Nucleotide Global Alignment

Description

• Query: TRCN0000481156
• Subject: XM_006505985.3
• Aligned Length: 3355
• Identities: 2159
• Gaps: 917

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ATGCTCAAGTTCAAGGCCTTTTGCCTGGATTACTGGCAGTTCCTGTGCCTGCAGCCGTTGCATGGGGCCTATAA  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  AAGTGTTGAGGGCGAGGCCCCCAGCAGCGAGACTGGCACATCGCTGGACAGCCCCTCAGCCTACCATCAGGGTC  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  CCCTGGTACCTGGTTCCAGCCTGAGTCCAGACCACTACGAGCACACATCAGTGGGCGCCTATGGGCTGTACGCA  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  GGGCCAGGACCACAACAGCGCACACGGAGGCCCCGGCTGCAGCACTCGACCTCAGTCCTGCGCAAGCAGGCTGA  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  GGAGGAGGCCATCAAGCGCTCTCGGTCACTCTCTGAGAGCTATGAGCTCTCTTCAGATCTGCAAGACAAGCAGG  370

Query    1  -----ATGCTAGAACGAAAGTATGGGGGGCGCCTGGTAACCCGCCATGCGGCCCGCACCATCCAGACGGCGTTT  69
                 |||||||||||.|||||||||||.|||||.||.|||||||||||.|||||||||||||||||||||||.
Sbjct  371  TGGAAATGCTAGAACGCAAGTATGGGGGACGCCTCGTGACCCGCCATGCAGCCCGCACCATCCAGACGGCGTTC  444

Query   70  CGCCAGTACCAGATGAACAAGAACTTCGAGCGCTTGCGCAGCTCCATGTCAGAGAACCGCATGTCACGCCGGAT  143
            |||||.||||||||||||||||||||.||||||.||||||||||||||||.|||||||||||||||||.||.||
Sbjct  445  CGCCAATACCAGATGAACAAGAACTTTGAGCGCCTGCGCAGCTCCATGTCGGAGAACCGCATGTCACGTCGCAT  518

Query  144  TGTGCTGTCCAACATGAGGATGCAGTTCTCCTTTGAGGGGCCTGAGAAAGTGCACAGCTCCTACTTCGAGGGGA  217
            |||||||||||||||||||||||||||||||||||||||.||.|||||.|||||||||||||||||.|||||.|
Sbjct  519  TGTGCTGTCCAACATGAGGATGCAGTTCTCCTTTGAGGGCCCCGAGAAGGTGCACAGCTCCTACTTTGAGGGAA  592

Query  218  AGCAGGTCTCAGTGACTAACGACGGCTCCCAGCTGGGAGCCCTGGTGTCCCCTGAGTGTGGTGACCTCAGCGAG  291
            ||||||||||.||||||||.||.||||||||||||||.|||||||||.|..|.||.|||||.|||||.||.|| 
Sbjct  593  AGCAGGTCTCTGTGACTAATGATGGCTCCCAGCTGGGGGCCCTGGTGCCATCAGAATGTGGAGACCTTAGTGA-  665

Query  292  CCCACCACCCTCAAGTCTCCGGCCCCCTCCAGTGACTTTGCGGACGCCATCACCGAGCTGGAGGACGCCTTCTC  365
            ||||  .|||||||||||||.||||||||||||||||||||.||.||||||||.||.||||||||.||||||||
Sbjct  666  CCCA--GCCCTCAAGTCTCCAGCCCCCTCCAGTGACTTTGCAGATGCCATCACGGAACTGGAGGATGCCTTCTC  737

Query  366  TAGGCAAGTGAAATCACTGGCCGAGTCCATCGACGATGCCCTCAACTGCCGCAGCCTGCACACTGAGGAGGCAC  439
            .|||||.||||||||.|||||.||.||||||||.|||||||||||.|||||||||||.||||.||||||||.||
Sbjct  738  CAGGCAGGTGAAATCCCTGGCTGAATCCATCGATGATGCCCTCAATTGCCGCAGCCTACACAGTGAGGAGGTAC  811

Query  440  CGGCCCTGGATGCGGCGCGGGCCCGGGACACCGAACCCCAGACAGCCCTGCACGGCATGGACCACCGCAAACTG  513
            |.|||...||..||||.|||||.||||||||.||.|||.|..|||..||.||.|||||||||||||||||||||
Sbjct  812  CAGCCTCAGACACGGCCCGGGCTCGGGACACTGAGCCCAAACCAGGTCTACATGGCATGGACCACCGCAAACTG  885

Query  514  GACGAGATGACGGCCTCGTACAGTGATGTCACCCTGTACATCGATGAGGAGGAGCTGTCGCCCCCTCTGCCCCT  587
            ||.||||||||.||||||||.||||||||.|||||.|||||.||||||||.||||||||.||.||.||.||.||
Sbjct  886  GATGAGATGACAGCCTCGTATAGTGATGTGACCCTCTACATTGATGAGGAAGAGCTGTCACCACCGCTTCCACT  959

Query  588  CTCGCAGGCAGGGGACCGGCCGTCCAGCACCGAGTCGGACCTGCGGCTACGGGCTGGGGGCGCAGCCCCAGACT  661
            |||.|||||.||.||.|||||.||||||||.|||||||||||||||||..||.|||||||.|||||||..||||
Sbjct  960  CTCACAGGCTGGCGATCGGCCCTCCAGCACAGAGTCGGACCTGCGGCTGAGGTCTGGGGGTGCAGCCCAGGACT  1033

Query  662  ACTGGGCCCTGGCCCACAAAGAGGACAAGGCTGACACGGACACGAGCTGCCGGAGCACGCCGTCGCTGGAGCGG  735
            ||||||||.||||||||||||||||||||||||||||||||||.||||||||.|||||.||.||.|||||||||
Sbjct 1034  ACTGGGCCTTGGCCCACAAAGAGGACAAGGCTGACACGGACACAAGCTGCCGAAGCACACCATCACTGGAGCGG  1107

Query  736  CAGGNGCAGCGGCTGCGGGTGGAGCATCTGCCGCTGCTCACCATCGAGCCACCCAGCGACAGCTCTGTGGACCT  809
            |..|.||..|||||||||||||||||.|||||.|||||.|||||.|||||||||||.||.|||||.|||||.||
Sbjct 1108  CCAGAGCCACGGCTGCGGGTGGAGCACCTGCCCCTGCTTACCATTGAGCCACCCAGTGATAGCTCCGTGGAACT  1181

Query  810  TAGTGACCGCTCGGAGCGGGGGTCACTCAAGAGGCAGAGTGCTTACGAGCGCAGCCTTGGCGGGCAGCAGGGCA  883
            .|||||||||||.||.||..|.||||||||||||||||||||.||.|||||||||||.||.|||||||||||||
Sbjct 1182  CAGTGACCGCTCAGATCGCAGCTCACTCAAGAGGCAGAGTGCCTATGAGCGCAGCCTCGGTGGGCAGCAGGGCA  1255

Query  884  GTCCCAAGCATGGTCCCCACAGCGGCGCCCCCAAGAGCCTCCCCCGGGAGGAGCCTGAGTTGCGGCCCCGGCCC  957
            |.|||||||||||.||||||.|.|||.|||||||..||||||||.|||||||.|||||.||||||||.||||||
Sbjct 1256  GCCCCAAGCATGGCCCCCACGGTGGCCCCCCCAAAGGCCTCCCCAGGGAGGAACCTGAATTGCGGCCTCGGCCC  1329

Query  958  CCCAGGCCCCTGGACAGCCACTTGGCCATCAATGGCTCAGCCAACCGGCAGAGCAAGTCTGAGTCGGACTACTC  1031
            |||||.||.||.||.||.|||.|.|||||||||||.||||||||||||||||||||.||||||||.||||||||
Sbjct 1330  CCCAGACCTCTTGAGAGTCACCTAGCCATCAATGGTTCAGCCAACCGGCAGAGCAAATCTGAGTCTGACTACTC  1403

Query 1032  AGACGGTGACAATGACAGCATCAACAGCACGTCCAACTCCAACGATACCATCAACTGCAGCTCCGAGTCATCGT  1105
            |||.||.|||||||||||||||||||||||.|||||||||||.||.|||||.|||||||||||.|||||.||.|
Sbjct 1404  AGATGGGGACAATGACAGCATCAACAGCACCTCCAACTCCAATGACACCATAAACTGCAGCTCTGAGTCCTCAT  1477

Query 1106  CCCGTGACAGCCTGCGGGAGCAGACGCTCAGCAAGCAGACCTACCACAAGGAGGCCCGCAACAGCTGGGACTCG  1179
            |.||.||||||||||||||.|||||.||||||||||||||.||||||||||||.|||||||||||||||||||.
Sbjct 1478  CACGGGACAGCCTGCGGGAACAGACACTCAGCAAGCAGACATACCACAAGGAGACCCGCAACAGCTGGGACTCT  1551

Query 1180  CCTGCCTTTAGCAACGATGTCATCCGCAAGAGGCACTACCGCATCGGCCTGAACCTCTTCAACAAGAAGCCTGA  1253
            ||.||.||.|||||||||||||||||.||||||||.|||||.||.|||||.||.||||||||||||||||||||
Sbjct 1552  CCAGCTTTCAGCAACGATGTCATCCGTAAGAGGCATTACCGAATTGGCCTAAATCTCTTCAACAAGAAGCCTGA  1625

Query 1254  GAAGGGAGTCCAGTACCTCATCGAGCGTGGCTTTGTGCCCGACACGCCCGTCGGGGTGGCCCACTTCCTGCTGC  1327
            ||||||..|||||||.|||||.|||||.|||||.||||||||||||||.||.||.|||||||||||||||||||
Sbjct 1626  GAAGGGCATCCAGTATCTCATTGAGCGCGGCTTCGTGCCCGACACGCCAGTGGGAGTGGCCCACTTCCTGCTGC  1699

Query 1328  AGCGCAAGGGCCTCAGCCGGCAGATGATCGGCGAGTTCCTGGGCAACCGGCAGAAGCAGTTCAACCGTGACGTG  1401
            |||||||||||||||||||.|||||||||||.|||||||||||.||||||||||||||||||||||||||.|||
Sbjct 1700  AGCGCAAGGGCCTCAGCCGCCAGATGATCGGTGAGTTCCTGGGAAACCGGCAGAAGCAGTTCAACCGTGATGTG  1773

Query 1402  CTCGACTGCGTCGTGGACGAGATGGACTTCTCTACCATGGAGCTGGATGAGGCCCTCAGGAAATTCCAGGCGCA  1475
            ||||||||.||.|||||||||||||||||||||.||||||||||.|||||.||||||.||||.||||||||.||
Sbjct 1774  CTCGACTGTGTTGTGGACGAGATGGACTTCTCTGCCATGGAGCTAGATGAAGCCCTCCGGAAGTTCCAGGCACA  1847

Query 1476  CATCCGTGTCCAAGGGGAGGCTCAGAAAGTGGAGCGGCTCATAGAGGCGTTCAGCCAGCGCTACTGCATCTGCA  1549
            ||||||.|||||||||||||||||||||||||||||||||||.|||||.|||||||||||.|||||..||||||
Sbjct 1848  CATCCGAGTCCAAGGGGAGGCTCAGAAAGTGGAGCGGCTCATCGAGGCATTCAGCCAGCGGTACTGTGTCTGCA  1921

Query 1550  ACCCTGGGGTGGTGCGGCAATTCCGGAACCCAGACACCATTTTCATCCTGGCCTTCGCCATCATCCTGCTGAAC  1623
            ||||.|||||||||||.||.||||||||||||||||||||.|||||||||||||||||||||||||||||.|||
Sbjct 1922  ACCCAGGGGTGGTGCGACAGTTCCGGAACCCAGACACCATCTTCATCCTGGCCTTCGCCATCATCCTGCTCAAC  1995

Query 1624  ACCGACATGTACAGCCCCAATGTCAAGCCCGAGCGGAAAATGAAGCTAGAGGACTTCATCAAGAACCTCCGAGG  1697
            ||.||||||||||||||||||||||||||.|||||.|||||||||||.||||||||..||||||||||||||||
Sbjct 1996  ACAGACATGTACAGCCCCAATGTCAAGCCAGAGCGCAAAATGAAGCTGGAGGACTTTGTCAAGAACCTCCGAGG  2069

Query 1698  TGTGGACGATGGTGAGGACATTCCCCGTGAGATGCTGATGGGGATCTATGAACGGATCCGTAAGCGAGAGCTAA  1771
            ||||||.||.|||||.|||||||||||.||||.|||.||.|||||||||||.||.||||||||||||||.||.|
Sbjct 2070  TGTGGATGACGGTGAAGACATTCCCCGGGAGACGCTAATTGGGATCTATGAGCGAATCCGTAAGCGAGAACTGA  2143

Query 1772  AGACCAATGAGGACCATGTGTCCCAGGTGCAGAAGGTGGAGAAGCTCATTGTGGGGAAAAAGCCGATCGGATCC  1845
            |||||||.||||||||.||||||||||||||||||||.|||||||||||.|||||.||.||||||||.||||||
Sbjct 2144  AGACCAACGAGGACCACGTGTCCCAGGTGCAGAAGGTTGAGAAGCTCATCGTGGGCAAGAAGCCGATTGGATCC  2217

Query 1846  CTGCATCCCGGGCTCGGCTGTGTGCTCTCTCTGCCCCACCGTCGGTTGGTCTGCTACTGCCGGCTCTTTGAGGT  1919
            |||||||..||.||.|||||||||||.|||||.|||||.||.||..|.|||||||||||||||||.|||||.||
Sbjct 2218  CTGCATCATGGTCTTGGCTGTGTGCTGTCTCTTCCCCATCGACGACTAGTCTGCTACTGCCGGCTTTTTGAAGT  2291

Query 1920  TCCAGACCCAAACAAGCCCCAGAAACTCGGACTACACCAGCGAGAAATCTTCCTGTTCAACGACCTCCTGGTGG  1993
            |||.|||||.|||||.||||||||.||.|||||||||||||||||.|||||||||||.||.|||||||||||||
Sbjct 2292  TCCTGACCCCAACAAACCCCAGAAGCTGGGACTACACCAGCGAGAGATCTTCCTGTTTAATGACCTCCTGGTGG  2365

Query 1994  TCACCAAGATCTTCCAGAAGAAGAAGAACTCGGTGACGTACAGCTTCCGACAGTCCTTCTCCTTGTACGGCATG  2067
            |||||||||||||||||||||||||||||||||||||.|||||||||||.||||||||||||.|.|||||||||
Sbjct 2366  TCACCAAGATCTTCCAGAAGAAGAAGAACTCGGTGACATACAGCTTCCGGCAGTCCTTCTCCCTCTACGGCATG  2439

Query 2068  CAGGTCCTGCTCTTCGAGAACCAGTACTACCCCAATGGCATCCGGCTCACCTCGTCTGTCCCCGGAGCAGATAT  2141
            |||||||||||||||||||||||||||||.|||||||||||||||||.||.||..|||||||.||||||||.||
Sbjct 2440  CAGGTCCTGCTCTTCGAGAACCAGTACTATCCCAATGGCATCCGGCTGACGTCTGCTGTCCCTGGAGCAGACAT  2513

Query 2142  CAAAGTGTTAATAAACTTCAACGCCCCCAACCCTCAAGACCGGAAGAAATTCACCGATGACCTGCGGGAGTCCA  2215
            |||||||.||||||||||||||||.|||||.|||||.|||||||||||.|||||.||.||||||||||||||..
Sbjct 2514  CAAAGTGCTAATAAACTTCAACGCTCCCAATCCTCAGGACCGGAAGAAGTTCACTGACGACCTGCGGGAGTCTG  2587

Query 2216  TTGCGGAAGTCCAAGAGATGGAGAAGCACAGGATAGAGTCGGAGCTCGAGAAGCAGAAAGGCGTCGTGCGGCCC  2289
            |.||.|||||.||||||||||||||.|||.|.|||||||||||||||||||||||||||||.||||||||||||
Sbjct 2588  TCGCTGAAGTGCAAGAGATGGAGAAACACCGAATAGAGTCGGAGCTCGAGAAGCAGAAAGGTGTCGTGCGGCCC  2661

Query 2290  AGCATGTCCCAGTGCTCTAGCCTCAAAAAGGAGTCGGGCAACGGAACACTGAGCCGGGCCTGCCTGGACGACAG  2363
            ||||||||.||||||||.|||||||||||||||||.||||||||.|||||||||.||||.||||||||.|||||
Sbjct 2662  AGCATGTCACAGTGCTCCAGCCTCAAAAAGGAGTCAGGCAACGGGACACTGAGCAGGGCTTGCCTGGATGACAG  2735

Query 2364  CTATGCCAGCGGTGAGGGCCTCAAGCGCAGCGCCCTCAGCAGCTCCCTGCGGGACCTCTCGGAAGCCGGGG---  2434
            |||||||||.||.||||||||||||||||||||||||||||||||.|||.|.||||||||.|||| |||||   
Sbjct 2736  CTATGCCAGTGGCGAGGGCCTCAAGCGCAGCGCCCTCAGCAGCTCACTGAGAGACCTCTCAGAAG-CGGGGAAG  2808

Query 2435  ------------------------------------------------TCCATCAT------------------  2442
                                                            ||||||||                  
Sbjct 2809  CGAGGGCGTCGCAGCAGTGCGGGATCGCTAGAGAGCAATGTGGAAGGCTCCATCATTAGCAGTCCTCACATGCG  2882

Query 2443  --------------------------------------------------------------------------  2442
                                                                                      
Sbjct 2883  CCGGAGAGCGACCTCAACACGAGAGTGCCCATCTCGCCCCCCCCAGCCCGTGCCTAACTCCTCCTCTCTCCTGG  2956

Query 2443  --------------------------------------------------------------------------  2442
                                                                                      
Sbjct 2957  GTTCTTTGTTTGGGAGCAGGAGAGGGAAGCCCCCTCCCCAGGCCCACCCACCCTCAGCCCCTCCCCCAGCACCC  3030

Query 2443  --------------------------------------------------------------------------  2442
                                                                                      
Sbjct 3031  CCTCACGCCCATCACCCTGGGCCCTCAGAAGGCCCACTGCATGGACATCATGCACAGTACTGCCATGCACAGCA  3104

Query 2443  --------------------------------------------------------------------------  2442
                                                                                      
Sbjct 3105  GAATCCTCCGCCCTATCACCACCACCACCACTACCACCCACCCCCCCACCTGCAGCACACCCACCAGTACCACC  3178

Query 2443  --------------------------------------------------------------------------  2442
                                                                                      
Sbjct 3179  ATGGCCCACACGGCGGGCACCCCCCGTATGGGGCCCATGCACACAGCCACCCGCCTCTGCCCACAGCTCACCCT  3252

Query 2443  --------------------------------------------------------------------------  2442
                                                                                      
Sbjct 3253  GGTCATGCAGGGCACTCAGCGCATCATCATGGGCAGCCCCCTGCCCCACCGCCCCCCACCAGCAGCAAGGCCAA  3326

Query 2443  -------------------------  2442
                                     
Sbjct 3327  GCCCAGCGGCATCAGCACAGTTGTG  3351