Nucleotide Global Alignment
Description
- Query:
- TRCN0000481022
- Subject:
- XR_002956167.1
- Aligned Length:
- 5260
- Identities:
- 1495
- Gaps:
- 3730
Alignment
Query 1 -----------------------------------------------ATGTCGGGGGTCCGGGGCCTGTCGCGG 27
|||||||||||||||||||||||||||
Sbjct 1 GCAGTCTGCGCAGGGACTGGCGGGACTGCGCGGCGGCAACAGCAGACATGTCGGGGGTCCGGGGCCTGTCGCGG 74
Query 28 CTGCTGAGCGCTCGGCGCCTGGCGCTGGCCAAGGCGTGGCCAACAGTGTTGCAAACAGGAACCCGAGGTTTTCA 101
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 75 CTGCTGAGCGCTCGGCGCCTGGCGCTGGCCAAGGCGTGGCCAACAGTGTTGCAAACAGGAACCCGAGGTTTTCA 148
Query 102 CTTCACTGTTGATGGGAACAAGAGGGCATCTGCTAAAGTTTCAGATTCCATTTCTGCTCAGTATCCAGTAGTGG 175
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 149 CTTCACTGTTGATGGGAACAAGAGGGCATCTGCTAAAGTTTCAGATTCCATTTCTGCTCAGTATCCAGTAGTGG 222
Query 176 ATCATGAATTTGATGCAGTGGTGGTAGGCGCTGGAGGGGCAGGCTTGCGAGCTGCATTTGGCCTTTCTGAGGCA 249
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 ATCATGAATTTGATGCAGTGGTGGTAGGCGCTGGAGGGGCAGGCTTGCGAGCTGCATTTGGCCTTTCTGAGGCA 296
Query 250 GGGTTTAATACAGCATGTGTTACCAAGCTGTTTCCTACCAGGTCACACACTGTTGCAGCGCAGGGAGGAATCAA 323
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||
Sbjct 297 GGGTTTAATACAGCATGTGTTACCAAGCTGTTTCCTACCAGGTCACACACTGTTGCAGCACAGGGAGGAATCAA 370
Query 324 TGCTGCTCTGGGGAACATGGAGGAGGACAACTGGAGGTGGCATTTCTACG------------------------ 373
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 TGCTGCTCTGGGGAACATGGAGGAGGACAACTGGAGGTGGCATTTCTACGACACCGTGAAGGGCTCCGACTGGC 444
Query 374 -------------------------------------------------------------------------- 373
Sbjct 445 TGGGGGACCAGGATGCCATCCACTACATGACGGAGCAGGCCCCCGCCGCCGTGGTCGAGCTAGAAAATTATGGC 518
Query 374 -------------------------------------------------------------------------- 373
Sbjct 519 ATGCCGTTTAGCAGAACTGAAGATGGGAAGATTTATCAGCGTGCATTTGGTGGACAGAGCCTCAAGTTTGGAAA 592
Query 374 -------------------------------------------------------------------------- 373
Sbjct 593 GGGCGGGCAGGCCCATCGGTGCTGCTGTGTGGCTGATCGGACTGGCCACTCGCTATTGCACACCTTATATGGAA 666
Query 374 -------------------------------------------------------------------------- 373
Sbjct 667 GGTCTCTGCGATATGATACCAGCTATTTTGTGGAGTATTTTGCCTTGGATCTCCTGATGGAGAATGGGGAGTGC 740
Query 374 -------------------------------------------------------------------------- 373
Sbjct 741 CGTGGTGTCATCGCACTGTGCATAGAGGACGGGTCCATCCATCGCATAAGAGCAAAGAACACTGTTGTTGCCAC 814
Query 374 -----------------------------------------ACACCAGCACTGGCGACGGCACGGCCATGATCA 406
|||||||||||||||||||||||||||||||||
Sbjct 815 AGGAGGCTACGGGCGCACCTACTTCAGCTGCACGTCTGCCCACACCAGCACTGGCGACGGCACGGCCATGATCA 888
Query 407 CCAGGGCAGGCCTTCCTTGCCAGGACCTAGAGTTTGTTCAGTTCCACCCCACAGGCATATATGGTGCTGGTTGT 480
|||||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||||||||||||
Sbjct 889 CCAGGGCAGGCCTTCCTTGCCAGGACCTAGAGTTTGTTCAGTTCCACCCTACAGGCATATATGGTGCTGGTTGT 962
Query 481 CTCATTACGGAAGGATGTCGTGGAGAGGGAGGCATTCTCATTAACAGTCAAGGCGAAAGGTTTATGGAGCGATA 554
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 CTCATTACGGAAGGATGTCGTGGAGAGGGAGGCATTCTCATTAACAGTCAAGGCGAAAGGTTTATGGAGCGATA 1036
Query 555 CGCCCCTGTCGCGAAGGACCTGGCGTCTAGAGATGTGGTGTCTCGGTCGATGACTCTGGAGATCCGAGAAGGAA 628
||||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||||||||||
Sbjct 1037 CGCCCCTGTCGCGAAGGACCTGGCGTCTAGAGATGTGGTGTCTCGGTCCATGACTCTGGAGATCCGAGAAGGAA 1110
Query 629 GAGGCTGTGGCCCTGAGAAAGATCACGTCTACCTGCAGCTGCACCACCTACCTCCAGAGCAGCTGGCCACGCGC 702
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 GAGGCTGTGGCCCTGAGAAAGATCACGTCTACCTGCAGCTGCACCACCTACCTCCAGAGCAGCTGGCCACGCGC 1184
Query 703 CTGCCTGGCATTTCAGAGACAGCCATGATCTTTGCTGGCGTGGACGTCACGAAGGAGCCGATCCCTGTCCTCCC 776
||||||||||||||||||||||||||||||||.|||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 CTGCCTGGCATTTCAGAGACAGCCATGATCTTCGCTGGCGTGGACGTCACGAAGGAGCCGATCCCTGTCCTCCC 1258
Query 777 CACCGTGCATTATAACATGGGCGGCATTCCCACCAACTACAAGGGGCAGGTCCTGAGGCACGTGAATGGCCAGG 850
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 CACCGTGCATTATAACATGGGCGGCATTCCCACCAACTACAAGGGGCAGGTCCTGAGGCACGTGAATGGCCAGG 1332
Query 851 ATCAGATTGTGCCCGGCCTGTACGCCTGTGGGGAGGCCGCCTGTGCCTCGGTACATGGTGCCAACCGCCTCGGG 924
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333 ATCAGATTGTGCCCGGCCTGTACGCCTGTGGGGAGGCCGCCTGTGCCTCGGTACATGGTGCCAACCGCCTCGGG 1406
Query 925 GCAAACTCGCTCTTGGACCTGGTTGTCTTTGGTCGGGCATGTGCCCTGAGCATCGAAGAGTCATGCAGGCCTGG 998
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407 GCAAACTCGCTCTTGGACCTGGTTGTCTTTGGTCGGGCATGTGCCCTGAGCATCGAAGAGTCATGCAGGCCTGG 1480
Query 999 AGATAAAGTCCCTCCAATTAAACCAAACGCTGGGGAAGAATCTGTCATGAATCTTGACAAATTGAGATTTGCTG 1072
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481 AGATAAAGTCCCTCCAATTAAACCAAACGCTGGGGAAGAATCTGTCATGAATCTTGACAAATTGAGATTTGCTG 1554
Query 1073 ATGGAAGCATAAGAACATCGGAACTGCGACTCAGCATGCAGAAGTCAATGCAAAATCATGCTGCCGTGTTCCGT 1146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555 ATGGAAGCATAAGAACATCGGAACTGCGACTCAGCATGCAGAAGTCAATGCAAAATCATGCTGCCGTGTTCCGT 1628
Query 1147 GTGGGAAGCGTGTTGCAAGAAGGTTGTGGGAAAATCAGCAAGCTCTATGGAGACCTAAAGCACCTGAAGACGTT 1220
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629 GTGGGAAGCGTGTTGCAAGAAGGTTGTGGGAAAATCAGCAAGCTCTATGGAGACCTAAAGCACCTGAAGACGTT 1702
Query 1221 CGACCGGGGAATGGTCTGGAACACAGACCTGGTGGAGACCCTGGAGCTGCAGAACCTGATGCTGTGTGCGCTGC 1294
||||||||||||||||||||||||.|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703 CGACCGGGGAATGGTCTGGAACACGGACCTGGTGGAGACCCTGGAGCTGCAGAACCTGATGCTGTGTGCGCTGC 1776
Query 1295 AGACCATCTACGGAGCAGAGGCGCGGAAGGAGTCACGGGGCGCGCATGCCAGGGAAGACTACAAGGTGCGGATT 1368
||||||||||||||||||||||.|||||||||||||||||||||||||||||||||||||||||||||.|..||
Sbjct 1777 AGACCATCTACGGAGCAGAGGCACGGAAGGAGTCACGGGGCGCGCATGCCAGGGAAGACTACAAGGTGGGCCTT 1850
Query 1369 GATGAGTACGATTACT--CCAAGCCCA---------------TCCAG---------GGG--------------- 1401
|| |||.||||| |||.| |||
Sbjct 1851 --------------CTCACCACGCCCACCTGCACCTGCCTTTTCCTGCCACCTGGTGGGACTCAGCCCCACCCC 1910
Query 1402 -------------------------------CAA---------CAGAAGAAGCC-----------------CTT 1418
||| ||.||.|.||| |||
Sbjct 1911 TGCATTTTCTCTGCATTTTCTTTCGTTGCCCCAAAAGTAAATCCAAAAAATGCCTTTTTCCCCCCTGGTAACTT 1984
Query 1419 TGA-----------------------GGAGCACTG-GAGGAAGCACACCCTGTCCTT--TGTGG---------- 1456
||| |||.||||| | |||.|.||||| |.|||
Sbjct 1985 TGATCCCTGGGTTCTCGCCATCTTCTGGATCACTGTG---------ACCTTTTCCTTGCTTTGGGTCGGCATCC 2049
Query 1457 AC-GTTG---GCACTGG-----------------------------GAAGGTCA---------------CT--- 1479
|| |.|| |||.||| |||||.|| ||
Sbjct 2050 ACTGATGCCAGCAGTGGCATCTCCAAGCCAATGTGCTTTGCTGTTAGAAGGCCAAGGTTAGAAGTGCAGCTAGA 2123
Query 1480 ----------CTGGAATATAGA--CCCGT------AAT--CGACAAAAC-----TTTGAACGAGGCTG-ACTGT 1527
|.|||| |||.| ||.|| ||| |||..||.| ||| |.||.||| .||||
Sbjct 2124 GTGGCAAGACCAGGAA-ATAAATGCCAGTTTATTAAATAACGAGTAAGCCATCATTT---CAAGCCTGCCCTGT 2193
Query 1528 ---------------------------------GCCACCGT------CCCGCC--------------------- 1541
|||||||| ||.|||
Sbjct 2194 GGAGGAAATGCCAGTTTATTAAATAACGAGTAAGCCACCGTTTCAAACCTGCCCTGTGGAGGAAATGCCAGTTT 2267
Query 1542 ---------------AGCCA----TTCGCTCCTAC--------------------------------------- 1557
||||| |||...|||.|
Sbjct 2268 ATTAAATAACGAGTAAGCCACCGTTTCAAACCTGCCCTGTGGAGGAAATGCCAGTTTATTAAATAACGAGTAAG 2341
Query 1558 -------------------------------------------------------------------------- 1557
Sbjct 2342 CCACCGTTTCAAGCCTGCCCTGTGGAGGAAATGCCAGTTTATTAAATAACGAGTAAGCCACCGTTTCAGACCTG 2415
Query 1558 -------------------------------------------------------------------------- 1557
Sbjct 2416 CCCTGTGGTGGAAATGCCAGTTTATTAAATAACGAGTAAGCCACTGTTTCAAACCTGCCCTGTGGAGGAAATGC 2489
Query 1558 -------------------------------------------------------------------------- 1557
Sbjct 2490 CAGTTTATTAACGAGTAAGTCACTGTTTCAAACCTGTCCTGTGGAGGAAATGCCAGTTTATTAACGAATAAGCC 2563
Query 1558 -------------------------------------------------------------------------- 1557
Sbjct 2564 ACCGTTTCAAACCTGCCCTGTGAAGGAAATGCCAGTTTATTAAATAAGGAGTAAGCCACCGTTTCAAGCCTGCC 2637
Query 1558 -------------------------------------------------------------------------- 1557
Sbjct 2638 CTGTGGAGGAAATGCCCGTTTATTAAATAACGAGTAAGCCACCGTTTCAAGCCTGCCCTGTGGAGGAAATGCCC 2711
Query 1558 -------------------------------------------------------------------------- 1557
Sbjct 2712 GTTTATTAAATAAGGAGTAAGCCACCATTTCAAGCCTGCCCTGTGGAGGAAATGCCAGTTTATTAAATAACGAG 2785
Query 1558 -------------------------------------------------------------------------- 1557
Sbjct 2786 TAAGCCACCGTTTCAAGCCTGCCCTGTGGAGGAAATGCCAGTTTATTAAATAACGAGTAAGCCACCATTTCAAA 2859
Query 1558 -------------------------------------------------------------------------- 1557
Sbjct 2860 CCTGCCCTGTGGAGGAAATGCCAGTTTATTAACGAGTAAGTCACCGTTTCAAACCTGCCCTGTGGAGGAAATGC 2933
Query 1558 -------------------------------------------------------------------------- 1557
Sbjct 2934 CAGTTTAGTAACGAGTAAGTCACCGTTTTAAGCCTGTCCTGTGGAGGAAATGCCAGTTTATTAACGAGTAAGCC 3007
Query 1558 -------------------------------------------------------------------------- 1557
Sbjct 3008 ACCGTTTCAAACCTGCCCTGTGGAGGAAGTGCCAGTTTATTAAATAATGAGTAAGTCACCGTTTCAAGCCTGCC 3081
Query 1558 -------------------------------------------------------------------------- 1557
Sbjct 3082 CTGTGGAGGAAATGCCAGTTTATTAAATAACGAGTAAGTCACCGTTTCATACCTGCCCTGTGGAGGAAATGCCA 3155
Query 1558 -------------------------------------------------------------------------- 1557
Sbjct 3156 GTTTATTAACGAGTAAGCCACCGTTTCAGACCTGCCCTGTGGAGGAAAATGCCAGTTTATTAACAAGTAAGTCA 3229
Query 1558 -------------------------------------------------------------------------- 1557
Sbjct 3230 CTGTTTCAGACCTGCCCTGTGGATGAAATGCCAGTTTATTAATGAGTAAGTCACCATTTCAGACCTGCGCTGTG 3303
Query 1558 -------------------------------------------------------------------------- 1557
Sbjct 3304 GAGGAAATGCCAGTTTATTAAATAAGGAGTAAGCCACCATTTCAGACCTGTCCTGTGGTTTGGAAAAGGTATTA 3377
Query 1558 -------------------------------------------------------------------------- 1557
Sbjct 3378 TAGAGCCTGCCCTGTGGTCACTTGTTCTTCAGATGAACTGATTTTTGTGCAGAGCGCACGTGTTGGATTCTGCC 3451
Query 1558 -------------------------------------------------------------------------- 1557
Sbjct 3452 TGGTAAGAGTTTTTCCCATATGATAGCAAAAAACGACGGAAAGGGAAGCTTGGGATGCAAATGCAAGTTCAGGA 3525
Query 1558 -------------------------------------------------------------------------- 1557
Sbjct 3526 TAAACCACATCAGCAAAAGGACAAAGGCTCCACAAGGCAGGCGCACAGGCTGGTTCAGGACCGTGTGTAGGCGG 3599
Query 1558 -------------------------------------------------------------------------- 1557
Sbjct 3600 CTGGTGGCAGCCTTTCCAGTCAGCTGAACATGGTGAATGGGAAAATCATTTTTATTCACCATGAAATTTTACTG 3673
Query 1558 -------------------------------------------------------------------------- 1557
Sbjct 3674 ATTTACCCTCCACTAGAATATGCTGATGGCTGTGATCACTGCTCAGAACTTGCTCTTGTCTCCTTGTATGTATT 3747
Query 1558 -------------------------------------------------------------------------- 1557
Sbjct 3748 AAGAGTTTCCTGCAAAGTATATGAATCCGTGTTTGCCAGAATACAGAATAATAGTAAATTTATTATTTTTATTT 3821
Query 1558 -------------------------------------------------------------------------- 1557
Sbjct 3822 TTATTTTTTTGAGAAGGAATCTCACTGTCCCCCAGGCTGGAGTGCAGTGGCGTGATCTCAGCTCACTGCAACCT 3895
Query 1558 -------------------------------------------------------------------------- 1557
Sbjct 3896 CTGCCTCCCGGGTTCAAGTGATTCTCCTGCCTCAGCCTCCCAAGCAGCTGGGATTACAGACACACTGCCACCAT 3969
Query 1558 -------------------------------------------------------------------------- 1557
Sbjct 3970 GCCTAATTTTGTATTTTCAGTAGAGATGGGGTTTCACCATATTGGCCGGGCTGGTCTCGAACTCCTGACCTCAA 4043
Query 1558 -------------------------------------------------------------------------- 1557
Sbjct 4044 GTGAACCACCCACCTCGGCCTCCCAAAGTGCTAGGGTTACAGGCATGAGCCACTGTGCCTGGCCAGTGCATAAA 4117
Query 1558 -------------------------------------------------------------------------- 1557
Sbjct 4118 TTTAGTTGGTCACAGTCAGTTTTAATTAGAATAGAAGCCAGGTGCAGTGCCTCACACCTGTAATCCCAGCATTT 4191
Query 1558 -------------------------------------------------------------------------- 1557
Sbjct 4192 GGGAGGCTGAGGCAGGCCAATGACTTGAGCCCCAGAGTTGTAGACCAGCCTGGGCAACATGGCGAAACGTGTCT 4265
Query 1558 -------------------------------------------------------------------------- 1557
Sbjct 4266 CTACAAAAACATAAAAAATGAGCCAGGTGTGGTGGTAGCACAGGAGGCTGAGGCAGGAGGATTGATTGAGCCTG 4339
Query 1558 -------------------------------------------------------------------------- 1557
Sbjct 4340 GGAAGTCAAGGCTCCGGCAAGCTGTGATCACACCACTGCACTCCAGCCCAGGTGACATAGCCAGACCCTGTCTC 4413
Query 1558 -------------------------------------------------------------------------- 1557
Sbjct 4414 AAAAAAAAAATTTTTTTTTAATAAAAACAGGCTGAAAGAAAAGATTGAGGTAGTCTCCCAGCACATGGAGCAAA 4487
Query 1558 -------------------------------------------------------------------------- 1557
Sbjct 4488 AAGACAAAGTATTTGATAAACTCTTAGGTACATAAAGGATGCTTAAGGGAACATGCGGACATGGATTACTGTGG 4561
Query 1558 -------------------------------------------------------------------------- 1557
Sbjct 4562 ACTCACTGCTGGCTGCACACCCCCTGGCCAGCCATGCGGCCTCCGTGGGTTCTGAACATGTTGATGGTGCCAAC 4635
Query 1558 -------------------------------------------------------------------------- 1557
Sbjct 4636 CTCCTGGGCTGAAGTGGAAATGGAATGAGTTCTAGGGCATCTGTCTCTTAGATCATGTTAATGTCTGCTGTGTT 4709
Query 1558 -------------------------------------------------------------------------- 1557
Sbjct 4710 TTTTCTGTATTGCTCTGTTAGAGTAATAAGAAACGTGATGGTGTTTCTGGCCTCAGGTGCGGATTGATGAGTAC 4783
Query 1558 -------------------------------------------------------------------------- 1557
Sbjct 4784 GATTACTCCAAGCCCATCCAGGGGCAACAGAAGAAGCCCTTTGAGGAGCACTGGAGGAAGCACACCCTGTCCTA 4857
Query 1558 -------------------------------------------------------------------------- 1557
Sbjct 4858 TGTGGACGTTGGCACTGGGAAGGTCACTCTGGAATATAGACCCGTGATCGACAAAACTTTGAACGAGGCTGACT 4931
Query 1558 -------------------------------------------------------------------------- 1557
Sbjct 4932 GTGCCACCGTCCCGCCAGCCATTCGCTCCTACTGATGAGACAAGATGTGGTGATGACAGAATCAGCTTTTGTAA 5005
Query 1558 -------------------------------------------------------------------------- 1557
Sbjct 5006 TTATGTATAATAGCTCATGCATGTGTCCATGTCATAACTGTCTTCATACGCTTCTGCACTCTGGGGAAGAAGGA 5079
Query 1558 -------------------------------------------------------------------------- 1557
Sbjct 5080 GTACATTGAAGGGAGATTGGCACCTAGTGGCTGGGAGCTTGCCAGGAACCCAGTGGCCAGGGAGCGTGGCACTT 5153
Query 1558 -------------------------------------------------------------------------- 1557
Sbjct 5154 ACCTTTGTCCCTTGCTTCATTCTTGTGAGATGATAAAACTGGGCACAGCTCTTAAATAAAATATAAATGAACAA 5227
Query 1558 ------ 1557
Sbjct 5228 ACTTTC 5233
