Nucleotide Global Alignment

Description

Query:
TRCN0000480524
Subject:
XM_006513881.2
Aligned Length:
1612
Identities:
1235
Gaps:
194

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ATGTCAGCGTCTGCTGTCTCGGGGCTGGCTGCCCTGTCTGGCCCCAGCTCTGGCCTCAGCTCTGATCCGTGTTC  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  TCCGATTCCCCCTGGACCAGTAACTGGCCTGAGGAGATGGTTGGATCATTCCAAACATTGTCTCAGTGTGGAAA  148

Query    1  ----------------------------ATGT-------------TGGAGCCAGCTCTAGCCACAGGAGAGGAG  33
                                        ||||             ||||||||.||.||.||||||||.|.|||
Sbjct  149  CTGAGGCAGAGAGTGGTCAGACCGGACAATGTGAGAACTGGACGCTGGAGCCAACTTTAACCACAGGACAAGAG  222

Query   34  CTGCCGGAACTGACCTTGCTGACCACACTGTTGGAGGGCCCTGGAGATAAGACGCAGCCACCTGAAGAGGAGAC  107
            |||||.|||||||||||.|||||.|||.||.|||||||.||||||||.|||.|.||||||.||||||||||.||
Sbjct  223  CTGCCCGAACTGACCTTACTGACTACATTGCTGGAGGGTCCTGGAGACAAGGCACAGCCAGCTGAAGAGGAAAC  296

Query  108  TTTGTCCCAAGCCCCTGAGAGTGAGGAGGAACAGAAGAAGAAGGCTCTGGAAAGGAGTATGTATGTCCTGAGTG  181
            ||||||||||||.||..|||.||||||.||.||||||||||.||||||||||||||||||||.|||||||.|||
Sbjct  297  TTTGTCCCAAGCTCCCAAGAATGAGGAAGAGCAGAAGAAGATGGCTCTGGAAAGGAGTATGTTTGTCCTGGGTG  370

Query  182  AACTGGTAGAAACAGAGAAAATGTACGTGGACGACTTGGGGCAGATTGTGGAGGGTTATATGGCCACCATGGCT  255
            |.|||||.||||||||.|.||..||.||||||||||||||.|||||.||.||||||||.|||||.|||||||||
Sbjct  371  AGCTGGTGGAAACAGAAAGAACATATGTGGACGACTTGGGACAGATCGTAGAGGGTTACATGGCTACCATGGCT  444

Query  256  GCTCAGGGGGTCCCCGAGAGTCTTCGAGGCCGTGACAGGATTGTGTTTGGGAATATCCAGCAAATCTATGAGTG  329
            .||||||||||.||.||||||||.|||||.|||||||||||||||||||||||.||.|||||.|||||||||||
Sbjct  445  ACTCAGGGGGTACCTGAGAGTCTCCGAGGTCGTGACAGGATTGTGTTTGGGAACATTCAGCAGATCTATGAGTG  518

Query  330  GCACCGAGACTATTTCTTGCAAGAGCTACAACGGTGTCTGAAAGATCCTGATTGGCTGGCTCAGCTATTCATCA  403
            ||||||||||||.|||.||||.|||||.||.|.||||.||||||||||.||||||.||||||||||.|||||||
Sbjct  519  GCACCGAGACTACTTCCTGCAGGAGCTGCAGCAGTGTTTGAAAGATCCCGATTGGTTGGCTCAGCTGTTCATCA  592

Query  404  AACACGAGCGCCGGCTGCATATGTATGTGGTGTACTGTCAGAATAAGCCCAAGTCAGAGCATGTGGTGTCAGAG  477
            ||||.||||||||.|||||||||||||||||||||||.||||||||.||||||||||||||||||.||||||||
Sbjct  593  AACATGAGCGCCGACTGCATATGTATGTGGTGTACTGCCAGAATAAACCCAAGTCAGAGCATGTGCTGTCAGAG  666

Query  478  TTTGGGGACAGCTACTTTGAGGAGCTCCGGCAGCAGCTGGGGCACCGCCTGCAGCTGAACGACCTCCTCATCAA  551
            ||||||||||||||||||||||||||..|||||||||||||.|||||.||||||||.||.|||||||||||.||
Sbjct  667  TTTGGGGACAGCTACTTTGAGGAGCTGAGGCAGCAGCTGGGACACCGACTGCAGCTCAATGACCTCCTCATTAA  740

Query  552  ACCTGTGCAGCGGATCATGAAATACCAGCTGCTGCTCAAGGATTTTCTCAAGTATTACAATAGAGCTGGGATGG  625
            |||.||||||||.|||||||||||||||.|||||||.|||||||||||.||||||||||..||||||||||.||
Sbjct  741  ACCAGTGCAGCGAATCATGAAATACCAGTTGCTGCTGAAGGATTTTCTAAAGTATTACAGAAGAGCTGGGAAGG  814

Query  626  ATACTGCAGACCTAGAGCAAGCTGTGGAGGTCATGTGCTTTGTGCCCAAGCGCTGCAACGATATGATGACGCTG  699
            ||||||.|||.||.|||||||||||||||||||||||.||.||.||.|||||.|||||.|||||||||.|.|||
Sbjct  815  ATACTGAAGAGCTGGAGCAAGCTGTGGAGGTCATGTGTTTCGTACCTAAGCGATGCAATGATATGATGTCCCTG  888

Query  700  GGGAGATTGCGGGGATTTGAGGGCAAACTGACTGCTCAGGGGAAGCTCTTGGGCCAGGACACTTTCTGGGTCAC  773
            ||||||.|.||||||||||||||.||||||||||||||||||||||||||||||||||||||.||||.|||.||
Sbjct  889  GGGAGACTTCGGGGATTTGAGGGAAAACTGACTGCTCAGGGGAAGCTCTTGGGCCAGGACACATTCTTGGTTAC  962

Query  774  CGAGCCTGAGGCTGGAGGGCTGCTATCTTCCCGAGGTCGAGAGAGGCGCGTCTTCCTCTTTGAGCAAATCATCA  847
            .||||||||.|||||.||.|||||.||||||||.|||||.||||||||.||||||||.||.|||||||||||||
Sbjct  963  AGAGCCTGAAGCTGGGGGTCTGCTTTCTTCCCGGGGTCGGGAGAGGCGTGTCTTCCTGTTCGAGCAAATCATCA  1036

Query  848  TCTTCAGTGAAGCCCTGGGAGGAGGAGTGAGAGGTGGAACACAGCCTGGATATGTATACAAGAACAGCATTAAG  921
            ||||||||||.||||||||||||||||...|||||||..|.||||||||.||.||.||||||||||||||.|||
Sbjct 1037  TCTTCAGTGAGGCCCTGGGAGGAGGAGGCCGAGGTGGCGCGCAGCCTGGCTACGTGTACAAGAACAGCATCAAG  1110

Query  922  GTGAGCTGCCTGGGACTGGAGGGGAACCTCCAAGGTGACCCTTGCCGCTTTGCACTGACCTCCAGAGGGCCAGA  995
            |||||||||||.||.|||||||||||.||||||||..||||||||||.|||||.||||||||.|||||||||||
Sbjct 1111  GTGAGCTGCCTAGGGCTGGAGGGGAATCTCCAAGGCAACCCTTGCCGGTTTGCGCTGACCTCTAGAGGGCCAGA  1184

Query  996  GGGTGGGATCCAGCGCTATGTCCTGCAGGCTGCAGACCCTGCTATCAGTCAGGCCTGGATCAAGCATGTGGCTC  1069
            .|||||||||||||||||.||.|||||||||.|||||||||||.|||||||.||||||||.|||||.|||||.|
Sbjct 1185  AGGTGGGATCCAGCGCTACGTTCTGCAGGCTTCAGACCCTGCTGTCAGTCAAGCCTGGATAAAGCAAGTGGCCC  1258

Query 1070  AGATCTTGGAGAGCCAACGGGACTTCCTCAACGCATTGCAGTCACCCATTGAGTACCAGAGACGGGAGAGCCAG  1143
            |||||.||||.|||||.||.|||||.|||||||||||.||||||||||||||.|||||||||||.|||||||||
Sbjct 1259  AGATCCTGGAAAGCCAGCGTGACTTTCTCAACGCATTACAGTCACCCATTGAATACCAGAGACGTGAGAGCCAG  1332

Query 1144  ACCAACAGCCTGGGGCGGCCAAGAGGGCCTGGAGTGGGGAGCCCTGGAAGAATTCGGCTTGGAGATCAGGCCCA  1217
            |||||.|||||||||||.|||.||||||||.|.||.|||||||||||.|||||.||||.||||||.|.||||||
Sbjct 1333  ACCAATAGCCTGGGGCGACCAGGAGGGCCTTGGGTAGGGAGCCCTGGGAGAATGCGGCCTGGAGACCTGGCCCA  1406

Query 1218  GGGCAGCACACACACACCCATCAATGGCTCTCTCCCCTCTCTGCTGCTGTC-ACCCAAAGGGGAGGTGGCCAGA  1290
            ||.|||||..||||||||||||||||||||||||||.||.|||||.|| || .||||.||||||||||.|||||
Sbjct 1407  GGCCAGCATGCACACACCCATCAATGGCTCTCTCCCTTCCCTGCTACT-TCTGCCCAGAGGGGAGGTGTCCAGA  1479

Query 1291  GCCCTCTTGCCACTGGATAAACAGGCCCTTGGTGACATCCCCCAGGCTCCCCATGACTCTCCTCCAGTCTCTCC  1364
            |..||.|||||.|||||||.||||||.||..||||.|.|||||||.||||.|||||||   ||||||.|..|||
Sbjct 1480  GTGCTGTTGCCCCTGGATACACAGGCTCTCAGTGATACCCCCCAGACTCCTCATGACT---CTCCAGCCCTTCC  1550

Query 1365  AACTCCAAAAACCCCTCCCTGCCAAGCCAGACTTGCCAAGCTGGATGAAGATGAGCTG  1422
            .|||...||.||.||||||||.||.|||||.||.||||||||||||||||||||||||
Sbjct 1551  CACTGTGAACACTCCTCCCTGTCAGGCCAGGCTCGCCAAGCTGGATGAAGATGAGCTG  1608

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.