Nucleotide Global Alignment

Description

• Query: TRCN0000481156
• Subject: XM_011241302.2
• Aligned Length: 3201
• Identities: 2155
• Gaps: 765

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ATGGCGAGCGCCGCCGAGCCCCCCGGCACGGCAGCCGAGTACCTGCAGGAGCTGACCCGGATCGTCGCGGCGCA  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  GCAGGAGCTGCTGGCGCAACGGCGGCGGCGCATCGAGGAGCTGGAGCGCCAAGTGGCGCGGCTGAGCCGTGAGA  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  ACGCCGGCCTGCTGGAGCGACACCGGCGACACCTGGCCGCGTGCGCTCGGCGCCCGGACCCGGGCCCTTCGCCA  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  CTGGGCGCCATCCCGGAGCTCGGCTGCCGCCGCGACAAGTCTGAAGAAGAAAGTTCTCGCAGCATCAGGAGCTC  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  CCTGGAAACCGGAAGCAGCCTCTCTACTGACCGATACAGTGTTGAGGGCGAGGCCCCCAGCAGCGAGACTGGCA  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  CATCGCTGGACAGCCCCTCAGCCTACCATCAGGGTCCCCTGGTACCTGGTTCCAGCCTGAGTCCAGACCACTAC  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  GAGCACACATCAGTGGGCGCCTATGGGCTGTACGCAGGGCCAGGACCACAACAGCGCACACGGAGGCCCCGGCT  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  GCAGCACTCGACCTCAGTCCTGCGCAAGCAGGCTGAGGAGGAGGCCATCAAGCGCTCTCGGTCACTCTCTGAGA  592

Query    1  -----------------------------------------ATGCTAGAACGAAAGTATGGGGGGCGCCTGGTA  33
                                                     |||||||||||.|||||||||||.|||||.||.
Sbjct  593  GCTATGAGCTCTCTTCAGATCTGCAAGACAAGCAGGTGGAAATGCTAGAACGCAAGTATGGGGGACGCCTCGTG  666

Query   34  ACCCGCCATGCGGCCCGCACCATCCAGACGGCGTTTCGCCAGTACCAGATGAACAAGAACTTCGAGCGCTTGCG  107
            |||||||||||.|||||||||||||||||||||||.|||||.||||||||||||||||||||.||||||.||||
Sbjct  667  ACCCGCCATGCAGCCCGCACCATCCAGACGGCGTTCCGCCAATACCAGATGAACAAGAACTTTGAGCGCCTGCG  740

Query  108  CAGCTCCATGTCAGAGAACCGCATGTCACGCCGGATTGTGCTGTCCAACATGAGGATGCAGTTCTCCTTTGAGG  181
            ||||||||||||.|||||||||||||||||.||.||||||||||||||||||||||||||||||||||||||||
Sbjct  741  CAGCTCCATGTCGGAGAACCGCATGTCACGTCGCATTGTGCTGTCCAACATGAGGATGCAGTTCTCCTTTGAGG  814

Query  182  GGCCTGAGAAAGTGCACAGCTCCTACTTCGAGGGGAAGCAGGTCTCAGTGACTAACGACGGCTCCCAGCTGGGA  255
            |.||.|||||.|||||||||||||||||.|||||.|||||||||||.||||||||.||.||||||||||||||.
Sbjct  815  GCCCCGAGAAGGTGCACAGCTCCTACTTTGAGGGAAAGCAGGTCTCTGTGACTAATGATGGCTCCCAGCTGGGG  888

Query  256  GCCCTGGTGTCCCCTGAGTGTGGTGACCTCAGCGAGCCCACCACCCTCAAGTCTCCGGCCCCCTCCAGTGACTT  329
            |||||||||.|..|.||.|||||.|||||.||.|| ||||  .|||||||||||||.|||||||||||||||||
Sbjct  889  GCCCTGGTGCCATCAGAATGTGGAGACCTTAGTGA-CCCA--GCCCTCAAGTCTCCAGCCCCCTCCAGTGACTT  959

Query  330  TGCGGACGCCATCACCGAGCTGGAGGACGCCTTCTCTAGGCAAGTGAAATCACTGGCCGAGTCCATCGACGATG  403
            |||.||.||||||||.||.||||||||.||||||||.|||||.||||||||.|||||.||.||||||||.||||
Sbjct  960  TGCAGATGCCATCACGGAACTGGAGGATGCCTTCTCCAGGCAGGTGAAATCCCTGGCTGAATCCATCGATGATG  1033

Query  404  CCCTCAACTGCCGCAGCCTGCACACTGAGGAGGCACCGGCCCTGGATGCGGCGCGGGCCCGGGACACCGAACCC  477
            |||||||.|||||||||||.||||.||||||||.|||.|||...||..||||.|||||.||||||||.||.|||
Sbjct 1034  CCCTCAATTGCCGCAGCCTACACAGTGAGGAGGTACCAGCCTCAGACACGGCCCGGGCTCGGGACACTGAGCCC  1107

Query  478  CAGACAGCCCTGCACGGCATGGACCACCGCAAACTGGACGAGATGACGGCCTCGTACAGTGATGTCACCCTGTA  551
            .|..|||..||.||.|||||||||||||||||||||||.||||||||.||||||||.||||||||.|||||.||
Sbjct 1108  AAACCAGGTCTACATGGCATGGACCACCGCAAACTGGATGAGATGACAGCCTCGTATAGTGATGTGACCCTCTA  1181

Query  552  CATCGATGAGGAGGAGCTGTCGCCCCCTCTGCCCCTCTCGCAGGCAGGGGACCGGCCGTCCAGCACCGAGTCGG  625
            |||.||||||||.||||||||.||.||.||.||.|||||.|||||.||.||.|||||.||||||||.|||||||
Sbjct 1182  CATTGATGAGGAAGAGCTGTCACCACCGCTTCCACTCTCACAGGCTGGCGATCGGCCCTCCAGCACAGAGTCGG  1255

Query  626  ACCTGCGGCTACGGGCTGGGGGCGCAGCCCCAGACTACTGGGCCCTGGCCCACAAAGAGGACAAGGCTGACACG  699
            ||||||||||..||.|||||||.|||||||..||||||||||||.|||||||||||||||||||||||||||||
Sbjct 1256  ACCTGCGGCTGAGGTCTGGGGGTGCAGCCCAGGACTACTGGGCCTTGGCCCACAAAGAGGACAAGGCTGACACG  1329

Query  700  GACACGAGCTGCCGGAGCACGCCGTCGCTGGAGCGGCAGGNGCAGCGGCTGCGGGTGGAGCATCTGCCGCTGCT  773
            |||||.||||||||.|||||.||.||.||||||||||..|.||..|||||||||||||||||.|||||.|||||
Sbjct 1330  GACACAAGCTGCCGAAGCACACCATCACTGGAGCGGCCAGAGCCACGGCTGCGGGTGGAGCACCTGCCCCTGCT  1403

Query  774  CACCATCGAGCCACCCAGCGACAGCTCTGTGGACCTTAGTGACCGCTCGGAGCGGGGGTCACTCAAGAGGCAGA  847
            .|||||.|||||||||||.||.|||||.|||||.||.|||||||||||.||.||..|.||||||||||||||||
Sbjct 1404  TACCATTGAGCCACCCAGTGATAGCTCCGTGGAACTCAGTGACCGCTCAGATCGCAGCTCACTCAAGAGGCAGA  1477

Query  848  GTGCTTACGAGCGCAGCCTTGGCGGGCAGCAGGGCAGTCCCAAGCATGGTCCCCACAGCGGCGCCCCCAAGAGC  921
            ||||.||.|||||||||||.||.||||||||||||||.|||||||||||.||||||.|.|||.|||||||..||
Sbjct 1478  GTGCCTATGAGCGCAGCCTCGGTGGGCAGCAGGGCAGCCCCAAGCATGGCCCCCACGGTGGCCCCCCCAAAGGC  1551

Query  922  CTCCCCCGGGAGGAGCCTGAGTTGCGGCCCCGGCCCCCCAGGCCCCTGGACAGCCACTTGGCCATCAATGGCTC  995
            ||||||.|||||||.|||||.||||||||.|||||||||||.||.||.||.||.|||.|.|||||||||||.||
Sbjct 1552  CTCCCCAGGGAGGAACCTGAATTGCGGCCTCGGCCCCCCAGACCTCTTGAGAGTCACCTAGCCATCAATGGTTC  1625

Query  996  AGCCAACCGGCAGAGCAAGTCTGAGTCGGACTACTCAGACGGTGACAATGACAGCATCAACAGCACGTCCAACT  1069
            ||||||||||||||||||.||||||||.|||||||||||.||.|||||||||||||||||||||||.|||||||
Sbjct 1626  AGCCAACCGGCAGAGCAAATCTGAGTCTGACTACTCAGATGGGGACAATGACAGCATCAACAGCACCTCCAACT  1699

Query 1070  CCAACGATACCATCAACTGCAGCTCCGAGTCATCGTCCCGTGACAGCCTGCGGGAGCAGACGCTCAGCAAGCAG  1143
            ||||.||.|||||.|||||||||||.|||||.||.||.||.||||||||||||||.|||||.||||||||||||
Sbjct 1700  CCAATGACACCATAAACTGCAGCTCTGAGTCCTCATCACGGGACAGCCTGCGGGAACAGACACTCAGCAAGCAG  1773

Query 1144  ACCTACCACAAGGAGGCCCGCAACAGCTGGGACTCGCCTGCCTTTAGCAACGATGTCATCCGCAAGAGGCACTA  1217
            ||.||||||||||||.|||||||||||||||||||.||.||.||.|||||||||||||||||.||||||||.||
Sbjct 1774  ACATACCACAAGGAGACCCGCAACAGCTGGGACTCTCCAGCTTTCAGCAACGATGTCATCCGTAAGAGGCATTA  1847

Query 1218  CCGCATCGGCCTGAACCTCTTCAACAAGAAGCCTGAGAAGGGAGTCCAGTACCTCATCGAGCGTGGCTTTGTGC  1291
            |||.||.|||||.||.||||||||||||||||||||||||||..|||||||.|||||.|||||.|||||.||||
Sbjct 1848  CCGAATTGGCCTAAATCTCTTCAACAAGAAGCCTGAGAAGGGCATCCAGTATCTCATTGAGCGCGGCTTCGTGC  1921

Query 1292  CCGACACGCCCGTCGGGGTGGCCCACTTCCTGCTGCAGCGCAAGGGCCTCAGCCGGCAGATGATCGGCGAGTTC  1365
            ||||||||||.||.||.||||||||||||||||||||||||||||||||||||||.|||||||||||.||||||
Sbjct 1922  CCGACACGCCAGTGGGAGTGGCCCACTTCCTGCTGCAGCGCAAGGGCCTCAGCCGCCAGATGATCGGTGAGTTC  1995

Query 1366  CTGGGCAACCGGCAGAAGCAGTTCAACCGTGACGTGCTCGACTGCGTCGTGGACGAGATGGACTTCTCTACCAT  1439
            |||||.||||||||||||||||||||||||||.|||||||||||.||.|||||||||||||||||||||.||||
Sbjct 1996  CTGGGAAACCGGCAGAAGCAGTTCAACCGTGATGTGCTCGACTGTGTTGTGGACGAGATGGACTTCTCTGCCAT  2069

Query 1440  GGAGCTGGATGAGGCCCTCAGGAAATTCCAGGCGCACATCCGTGTCCAAGGGGAGGCTCAGAAAGTGGAGCGGC  1513
            ||||||.|||||.||||||.||||.||||||||.||||||||.|||||||||||||||||||||||||||||||
Sbjct 2070  GGAGCTAGATGAAGCCCTCCGGAAGTTCCAGGCACACATCCGAGTCCAAGGGGAGGCTCAGAAAGTGGAGCGGC  2143

Query 1514  TCATAGAGGCGTTCAGCCAGCGCTACTGCATCTGCAACCCTGGGGTGGTGCGGCAATTCCGGAACCCAGACACC  1587
            ||||.|||||.|||||||||||.|||||..||||||||||.|||||||||||.||.||||||||||||||||||
Sbjct 2144  TCATCGAGGCATTCAGCCAGCGGTACTGTGTCTGCAACCCAGGGGTGGTGCGACAGTTCCGGAACCCAGACACC  2217

Query 1588  ATTTTCATCCTGGCCTTCGCCATCATCCTGCTGAACACCGACATGTACAGCCCCAATGTCAAGCCCGAGCGGAA  1661
            ||.|||||||||||||||||||||||||||||.|||||.||||||||||||||||||||||||||.|||||.||
Sbjct 2218  ATCTTCATCCTGGCCTTCGCCATCATCCTGCTCAACACAGACATGTACAGCCCCAATGTCAAGCCAGAGCGCAA  2291

Query 1662  AATGAAGCTAGAGGACTTCATCAAGAACCTCCGAGGTGTGGACGATGGTGAGGACATTCCCCGTGAGATGCTGA  1735
            |||||||||.||||||||..||||||||||||||||||||||.||.|||||.|||||||||||.||||.|||.|
Sbjct 2292  AATGAAGCTGGAGGACTTTGTCAAGAACCTCCGAGGTGTGGATGACGGTGAAGACATTCCCCGGGAGACGCTAA  2365

Query 1736  TGGGGATCTATGAACGGATCCGTAAGCGAGAGCTAAAGACCAATGAGGACCATGTGTCCCAGGTGCAGAAGGTG  1809
            |.|||||||||||.||.||||||||||||||.||.||||||||.||||||||.||||||||||||||||||||.
Sbjct 2366  TTGGGATCTATGAGCGAATCCGTAAGCGAGAACTGAAGACCAACGAGGACCACGTGTCCCAGGTGCAGAAGGTT  2439

Query 1810  GAGAAGCTCATTGTGGGGAAAAAGCCGATCGGATCCCTGCATCCCGGGCTCGGCTGTGTGCTCTCTCTGCCCCA  1883
            |||||||||||.|||||.||.||||||||.|||||||||||||..||.||.|||||||||||.|||||.|||||
Sbjct 2440  GAGAAGCTCATCGTGGGCAAGAAGCCGATTGGATCCCTGCATCATGGTCTTGGCTGTGTGCTGTCTCTTCCCCA  2513

Query 1884  CCGTCGGTTGGTCTGCTACTGCCGGCTCTTTGAGGTTCCAGACCCAAACAAGCCCCAGAAACTCGGACTACACC  1957
            .||.||..|.|||||||||||||||||.|||||.|||||.|||||.|||||.||||||||.||.||||||||||
Sbjct 2514  TCGACGACTAGTCTGCTACTGCCGGCTTTTTGAAGTTCCTGACCCCAACAAACCCCAGAAGCTGGGACTACACC  2587

Query 1958  AGCGAGAAATCTTCCTGTTCAACGACCTCCTGGTGGTCACCAAGATCTTCCAGAAGAAGAAGAACTCGGTGACG  2031
            |||||||.|||||||||||.||.||||||||||||||||||||||||||||||||||||||||||||||||||.
Sbjct 2588  AGCGAGAGATCTTCCTGTTTAATGACCTCCTGGTGGTCACCAAGATCTTCCAGAAGAAGAAGAACTCGGTGACA  2661

Query 2032  TACAGCTTCCGACAGTCCTTCTCCTTGTACGGCATGCAGGTCCTGCTCTTCGAGAACCAGTACTACCCCAATGG  2105
            |||||||||||.||||||||||||.|.||||||||||||||||||||||||||||||||||||||.||||||||
Sbjct 2662  TACAGCTTCCGGCAGTCCTTCTCCCTCTACGGCATGCAGGTCCTGCTCTTCGAGAACCAGTACTATCCCAATGG  2735

Query 2106  CATCCGGCTCACCTCGTCTGTCCCCGGAGCAGATATCAAAGTGTTAATAAACTTCAACGCCCCCAACCCTCAAG  2179
            |||||||||.||.||..|||||||.||||||||.|||||||||.||||||||||||||||.|||||.|||||.|
Sbjct 2736  CATCCGGCTGACGTCTGCTGTCCCTGGAGCAGACATCAAAGTGCTAATAAACTTCAACGCTCCCAATCCTCAGG  2809

Query 2180  ACCGGAAGAAATTCACCGATGACCTGCGGGAGTCCATTGCGGAAGTCCAAGAGATGGAGAAGCACAGGATAGAG  2253
            ||||||||||.|||||.||.||||||||||||||..|.||.|||||.||||||||||||||.|||.|.||||||
Sbjct 2810  ACCGGAAGAAGTTCACTGACGACCTGCGGGAGTCTGTCGCTGAAGTGCAAGAGATGGAGAAACACCGAATAGAG  2883

Query 2254  TCGGAGCTCGAGAAGCAGAAAGGCGTCGTGCGGCCCAGCATGTCCCAGTGCTCTAGCCTCAAAAAGGAGTCGGG  2327
            |||||||||||||||||||||||.||||||||||||||||||||.||||||||.|||||||||||||||||.||
Sbjct 2884  TCGGAGCTCGAGAAGCAGAAAGGTGTCGTGCGGCCCAGCATGTCACAGTGCTCCAGCCTCAAAAAGGAGTCAGG  2957

Query 2328  CAACGGAACACTGAGCCGGGCCTGCCTGGACGACAGCTATGCCAGCGGTGAGGGCCTCAAGCGCAGCGCCCTCA  2401
            ||||||.|||||||||.||||.||||||||.||||||||||||||.||.|||||||||||||||||||||||||
Sbjct 2958  CAACGGGACACTGAGCAGGGCTTGCCTGGATGACAGCTATGCCAGTGGCGAGGGCCTCAAGCGCAGCGCCCTCA  3031

Query 2402  GCAGCTCCCTGCGGGACCTCTCGGAAGCCGGGGT--------------CCATCAT-------------------  2442
            |||||||.|||.|.||||||||.|||||   |||              |||.||.                   
Sbjct 3032  GCAGCTCACTGAGAGACCTCTCAGAAGC---GGTTTCAGCCCTTCCAGCCACCACAGCCTCCAGTGCTGTGCTC  3102

Query 2443  --------------------------------------------------------------------------  2442
                                                                                      
Sbjct 3103  CTAAGCCTAGGACCCGAGGACTGCCTGTGGCCTCTGCCTGCGCGGAGGCCCTTTCAGATTGGAAGGAGTTGCCG  3176

Query 2443  -------------------  2442
                               
Sbjct 3177  CCTGACCGTGGGCTGCGTC  3195