Nucleotide Global Alignment

Description

• Query: TRCN0000481156
• Subject: XM_006505984.3
• Aligned Length: 3583
• Identities: 2159
• Gaps: 1145

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ATGCGGTGCCTCCTGCTGTGCTGGGACAGAGCCCGGGGGTCGCCCTGTGACCCTTGCCTCCTTTCCCCTCCCCC  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  CTCCTCCACCTGGAGAAACCCCGCCAGCGCTTCCCAGTCCCGAGCCTGCGGGCGGGAGGGAGTTAGAAGCATCT  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  CAGGAATTTGCCTCACACTGCTGGACTCGCCCGGAGTGGGTGAAAGCTTAGTTCAAGCTGAGCAGCCTGGGCTA  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  GAGGGACCTGATCCAAAATTGGACCTGCTTGTGTGGCCTCGGGCAGCCCCTCCTGCTGGATCTCGGTCTCGGGG  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  GTCTTCCTGTGTTGAGGGCGAGGCCCCCAGCAGCGAGACTGGCACATCGCTGGACAGCCCCTCAGCCTACCATC  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  AGGGTCCCCTGGTACCTGGTTCCAGCCTGAGTCCAGACCACTACGAGCACACATCAGTGGGCGCCTATGGGCTG  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  TACGCAGGGCCAGGACCACAACAGCGCACACGGAGGCCCCGGCTGCAGCACTCGACCTCAGTCCTGCGCAAGCA  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  GGCTGAGGAGGAGGCCATCAAGCGCTCTCGGTCACTCTCTGAGAGCTATGAGCTCTCTTCAGATCTGCAAGACA  592

Query    1  -----------ATGCTAGAACGAAAGTATGGGGGGCGCCTGGTAACCCGCCATGCGGCCCGCACCATCCAGACG  63
                       |||||||||||.|||||||||||.|||||.||.|||||||||||.||||||||||||||||||
Sbjct  593  AGCAGGTGGAAATGCTAGAACGCAAGTATGGGGGACGCCTCGTGACCCGCCATGCAGCCCGCACCATCCAGACG  666

Query   64  GCGTTTCGCCAGTACCAGATGAACAAGAACTTCGAGCGCTTGCGCAGCTCCATGTCAGAGAACCGCATGTCACG  137
            |||||.|||||.||||||||||||||||||||.||||||.||||||||||||||||.|||||||||||||||||
Sbjct  667  GCGTTCCGCCAATACCAGATGAACAAGAACTTTGAGCGCCTGCGCAGCTCCATGTCGGAGAACCGCATGTCACG  740

Query  138  CCGGATTGTGCTGTCCAACATGAGGATGCAGTTCTCCTTTGAGGGGCCTGAGAAAGTGCACAGCTCCTACTTCG  211
            .||.|||||||||||||||||||||||||||||||||||||||||.||.|||||.|||||||||||||||||.|
Sbjct  741  TCGCATTGTGCTGTCCAACATGAGGATGCAGTTCTCCTTTGAGGGCCCCGAGAAGGTGCACAGCTCCTACTTTG  814

Query  212  AGGGGAAGCAGGTCTCAGTGACTAACGACGGCTCCCAGCTGGGAGCCCTGGTGTCCCCTGAGTGTGGTGACCTC  285
            ||||.|||||||||||.||||||||.||.||||||||||||||.|||||||||.|..|.||.|||||.|||||.
Sbjct  815  AGGGAAAGCAGGTCTCTGTGACTAATGATGGCTCCCAGCTGGGGGCCCTGGTGCCATCAGAATGTGGAGACCTT  888

Query  286  AGCGAGCCCACCACCCTCAAGTCTCCGGCCCCCTCCAGTGACTTTGCGGACGCCATCACCGAGCTGGAGGACGC  359
            ||.|| ||||  .|||||||||||||.||||||||||||||||||||.||.||||||||.||.||||||||.||
Sbjct  889  AGTGA-CCCA--GCCCTCAAGTCTCCAGCCCCCTCCAGTGACTTTGCAGATGCCATCACGGAACTGGAGGATGC  959

Query  360  CTTCTCTAGGCAAGTGAAATCACTGGCCGAGTCCATCGACGATGCCCTCAACTGCCGCAGCCTGCACACTGAGG  433
            ||||||.|||||.||||||||.|||||.||.||||||||.|||||||||||.|||||||||||.||||.|||||
Sbjct  960  CTTCTCCAGGCAGGTGAAATCCCTGGCTGAATCCATCGATGATGCCCTCAATTGCCGCAGCCTACACAGTGAGG  1033

Query  434  AGGCACCGGCCCTGGATGCGGCGCGGGCCCGGGACACCGAACCCCAGACAGCCCTGCACGGCATGGACCACCGC  507
            |||.|||.|||...||..||||.|||||.||||||||.||.|||.|..|||..||.||.|||||||||||||||
Sbjct 1034  AGGTACCAGCCTCAGACACGGCCCGGGCTCGGGACACTGAGCCCAAACCAGGTCTACATGGCATGGACCACCGC  1107

Query  508  AAACTGGACGAGATGACGGCCTCGTACAGTGATGTCACCCTGTACATCGATGAGGAGGAGCTGTCGCCCCCTCT  581
            ||||||||.||||||||.||||||||.||||||||.|||||.|||||.||||||||.||||||||.||.||.||
Sbjct 1108  AAACTGGATGAGATGACAGCCTCGTATAGTGATGTGACCCTCTACATTGATGAGGAAGAGCTGTCACCACCGCT  1181

Query  582  GCCCCTCTCGCAGGCAGGGGACCGGCCGTCCAGCACCGAGTCGGACCTGCGGCTACGGGCTGGGGGCGCAGCCC  655
            .||.|||||.|||||.||.||.|||||.||||||||.|||||||||||||||||..||.|||||||.|||||||
Sbjct 1182  TCCACTCTCACAGGCTGGCGATCGGCCCTCCAGCACAGAGTCGGACCTGCGGCTGAGGTCTGGGGGTGCAGCCC  1255

Query  656  CAGACTACTGGGCCCTGGCCCACAAAGAGGACAAGGCTGACACGGACACGAGCTGCCGGAGCACGCCGTCGCTG  729
            ..||||||||||||.||||||||||||||||||||||||||||||||||.||||||||.|||||.||.||.|||
Sbjct 1256  AGGACTACTGGGCCTTGGCCCACAAAGAGGACAAGGCTGACACGGACACAAGCTGCCGAAGCACACCATCACTG  1329

Query  730  GAGCGGCAGGNGCAGCGGCTGCGGGTGGAGCATCTGCCGCTGCTCACCATCGAGCCACCCAGCGACAGCTCTGT  803
            |||||||..|.||..|||||||||||||||||.|||||.|||||.|||||.|||||||||||.||.|||||.||
Sbjct 1330  GAGCGGCCAGAGCCACGGCTGCGGGTGGAGCACCTGCCCCTGCTTACCATTGAGCCACCCAGTGATAGCTCCGT  1403

Query  804  GGACCTTAGTGACCGCTCGGAGCGGGGGTCACTCAAGAGGCAGAGTGCTTACGAGCGCAGCCTTGGCGGGCAGC  877
            |||.||.|||||||||||.||.||..|.||||||||||||||||||||.||.|||||||||||.||.|||||||
Sbjct 1404  GGAACTCAGTGACCGCTCAGATCGCAGCTCACTCAAGAGGCAGAGTGCCTATGAGCGCAGCCTCGGTGGGCAGC  1477

Query  878  AGGGCAGTCCCAAGCATGGTCCCCACAGCGGCGCCCCCAAGAGCCTCCCCCGGGAGGAGCCTGAGTTGCGGCCC  951
            |||||||.|||||||||||.||||||.|.|||.|||||||..||||||||.|||||||.|||||.||||||||.
Sbjct 1478  AGGGCAGCCCCAAGCATGGCCCCCACGGTGGCCCCCCCAAAGGCCTCCCCAGGGAGGAACCTGAATTGCGGCCT  1551

Query  952  CGGCCCCCCAGGCCCCTGGACAGCCACTTGGCCATCAATGGCTCAGCCAACCGGCAGAGCAAGTCTGAGTCGGA  1025
            |||||||||||.||.||.||.||.|||.|.|||||||||||.||||||||||||||||||||.||||||||.||
Sbjct 1552  CGGCCCCCCAGACCTCTTGAGAGTCACCTAGCCATCAATGGTTCAGCCAACCGGCAGAGCAAATCTGAGTCTGA  1625

Query 1026  CTACTCAGACGGTGACAATGACAGCATCAACAGCACGTCCAACTCCAACGATACCATCAACTGCAGCTCCGAGT  1099
            |||||||||.||.|||||||||||||||||||||||.|||||||||||.||.|||||.|||||||||||.||||
Sbjct 1626  CTACTCAGATGGGGACAATGACAGCATCAACAGCACCTCCAACTCCAATGACACCATAAACTGCAGCTCTGAGT  1699

Query 1100  CATCGTCCCGTGACAGCCTGCGGGAGCAGACGCTCAGCAAGCAGACCTACCACAAGGAGGCCCGCAACAGCTGG  1173
            |.||.||.||.||||||||||||||.|||||.||||||||||||||.||||||||||||.||||||||||||||
Sbjct 1700  CCTCATCACGGGACAGCCTGCGGGAACAGACACTCAGCAAGCAGACATACCACAAGGAGACCCGCAACAGCTGG  1773

Query 1174  GACTCGCCTGCCTTTAGCAACGATGTCATCCGCAAGAGGCACTACCGCATCGGCCTGAACCTCTTCAACAAGAA  1247
            |||||.||.||.||.|||||||||||||||||.||||||||.|||||.||.|||||.||.||||||||||||||
Sbjct 1774  GACTCTCCAGCTTTCAGCAACGATGTCATCCGTAAGAGGCATTACCGAATTGGCCTAAATCTCTTCAACAAGAA  1847

Query 1248  GCCTGAGAAGGGAGTCCAGTACCTCATCGAGCGTGGCTTTGTGCCCGACACGCCCGTCGGGGTGGCCCACTTCC  1321
            ||||||||||||..|||||||.|||||.|||||.|||||.||||||||||||||.||.||.|||||||||||||
Sbjct 1848  GCCTGAGAAGGGCATCCAGTATCTCATTGAGCGCGGCTTCGTGCCCGACACGCCAGTGGGAGTGGCCCACTTCC  1921

Query 1322  TGCTGCAGCGCAAGGGCCTCAGCCGGCAGATGATCGGCGAGTTCCTGGGCAACCGGCAGAAGCAGTTCAACCGT  1395
            |||||||||||||||||||||||||.|||||||||||.|||||||||||.||||||||||||||||||||||||
Sbjct 1922  TGCTGCAGCGCAAGGGCCTCAGCCGCCAGATGATCGGTGAGTTCCTGGGAAACCGGCAGAAGCAGTTCAACCGT  1995

Query 1396  GACGTGCTCGACTGCGTCGTGGACGAGATGGACTTCTCTACCATGGAGCTGGATGAGGCCCTCAGGAAATTCCA  1469
            ||.|||||||||||.||.|||||||||||||||||||||.||||||||||.|||||.||||||.||||.|||||
Sbjct 1996  GATGTGCTCGACTGTGTTGTGGACGAGATGGACTTCTCTGCCATGGAGCTAGATGAAGCCCTCCGGAAGTTCCA  2069

Query 1470  GGCGCACATCCGTGTCCAAGGGGAGGCTCAGAAAGTGGAGCGGCTCATAGAGGCGTTCAGCCAGCGCTACTGCA  1543
            |||.||||||||.|||||||||||||||||||||||||||||||||||.|||||.|||||||||||.|||||..
Sbjct 2070  GGCACACATCCGAGTCCAAGGGGAGGCTCAGAAAGTGGAGCGGCTCATCGAGGCATTCAGCCAGCGGTACTGTG  2143

Query 1544  TCTGCAACCCTGGGGTGGTGCGGCAATTCCGGAACCCAGACACCATTTTCATCCTGGCCTTCGCCATCATCCTG  1617
            ||||||||||.|||||||||||.||.||||||||||||||||||||.|||||||||||||||||||||||||||
Sbjct 2144  TCTGCAACCCAGGGGTGGTGCGACAGTTCCGGAACCCAGACACCATCTTCATCCTGGCCTTCGCCATCATCCTG  2217

Query 1618  CTGAACACCGACATGTACAGCCCCAATGTCAAGCCCGAGCGGAAAATGAAGCTAGAGGACTTCATCAAGAACCT  1691
            ||.|||||.||||||||||||||||||||||||||.|||||.|||||||||||.||||||||..||||||||||
Sbjct 2218  CTCAACACAGACATGTACAGCCCCAATGTCAAGCCAGAGCGCAAAATGAAGCTGGAGGACTTTGTCAAGAACCT  2291

Query 1692  CCGAGGTGTGGACGATGGTGAGGACATTCCCCGTGAGATGCTGATGGGGATCTATGAACGGATCCGTAAGCGAG  1765
            ||||||||||||.||.|||||.|||||||||||.||||.|||.||.|||||||||||.||.|||||||||||||
Sbjct 2292  CCGAGGTGTGGATGACGGTGAAGACATTCCCCGGGAGACGCTAATTGGGATCTATGAGCGAATCCGTAAGCGAG  2365

Query 1766  AGCTAAAGACCAATGAGGACCATGTGTCCCAGGTGCAGAAGGTGGAGAAGCTCATTGTGGGGAAAAAGCCGATC  1839
            |.||.||||||||.||||||||.||||||||||||||||||||.|||||||||||.|||||.||.||||||||.
Sbjct 2366  AACTGAAGACCAACGAGGACCACGTGTCCCAGGTGCAGAAGGTTGAGAAGCTCATCGTGGGCAAGAAGCCGATT  2439

Query 1840  GGATCCCTGCATCCCGGGCTCGGCTGTGTGCTCTCTCTGCCCCACCGTCGGTTGGTCTGCTACTGCCGGCTCTT  1913
            |||||||||||||..||.||.|||||||||||.|||||.|||||.||.||..|.|||||||||||||||||.||
Sbjct 2440  GGATCCCTGCATCATGGTCTTGGCTGTGTGCTGTCTCTTCCCCATCGACGACTAGTCTGCTACTGCCGGCTTTT  2513

Query 1914  TGAGGTTCCAGACCCAAACAAGCCCCAGAAACTCGGACTACACCAGCGAGAAATCTTCCTGTTCAACGACCTCC  1987
            |||.|||||.|||||.|||||.||||||||.||.|||||||||||||||||.|||||||||||.||.|||||||
Sbjct 2514  TGAAGTTCCTGACCCCAACAAACCCCAGAAGCTGGGACTACACCAGCGAGAGATCTTCCTGTTTAATGACCTCC  2587

Query 1988  TGGTGGTCACCAAGATCTTCCAGAAGAAGAAGAACTCGGTGACGTACAGCTTCCGACAGTCCTTCTCCTTGTAC  2061
            |||||||||||||||||||||||||||||||||||||||||||.|||||||||||.||||||||||||.|.|||
Sbjct 2588  TGGTGGTCACCAAGATCTTCCAGAAGAAGAAGAACTCGGTGACATACAGCTTCCGGCAGTCCTTCTCCCTCTAC  2661

Query 2062  GGCATGCAGGTCCTGCTCTTCGAGAACCAGTACTACCCCAATGGCATCCGGCTCACCTCGTCTGTCCCCGGAGC  2135
            |||||||||||||||||||||||||||||||||||.|||||||||||||||||.||.||..|||||||.|||||
Sbjct 2662  GGCATGCAGGTCCTGCTCTTCGAGAACCAGTACTATCCCAATGGCATCCGGCTGACGTCTGCTGTCCCTGGAGC  2735

Query 2136  AGATATCAAAGTGTTAATAAACTTCAACGCCCCCAACCCTCAAGACCGGAAGAAATTCACCGATGACCTGCGGG  2209
            |||.|||||||||.||||||||||||||||.|||||.|||||.|||||||||||.|||||.||.||||||||||
Sbjct 2736  AGACATCAAAGTGCTAATAAACTTCAACGCTCCCAATCCTCAGGACCGGAAGAAGTTCACTGACGACCTGCGGG  2809

Query 2210  AGTCCATTGCGGAAGTCCAAGAGATGGAGAAGCACAGGATAGAGTCGGAGCTCGAGAAGCAGAAAGGCGTCGTG  2283
            ||||..|.||.|||||.||||||||||||||.|||.|.|||||||||||||||||||||||||||||.||||||
Sbjct 2810  AGTCTGTCGCTGAAGTGCAAGAGATGGAGAAACACCGAATAGAGTCGGAGCTCGAGAAGCAGAAAGGTGTCGTG  2883

Query 2284  CGGCCCAGCATGTCCCAGTGCTCTAGCCTCAAAAAGGAGTCGGGCAACGGAACACTGAGCCGGGCCTGCCTGGA  2357
            ||||||||||||||.||||||||.|||||||||||||||||.||||||||.|||||||||.||||.||||||||
Sbjct 2884  CGGCCCAGCATGTCACAGTGCTCCAGCCTCAAAAAGGAGTCAGGCAACGGGACACTGAGCAGGGCTTGCCTGGA  2957

Query 2358  CGACAGCTATGCCAGCGGTGAGGGCCTCAAGCGCAGCGCCCTCAGCAGCTCCCTGCGGGACCTCTCGGAAGCCG  2431
            .||||||||||||||.||.||||||||||||||||||||||||||||||||.|||.|.||||||||.|||| ||
Sbjct 2958  TGACAGCTATGCCAGTGGCGAGGGCCTCAAGCGCAGCGCCCTCAGCAGCTCACTGAGAGACCTCTCAGAAG-CG  3030

Query 2432  GGG---------------------------------------------------TCCATCAT------------  2442
            |||                                                   ||||||||            
Sbjct 3031  GGGAAGCGAGGGCGTCGCAGCAGTGCGGGATCGCTAGAGAGCAATGTGGAAGGCTCCATCATTAGCAGTCCTCA  3104

Query 2443  --------------------------------------------------------------------------  2442
                                                                                      
Sbjct 3105  CATGCGCCGGAGAGCGACCTCAACACGAGAGTGCCCATCTCGCCCCCCCCAGCCCGTGCCTAACTCCTCCTCTC  3178

Query 2443  --------------------------------------------------------------------------  2442
                                                                                      
Sbjct 3179  TCCTGGGTTCTTTGTTTGGGAGCAGGAGAGGGAAGCCCCCTCCCCAGGCCCACCCACCCTCAGCCCCTCCCCCA  3252

Query 2443  --------------------------------------------------------------------------  2442
                                                                                      
Sbjct 3253  GCACCCCCTCACGCCCATCACCCTGGGCCCTCAGAAGGCCCACTGCATGGACATCATGCACAGTACTGCCATGC  3326

Query 2443  --------------------------------------------------------------------------  2442
                                                                                      
Sbjct 3327  ACAGCAGAATCCTCCGCCCTATCACCACCACCACCACTACCACCCACCCCCCCACCTGCAGCACACCCACCAGT  3400

Query 2443  --------------------------------------------------------------------------  2442
                                                                                      
Sbjct 3401  ACCACCATGGCCCACACGGCGGGCACCCCCCGTATGGGGCCCATGCACACAGCCACCCGCCTCTGCCCACAGCT  3474

Query 2443  --------------------------------------------------------------------------  2442
                                                                                      
Sbjct 3475  CACCCTGGTCATGCAGGGCACTCAGCGCATCATCATGGGCAGCCCCCTGCCCCACCGCCCCCCACCAGCAGCAA  3548

Query 2443  -------------------------------  2442
                                           
Sbjct 3549  GGCCAAGCCCAGCGGCATCAGCACAGTTGTG  3579