Nucleotide Global Alignment
Description
- Query:
- TRCN0000479746
- Subject:
- XR_868763.2
- Aligned Length:
- 2981
- Identities:
- 1506
- Gaps:
- 1340
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 TGGGAAAATGTTCATAATGTGGTTTTATTTTTATTCATTTTTCATTAGGTTCTGATGAAGTACGCCAAAGTTAA 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 ACTAGGGAATTGCTTATATGTTAAAAACAAAAACAAAACGAGTAAAGACTTGTTTGAATGGCGATCACTTGGAA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 AATAGGAAGAAAAAGAAATACGTATGTTGTCAGTTTCTCTGGAAAACCCTTCACCGTGCTGTTTGGGAAAAACA 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 AAACAAATAGCAGAAGCTAGTACAAAGGGAACCAAAATTTCTCTTCAGGCCTAATGAGCAGGAGTGCATCTCTT 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 CTAGCTCGTCTGGATTTCATTGATACCTTTAAGCCCCAGTCCTGGGAGACACAGCTTTAAGACTCCTGGAAACC 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 TTGTTTACGTCCTGGAAATCTTGATTGCAACCGAATTCTGACTCCACTTTAAGGTAGACCTAGGAACGCTTTGG 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 GCCTCAGTTTCCCTCCGTCTATCACCCCAGGACCTGGCAACTGTTGCAGGCTCCCCCCCCAGACATTACAAAGT 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 GTGTGGAGCACGCCCGGCTCTCGGAAGCGCTCTACACCCGCGAGCTGTTACGTCAGTGGGTCCCTCGGCGGCGC 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 CCGGGCTGTCCTCCTAAAATACTAGTACAAGAAGTATAAATGGCCCGGGAGAGTGCAGGGACCGGGCCCACGTG 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 ACCGCTCCACGAAGGCCACCGGCGGGGGCTCGGAGCGCAGGCCGCGCGCTTTCCCGCCGCATCCGGGCGCCGGG 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 CGAGCTCCGGGGACGCCGGGCCCTGGCGGCGGCGGCGGCTCGAGCCGTGCCTCGGGCGGGTGAATCATCCCGGC 814
Query 1 ----------------------------------------ATGGCTGAAGCGGCCACGGGCTTTCTGGAGCAGC 34
|||||.||.||||.|.|||||||.||||||||||
Sbjct 815 CGACAGCGAGCGCCGCGGCGGCCCGTAGCAGCGCCGGAAGATGGCCGAGGCGGGCGCGGGCTTCCTGGAGCAGC 888
Query 35 TCAAGTCCTGCATAGTTTGGTCTTGGACGTATCTGTGGACCGTGTGGTTCTTCATCGTGCTATTCCTGGTCTAC 108
|||||||||||||.||.|||||.|||||.||||||||||||||||||||||||.|||||||.||||||||||||
Sbjct 889 TCAAGTCCTGCATCGTGTGGTCGTGGACCTATCTGTGGACCGTGTGGTTCTTCCTCGTGCTCTTCCTGGTCTAC 962
Query 109 ATCCTGCGGGTGCCTTTGAAAATCAACGACAACTTGAGCACAGTGAGCATGTTTTTGAACACATTAACACCGAA 182
||||||.|||||||..|||..||||||||||||.||||||||||||||||||||||||||||.|||||.||.||
Sbjct 963 ATCCTGAGGGTGCCCCTGAGGATCAACGACAACCTGAGCACAGTGAGCATGTTTTTGAACACGTTAACCCCAAA 1036
Query 183 GTTCTACGTGGCCCTAACAGGCACTTCCTCACTAATATCAGGGCTTATTTTGATATTTGAATGGTGGTATTTTC 256
|||||||||||||||.||||||||||||||.||||||||.||.|||||||||||||||||||||||||||||||
Sbjct 1037 GTTCTACGTGGCCCTGACAGGCACTTCCTCGCTAATATCGGGACTTATTTTGATATTTGAATGGTGGTATTTTC 1110
Query 257 GCAAATACGGAACTTCATTCATTGAACAAGTCTCAGTAAGCCACTTGCGCCCCCTTCTGGGAGGGGTTGACAAC 330
||||.||.|||||.||.|||||||||||||||||.|||||||||||||||||||||||||||||||||||||||
Sbjct 1111 GCAAGTATGGAACATCTTTCATTGAACAAGTCTCCGTAAGCCACTTGCGCCCCCTTCTGGGAGGGGTTGACAAC 1184
Query 331 AACTCTTCCAACA---------------------ACTCAGATTCCAATAGGCAAAGTGTCTCAGAATGCAAAGT 383
|||||||||||.| |||||||||||||.||.|||||||||||||||||||||||
Sbjct 1185 AACTCTTCCAATAATTCTAATTCCAGTAATGGAGACTCAGATTCCAACAGACAAAGTGTCTCAGAATGCAAAGT 1258
Query 384 ATGGCGAAATCCACTAAATTTATTTAGGGGTGCTGAATACAATCGGTATACTTGGGTGACAGGACGAGAGCCTC 457
|||||||||||||||.|||.|.|||||||||||.|||||.||||||||.||||||||.||||||||||||||||
Sbjct 1259 ATGGCGAAATCCACTGAATCTGTTTAGGGGTGCGGAATATAATCGGTACACTTGGGTCACAGGACGAGAGCCTC 1332
Query 458 TTACTTACTATGACATGAATCTCTCTGCCCAAGACCACCAGACATTCTTTACTTGTGACTCGGACCATCTGCGT 531
|.||.||||||||||||||.|||||||||||.||||||||||||||||||||||||||.||.||.|||||.||.
Sbjct 1333 TGACCTACTATGACATGAACCTCTCTGCCCAGGACCACCAGACATTCTTTACTTGTGATTCAGATCATCTTCGC 1406
Query 532 CCCGCAGATGCAATAATGCAGAAAGCCTGGAGAGAGAGAAACCCCCAAGCTAGGATTTCTGCAGCTCATGAAGC 605
||.|||||||||||||||||.|||||.||||||||.||.|||||.|||||.|||||||||||||||||||||||
Sbjct 1407 CCTGCAGATGCAATAATGCAAAAAGCTTGGAGAGAAAGGAACCCTCAAGCCAGGATTTCTGCAGCTCATGAAGC 1480
Query 606 CTTGGAGATAAATG------------------------------------------------------------ 619
||||||||||||.|
Sbjct 1481 CTTGGAGATAAACGAAATTAGGTCCAGAGTTGAAGTTCCCCTAATTGCTTCCTCTACCATCTGGGAGATAAAAT 1554
Query 620 ---------AGTGTGCAACTGCTTATATTCTCTTGGCTGAAGAGGAAGCAACAACCATTGCTGAAGCAGAAAAA 684
|||||||||||||.||.|||||||||||.|||||.|||||.|||||.||||||||||||||||||
Sbjct 1555 TGTTACCAAAGTGTGCAACTGCGTACATTCTCTTGGCGGAAGAAGAAGCGACAACTATTGCTGAAGCAGAAAAA 1628
Query 685 TTATTTAAGCAGGCCCTGAAGGCTGGAGATGGCTGTTACCGACGCTCTCAGCAGCTACAACATCATGGATCCCA 758
.|.|||||||||||||||||||||||||||||.||||||||.||||||||||||||||||||||||||.|||||
Sbjct 1629 CTCTTTAAGCAGGCCCTGAAGGCTGGAGATGGTTGTTACCGGCGCTCTCAGCAGCTACAACATCATGGGTCCCA 1702
Query 759 GTATGAAGCCCAACATAGACGAGACACCAATGTCTTGGTGTACATCAAAAGAAGGCTAGCAATGTGTGCCAGAA 832
|||||||||.|||||.||||||||||||||||||||.||.||.||||||||||||||.||.|||||||||.|.|
Sbjct 1703 GTATGAAGCTCAACACAGACGAGACACCAATGTCTTAGTCTATATCAAAAGAAGGCTGGCGATGTGTGCCCGGA 1776
Query 833 GACTCGGGAGGACCAGGGAAGCAGTGAAAATGATGAGAGATTTAATGAAGGAGTTCCCCCTTCTGAGTATGTTC 906
||||.||.||||||||.|||||||||||.||||||||||||||||||||||||||.|||||.||.||.||||||
Sbjct 1777 GACTTGGAAGGACCAGAGAAGCAGTGAAGATGATGAGAGATTTAATGAAGGAGTTTCCCCTCCTAAGCATGTTC 1850
Query 907 AATATCCATGAAAACCTTTTAGAAGCCCTTCTGGAACTACAAGCATATGCTGATGTTCAGGCAGTCTTAGCAAA 980
|||||||||||.||||||.|||||||.|||||||||||.|||||.|||||||||||||||||||||||||||||
Sbjct 1851 AATATCCATGAGAACCTTCTAGAAGCTCTTCTGGAACTCCAAGCTTATGCTGATGTTCAGGCAGTCTTAGCAAA 1924
Query 981 GTATGATGATATAAGCTTACCAAAGTCAGCAACAATATGCTACACAGCTGCTTTGCTCAAAGCAAGAGCTGTCT 1054
|||||||||||||||||||||||||||.||.|||||||||||||||||.||..|||||||||||||||||||||
Sbjct 1925 GTATGATGATATAAGCTTACCAAAGTCGGCGACAATATGCTACACAGCCGCCCTGCTCAAAGCAAGAGCTGTCT 1998
Query 1055 CTGACAA------------------------------------------------------------------- 1061
|||||||
Sbjct 1999 CTGACAAATCGCCAGTACCTACTGCAACATCTTTTCTCCCTACACAGCGACTCCAGCTTGGGAGGGCAGGGCCA 2072
Query 1062 ---------------------------------------------------------------------ATTCT 1066
|||||
Sbjct 2073 GGGTTGCCACAGCTTCCCCTGTGGTGTCTGCCTGCCAAGCACAGCTCTGGAGTTAGCCCTGGGTGTGAGATTCT 2146
Query 1067 CTCCTGAGGCTGCATCTCGGCGGGGGCTGAGCACAGCAGAGATGAATGCAGTAGAGGCCATTCATAGAGCTGTG 1140
||||.||||||||.||||||.||||||||||||||||||||||||||||||||||.|||||.||.|||||||||
Sbjct 2147 CTCCAGAGGCTGCGTCTCGGAGGGGGCTGAGCACAGCAGAGATGAATGCAGTAGAAGCCATCCACAGAGCTGTG 2220
Query 1141 GAATTCAATCCTCATGTGCCAAAATACCTACTAGAAATGAAAAGCTTAATCCTACCCCCAGAACATATCCTGAA 1214
|||||.|||||.||.|||||||||||.||||||||||||||||||||||||||.||.||||||||.||||||||
Sbjct 2221 GAATTTAATCCACACGTGCCAAAATATCTACTAGAAATGAAAAGCTTAATCCTCCCACCAGAACACATCCTGAA 2294
Query 1215 GAGAGGAGACAGTGAAGCAATAGCATATGCATTCTTTCATCTTGCACACTGGAAGAGAGTGGAAGGGGCTTTGA 1288
||||||||||||||||||.||||||||||||||||||||||||||||||||||||||.||||||||||||||||
Sbjct 2295 GAGAGGAGACAGTGAAGCGATAGCATATGCATTCTTTCATCTTGCACACTGGAAGAGGGTGGAAGGGGCTTTGA 2368
Query 1289 ATCTTTTGCATTGTACGTGGGAAGGCACTTTTCGGATGATCCCTTATCCCTTGGAAAAGGGGCACCTATTTTAT 1362
||||.||||||||||||||||||||||||||.|||||||||||.||||||.||||.|||||.||||||||||||
Sbjct 2369 ATCTCTTGCATTGTACGTGGGAAGGCACTTTCCGGATGATCCCGTATCCCCTGGAGAAGGGACACCTATTTTAT 2442
Query 1363 CCTTACCCAATCTGTACAGAAACAGCAGACCGAGAGCTGCTTCCATCTTTCCATGAAGTCTCAGTTTACCCAAA 1436
||.|||||||||||||||||||||||.|||||.|||||||||||.|||||||||||||||||||||||||||||
Sbjct 2443 CCATACCCAATCTGTACAGAAACAGCTGACCGGGAGCTGCTTCCCTCTTTCCATGAAGTCTCAGTTTACCCAAA 2516
Query 1437 GAAGGAGCTTCCCTTCTTTATTCTCTTTACTGCTGGATTATGTTCCTTCACAGCCATGCTGGCCCTCCTGACAC 1510
||||||.|||||||||||.||.|||||.|||||||||.|.||.|||||||||||||||||||||||||||||||
Sbjct 2517 GAAGGAACTTCCCTTCTTCATCCTCTTCACTGCTGGACTGTGCTCCTTCACAGCCATGCTGGCCCTCCTGACAC 2590
Query 1511 ATCAGTTCCCGGAACTTATGGGGGTCTTCGCAAAAGCTTTCCTCAGCACTTTGTTTGCCCCCTTAAACTTTGTC 1584
|||||||.||||||||||||||.|||||||||||||||||||||||||||||||||||||||||.||||||||.
Sbjct 2591 ATCAGTTTCCGGAACTTATGGGAGTCTTCGCAAAAGCTTTCCTCAGCACTTTGTTTGCCCCCTTGAACTTTGTT 2664
Query 1585 ATGGAGAAAGTGGAGAGCATCCTCCCATCCAGTCTGTGGCACCAGCTAACACGGATC----------------- 1641
||||||||||||||.|||||||||||.||||||.|||||||.|||||.|||||||||
Sbjct 2665 ATGGAGAAAGTGGAAAGCATCCTCCCCTCCAGTTTGTGGCATCAGCTGACACGGATCTGAGGGAGCCTCCCATC 2738
Query 1642 -------------------------------------------------------------------------- 1641
Sbjct 2739 CTTCACTTTCCACACCATCCACCATCTCTTCTGTGCCAACCTCTCATGGACCGCAAGAAAGCATGACTTTGAAA 2812
Query 1642 -------------------------------------------------------------------------- 1641
Sbjct 2813 AAGGGAAACCATTCTGAGATTTTAAACTGCTCATGGACTATCAGTTCCTTATTAAAGGCTGGTTTTGTTGTACA 2886
Query 1642 -------------------------------------------------------------------------- 1641
Sbjct 2887 AAATTTATTGATGTTCAGTTCTATTTTATTTTGCCTTCAAAACTGACTGATCAAAAAGTAAAAAAAATAAATAA 2960
Query 1642 --------------------- 1641
Sbjct 2961 ATAAACTTTTGTGTATTGCAA 2981
