0000479746

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF004511.1_s317c1
Derived from:
ccsbBroadEn_11249
DNA Barcode:
TGGCTCGCTACCTCCTCGCAGCAC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ST7 (7982)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000479746
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 7982 ST7 suppression of tumorigenici... NM_018412.4 98.7% 98.7% 344_364del
2 human 7982 ST7 suppression of tumorigenici... NM_001369598.1 94.8% 94.8% 344_364del;641_709del
3 human 7982 ST7 suppression of tumorigenici... NM_001369604.1 94.3% 92.5% (many diffs)
4 human 7982 ST7 suppression of tumorigenici... NM_001369601.1 93.9% 93.7% 344_364del;641_709del;1390_1391insGTACGTGGGAAGGCA
5 human 7982 ST7 suppression of tumorigenici... NM_021908.3 90.6% 88.9% (many diffs)
6 human 7982 ST7 suppression of tumorigenici... NM_001369600.1 90.5% 89.7% (many diffs)
7 human 7982 ST7 suppression of tumorigenici... NM_001369603.1 90.1% 89.8% (many diffs)
8 human 7982 ST7 suppression of tumorigenici... NM_001369607.1 89.6% 89.5% 1_1delAins151;194_214del
9 human 7982 ST7 suppression of tumorigenici... NM_001369599.1 86.9% 86.1% (many diffs)
10 human 7982 ST7 suppression of tumorigenici... NM_001369602.1 86.5% 86.3% (many diffs)
11 human 7982 ST7 suppression of tumorigenici... NM_001369606.1 86% 85.9% 1_1delAins151;194_214del;491_559del
12 human 7982 ST7 suppression of tumorigenici... NR_161423.1 76.9% (many diffs)
13 human 7982 ST7 suppression of tumorigenici... NR_161421.1 75.9% (many diffs)
14 human 7982 ST7 suppression of tumorigenici... NR_161422.1 74.4% (many diffs)
15 human 7982 ST7 suppression of tumorigenici... NR_161420.1 73.6% (many diffs)
16 human 7982 ST7 suppression of tumorigenici... NR_161419.1 67.2% (many diffs)
17 human 7982 ST7 suppression of tumorigenici... NR_161418.1 65.3% (many diffs)
18 mouse 64213 St7 suppression of tumorigenici... NM_001289626.1 90.6% 98% (many diffs)
19 mouse 64213 St7 suppression of tumorigenici... NM_001289624.1 87% 94.1% (many diffs)
20 mouse 64213 St7 suppression of tumorigenici... XM_011241074.1 87% 94.1% (many diffs)
21 mouse 64213 St7 suppression of tumorigenici... NM_001289625.1 86.1% 93% (many diffs)
22 mouse 64213 St7 suppression of tumorigenici... NM_001083315.2 83.4% 89.7% (many diffs)
23 mouse 64213 St7 suppression of tumorigenici... NM_001289629.1 83.1% 89.7% (many diffs)
24 mouse 64213 St7 suppression of tumorigenici... NM_022332.3 80.1% 86.1% (many diffs)
25 mouse 64213 St7 suppression of tumorigenici... NM_001289627.1 79.8% 86.1% (many diffs)
26 mouse 64213 St7 suppression of tumorigenici... XM_011241076.2 62.9% 68.4% (many diffs)
27 mouse 64213 St7 suppression of tumorigenici... XM_011241075.2 55.9% 61.6% (many diffs)
28 mouse 64213 St7 suppression of tumorigenici... XR_377291.3 50.9% (many diffs)
29 mouse 64213 St7 suppression of tumorigenici... XR_868763.2 50.5% (many diffs)
30 mouse 64213 St7 suppression of tumorigenici... XR_377290.3 49.5% (many diffs)
31 mouse 64213 St7 suppression of tumorigenici... XR_868764.2 33.7% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1707
ORF length:
1641
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatggc tgaagcggcc acgggctttc tggagcagct caagtcctgc atagtttggt
121cttggacgta tctgtggacc gtgtggttct tcatcgtgct attcctggtc tacatcctgc
181gggtgccttt gaaaatcaac gacaacttga gcacagtgag catgtttttg aacacattaa
241caccgaagtt ctacgtggcc ctaacaggca cttcctcact aatatcaggg cttattttga
301tatttgaatg gtggtatttt cgcaaatacg gaacttcatt cattgaacaa gtctcagtaa
361gccacttgcg cccccttctg ggaggggttg acaacaactc ttccaacaac tcagattcca
421ataggcaaag tgtctcagaa tgcaaagtat ggcgaaatcc actaaattta tttaggggtg
481ctgaatacaa tcggtatact tgggtgacag gacgagagcc tcttacttac tatgacatga
541atctctctgc ccaagaccac cagacattct ttacttgtga ctcggaccat ctgcgtcccg
601cagatgcaat aatgcagaaa gcctggagag agagaaaccc ccaagctagg atttctgcag
661ctcatgaagc cttggagata aatgagtgtg caactgctta tattctcttg gctgaagagg
721aagcaacaac cattgctgaa gcagaaaaat tatttaagca ggccctgaag gctggagatg
781gctgttaccg acgctctcag cagctacaac atcatggatc ccagtatgaa gcccaacata
841gacgagacac caatgtcttg gtgtacatca aaagaaggct agcaatgtgt gccagaagac
901tcgggaggac cagggaagca gtgaaaatga tgagagattt aatgaaggag ttcccccttc
961tgagtatgtt caatatccat gaaaaccttt tagaagccct tctggaacta caagcatatg
1021ctgatgttca ggcagtctta gcaaagtatg atgatataag cttaccaaag tcagcaacaa
1081tatgctacac agctgctttg ctcaaagcaa gagctgtctc tgacaaattc tctcctgagg
1141ctgcatctcg gcgggggctg agcacagcag agatgaatgc agtagaggcc attcatagag
1201ctgtggaatt caatcctcat gtgccaaaat acctactaga aatgaaaagc ttaatcctac
1261ccccagaaca tatcctgaag agaggagaca gtgaagcaat agcatatgca ttctttcatc
1321ttgcacactg gaagagagtg gaaggggctt tgaaTCTTTT GCATTGTACG TGGGAAGGCA
1381CTTTTCGGAT GATCCCTTAT CCCTTGGAAA AGGGGCACCT ATTTTATCCT TACCCAATCT
1441GTACAGAAAC AGCAGACCGA GAGCTGCTTC CATCTTTCCA TGAAGTCTCA GTTTACCCAA
1501AGAAGGAGCT TCCCTTCTTT ATTCTCTTTA CTGCTGGATT ATGTTCCTTC ACAGCCATGC
1561TGGCCCTCCT GACACATCAG TTCCCGGAAC TTATGGGGGT CTTCGCAAAA GCTTTCCTCA
1621GCACTTTGTT TGCCCCCTTA AACTTTGTCA TGGAGAAAGT GGAGAGCATC CTCCCATCCA
1681GTCTGTGGCA CCAGCTAACA CGGATCTGCC CAACTTTCTT GTACAAAGTG GTTGATATCG
1741GTAAGCCTAT CCCTAACCCT CTCCTCGGTC TCGATTCTAC GTAGTAATGA ACTAGTCCGT
1801AACTTGAAAG TATTTCGATT TCTTGGCTTT ATATATCTTG TGGAAAGGAC GATGGCTCGC
1861TACCTCCTCG CAGCACACGC GTTAAGTCga caatcaacct ctggattaca aaatttgtga
1921aagatt

Download FASTA (ORF) (Full)

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