Nucleotide Global Alignment

Description

Query:
TRCN0000481156
Subject:
XM_017321532.1
Aligned Length:
2980
Identities:
2159
Gaps:
542

Alignment

Query    1  ATGCTAGAACGAAAGTATGGGGGGCGCCTGGTAACCCGCCATGCGGCCCGCACCATCCAGACGGCGTTTCGCCA  74
            |||||||||||.|||||||||||.|||||.||.|||||||||||.|||||||||||||||||||||||.|||||
Sbjct    1  ATGCTAGAACGCAAGTATGGGGGACGCCTCGTGACCCGCCATGCAGCCCGCACCATCCAGACGGCGTTCCGCCA  74

Query   75  GTACCAGATGAACAAGAACTTCGAGCGCTTGCGCAGCTCCATGTCAGAGAACCGCATGTCACGCCGGATTGTGC  148
            .||||||||||||||||||||.||||||.||||||||||||||||.|||||||||||||||||.||.|||||||
Sbjct   75  ATACCAGATGAACAAGAACTTTGAGCGCCTGCGCAGCTCCATGTCGGAGAACCGCATGTCACGTCGCATTGTGC  148

Query  149  TGTCCAACATGAGGATGCAGTTCTCCTTTGAGGGGCCTGAGAAAGTGCACAGCTCCTACTTCGAGGGGAAGCAG  222
            ||||||||||||||||||||||||||||||||||.||.|||||.|||||||||||||||||.|||||.||||||
Sbjct  149  TGTCCAACATGAGGATGCAGTTCTCCTTTGAGGGCCCCGAGAAGGTGCACAGCTCCTACTTTGAGGGAAAGCAG  222

Query  223  GTCTCAGTGACTAACGACGGCTCCCAGCTGGGAGCCCTGGTGTCCCCTGAGTGTGGTGACCTCAGCGAGCCCAC  296
            |||||.||||||||.||.||||||||||||||.|||||||||.|..|.||.|||||.|||||.||.|| |||| 
Sbjct  223  GTCTCTGTGACTAATGATGGCTCCCAGCTGGGGGCCCTGGTGCCATCAGAATGTGGAGACCTTAGTGA-CCCA-  294

Query  297  CACCCTCAAGTCTCCGGCCCCCTCCAGTGACTTTGCGGACGCCATCACCGAGCTGGAGGACGCCTTCTCTAGGC  370
             .|||||||||||||.||||||||||||||||||||.||.||||||||.||.||||||||.||||||||.||||
Sbjct  295  -GCCCTCAAGTCTCCAGCCCCCTCCAGTGACTTTGCAGATGCCATCACGGAACTGGAGGATGCCTTCTCCAGGC  367

Query  371  AAGTGAAATCACTGGCCGAGTCCATCGACGATGCCCTCAACTGCCGCAGCCTGCACACTGAGGAGGCACCGGCC  444
            |.||||||||.|||||.||.||||||||.|||||||||||.|||||||||||.||||.||||||||.|||.|||
Sbjct  368  AGGTGAAATCCCTGGCTGAATCCATCGATGATGCCCTCAATTGCCGCAGCCTACACAGTGAGGAGGTACCAGCC  441

Query  445  CTGGATGCGGCGCGGGCCCGGGACACCGAACCCCAGACAGCCCTGCACGGCATGGACCACCGCAAACTGGACGA  518
            ...||..||||.|||||.||||||||.||.|||.|..|||..||.||.|||||||||||||||||||||||.||
Sbjct  442  TCAGACACGGCCCGGGCTCGGGACACTGAGCCCAAACCAGGTCTACATGGCATGGACCACCGCAAACTGGATGA  515

Query  519  GATGACGGCCTCGTACAGTGATGTCACCCTGTACATCGATGAGGAGGAGCTGTCGCCCCCTCTGCCCCTCTCGC  592
            ||||||.||||||||.||||||||.|||||.|||||.||||||||.||||||||.||.||.||.||.|||||.|
Sbjct  516  GATGACAGCCTCGTATAGTGATGTGACCCTCTACATTGATGAGGAAGAGCTGTCACCACCGCTTCCACTCTCAC  589

Query  593  AGGCAGGGGACCGGCCGTCCAGCACCGAGTCGGACCTGCGGCTACGGGCTGGGGGCGCAGCCCCAGACTACTGG  666
            ||||.||.||.|||||.||||||||.|||||||||||||||||..||.|||||||.|||||||..|||||||||
Sbjct  590  AGGCTGGCGATCGGCCCTCCAGCACAGAGTCGGACCTGCGGCTGAGGTCTGGGGGTGCAGCCCAGGACTACTGG  663

Query  667  GCCCTGGCCCACAAAGAGGACAAGGCTGACACGGACACGAGCTGCCGGAGCACGCCGTCGCTGGAGCGGCAGGN  740
            |||.||||||||||||||||||||||||||||||||||.||||||||.|||||.||.||.||||||||||..|.
Sbjct  664  GCCTTGGCCCACAAAGAGGACAAGGCTGACACGGACACAAGCTGCCGAAGCACACCATCACTGGAGCGGCCAGA  737

Query  741  GCAGCGGCTGCGGGTGGAGCATCTGCCGCTGCTCACCATCGAGCCACCCAGCGACAGCTCTGTGGACCTTAGTG  814
            ||..|||||||||||||||||.|||||.|||||.|||||.|||||||||||.||.|||||.|||||.||.||||
Sbjct  738  GCCACGGCTGCGGGTGGAGCACCTGCCCCTGCTTACCATTGAGCCACCCAGTGATAGCTCCGTGGAACTCAGTG  811

Query  815  ACCGCTCGGAGCGGGGGTCACTCAAGAGGCAGAGTGCTTACGAGCGCAGCCTTGGCGGGCAGCAGGGCAGTCCC  888
            |||||||.||.||..|.||||||||||||||||||||.||.|||||||||||.||.||||||||||||||.|||
Sbjct  812  ACCGCTCAGATCGCAGCTCACTCAAGAGGCAGAGTGCCTATGAGCGCAGCCTCGGTGGGCAGCAGGGCAGCCCC  885

Query  889  AAGCATGGTCCCCACAGCGGCGCCCCCAAGAGCCTCCCCCGGGAGGAGCCTGAGTTGCGGCCCCGGCCCCCCAG  962
            ||||||||.||||||.|.|||.|||||||..||||||||.|||||||.|||||.||||||||.|||||||||||
Sbjct  886  AAGCATGGCCCCCACGGTGGCCCCCCCAAAGGCCTCCCCAGGGAGGAACCTGAATTGCGGCCTCGGCCCCCCAG  959

Query  963  GCCCCTGGACAGCCACTTGGCCATCAATGGCTCAGCCAACCGGCAGAGCAAGTCTGAGTCGGACTACTCAGACG  1036
            .||.||.||.||.|||.|.|||||||||||.||||||||||||||||||||.||||||||.|||||||||||.|
Sbjct  960  ACCTCTTGAGAGTCACCTAGCCATCAATGGTTCAGCCAACCGGCAGAGCAAATCTGAGTCTGACTACTCAGATG  1033

Query 1037  GTGACAATGACAGCATCAACAGCACGTCCAACTCCAACGATACCATCAACTGCAGCTCCGAGTCATCGTCCCGT  1110
            |.|||||||||||||||||||||||.|||||||||||.||.|||||.|||||||||||.|||||.||.||.||.
Sbjct 1034  GGGACAATGACAGCATCAACAGCACCTCCAACTCCAATGACACCATAAACTGCAGCTCTGAGTCCTCATCACGG  1107

Query 1111  GACAGCCTGCGGGAGCAGACGCTCAGCAAGCAGACCTACCACAAGGAGGCCCGCAACAGCTGGGACTCGCCTGC  1184
            ||||||||||||||.|||||.||||||||||||||.||||||||||||.|||||||||||||||||||.||.||
Sbjct 1108  GACAGCCTGCGGGAACAGACACTCAGCAAGCAGACATACCACAAGGAGACCCGCAACAGCTGGGACTCTCCAGC  1181

Query 1185  CTTTAGCAACGATGTCATCCGCAAGAGGCACTACCGCATCGGCCTGAACCTCTTCAACAAGAAGCCTGAGAAGG  1258
            .||.|||||||||||||||||.||||||||.|||||.||.|||||.||.|||||||||||||||||||||||||
Sbjct 1182  TTTCAGCAACGATGTCATCCGTAAGAGGCATTACCGAATTGGCCTAAATCTCTTCAACAAGAAGCCTGAGAAGG  1255

Query 1259  GAGTCCAGTACCTCATCGAGCGTGGCTTTGTGCCCGACACGCCCGTCGGGGTGGCCCACTTCCTGCTGCAGCGC  1332
            |..|||||||.|||||.|||||.|||||.||||||||||||||.||.||.||||||||||||||||||||||||
Sbjct 1256  GCATCCAGTATCTCATTGAGCGCGGCTTCGTGCCCGACACGCCAGTGGGAGTGGCCCACTTCCTGCTGCAGCGC  1329

Query 1333  AAGGGCCTCAGCCGGCAGATGATCGGCGAGTTCCTGGGCAACCGGCAGAAGCAGTTCAACCGTGACGTGCTCGA  1406
            ||||||||||||||.|||||||||||.|||||||||||.||||||||||||||||||||||||||.||||||||
Sbjct 1330  AAGGGCCTCAGCCGCCAGATGATCGGTGAGTTCCTGGGAAACCGGCAGAAGCAGTTCAACCGTGATGTGCTCGA  1403

Query 1407  CTGCGTCGTGGACGAGATGGACTTCTCTACCATGGAGCTGGATGAGGCCCTCAGGAAATTCCAGGCGCACATCC  1480
            |||.||.|||||||||||||||||||||.||||||||||.|||||.||||||.||||.||||||||.|||||||
Sbjct 1404  CTGTGTTGTGGACGAGATGGACTTCTCTGCCATGGAGCTAGATGAAGCCCTCCGGAAGTTCCAGGCACACATCC  1477

Query 1481  GTGTCCAAGGGGAGGCTCAGAAAGTGGAGCGGCTCATAGAGGCGTTCAGCCAGCGCTACTGCATCTGCAACCCT  1554
            |.|||||||||||||||||||||||||||||||||||.|||||.|||||||||||.|||||..||||||||||.
Sbjct 1478  GAGTCCAAGGGGAGGCTCAGAAAGTGGAGCGGCTCATCGAGGCATTCAGCCAGCGGTACTGTGTCTGCAACCCA  1551

Query 1555  GGGGTGGTGCGGCAATTCCGGAACCCAGACACCATTTTCATCCTGGCCTTCGCCATCATCCTGCTGAACACCGA  1628
            |||||||||||.||.||||||||||||||||||||.|||||||||||||||||||||||||||||.|||||.||
Sbjct 1552  GGGGTGGTGCGACAGTTCCGGAACCCAGACACCATCTTCATCCTGGCCTTCGCCATCATCCTGCTCAACACAGA  1625

Query 1629  CATGTACAGCCCCAATGTCAAGCCCGAGCGGAAAATGAAGCTAGAGGACTTCATCAAGAACCTCCGAGGTGTGG  1702
            ||||||||||||||||||||||||.|||||.|||||||||||.||||||||..|||||||||||||||||||||
Sbjct 1626  CATGTACAGCCCCAATGTCAAGCCAGAGCGCAAAATGAAGCTGGAGGACTTTGTCAAGAACCTCCGAGGTGTGG  1699

Query 1703  ACGATGGTGAGGACATTCCCCGTGAGATGCTGATGGGGATCTATGAACGGATCCGTAAGCGAGAGCTAAAGACC  1776
            |.||.|||||.|||||||||||.||||.|||.||.|||||||||||.||.||||||||||||||.||.||||||
Sbjct 1700  ATGACGGTGAAGACATTCCCCGGGAGACGCTAATTGGGATCTATGAGCGAATCCGTAAGCGAGAACTGAAGACC  1773

Query 1777  AATGAGGACCATGTGTCCCAGGTGCAGAAGGTGGAGAAGCTCATTGTGGGGAAAAAGCCGATCGGATCCCTGCA  1850
            ||.||||||||.||||||||||||||||||||.|||||||||||.|||||.||.||||||||.|||||||||||
Sbjct 1774  AACGAGGACCACGTGTCCCAGGTGCAGAAGGTTGAGAAGCTCATCGTGGGCAAGAAGCCGATTGGATCCCTGCA  1847

Query 1851  TCCCGGGCTCGGCTGTGTGCTCTCTCTGCCCCACCGTCGGTTGGTCTGCTACTGCCGGCTCTTTGAGGTTCCAG  1924
            ||..||.||.|||||||||||.|||||.|||||.||.||..|.|||||||||||||||||.|||||.|||||.|
Sbjct 1848  TCATGGTCTTGGCTGTGTGCTGTCTCTTCCCCATCGACGACTAGTCTGCTACTGCCGGCTTTTTGAAGTTCCTG  1921

Query 1925  ACCCAAACAAGCCCCAGAAACTCGGACTACACCAGCGAGAAATCTTCCTGTTCAACGACCTCCTGGTGGTCACC  1998
            ||||.|||||.||||||||.||.|||||||||||||||||.|||||||||||.||.||||||||||||||||||
Sbjct 1922  ACCCCAACAAACCCCAGAAGCTGGGACTACACCAGCGAGAGATCTTCCTGTTTAATGACCTCCTGGTGGTCACC  1995

Query 1999  AAGATCTTCCAGAAGAAGAAGAACTCGGTGACGTACAGCTTCCGACAGTCCTTCTCCTTGTACGGCATGCAGGT  2072
            ||||||||||||||||||||||||||||||||.|||||||||||.||||||||||||.|.||||||||||||||
Sbjct 1996  AAGATCTTCCAGAAGAAGAAGAACTCGGTGACATACAGCTTCCGGCAGTCCTTCTCCCTCTACGGCATGCAGGT  2069

Query 2073  CCTGCTCTTCGAGAACCAGTACTACCCCAATGGCATCCGGCTCACCTCGTCTGTCCCCGGAGCAGATATCAAAG  2146
            ||||||||||||||||||||||||.|||||||||||||||||.||.||..|||||||.||||||||.|||||||
Sbjct 2070  CCTGCTCTTCGAGAACCAGTACTATCCCAATGGCATCCGGCTGACGTCTGCTGTCCCTGGAGCAGACATCAAAG  2143

Query 2147  TGTTAATAAACTTCAACGCCCCCAACCCTCAAGACCGGAAGAAATTCACCGATGACCTGCGGGAGTCCATTGCG  2220
            ||.||||||||||||||||.|||||.|||||.|||||||||||.|||||.||.||||||||||||||..|.||.
Sbjct 2144  TGCTAATAAACTTCAACGCTCCCAATCCTCAGGACCGGAAGAAGTTCACTGACGACCTGCGGGAGTCTGTCGCT  2217

Query 2221  GAAGTCCAAGAGATGGAGAAGCACAGGATAGAGTCGGAGCTCGAGAAGCAGAAAGGCGTCGTGCGGCCCAGCAT  2294
            |||||.||||||||||||||.|||.|.|||||||||||||||||||||||||||||.|||||||||||||||||
Sbjct 2218  GAAGTGCAAGAGATGGAGAAACACCGAATAGAGTCGGAGCTCGAGAAGCAGAAAGGTGTCGTGCGGCCCAGCAT  2291

Query 2295  GTCCCAGTGCTCTAGCCTCAAAAAGGAGTCGGGCAACGGAACACTGAGCCGGGCCTGCCTGGACGACAGCTATG  2368
            |||.||||||||.|||||||||||||||||.||||||||.|||||||||.||||.||||||||.||||||||||
Sbjct 2292  GTCACAGTGCTCCAGCCTCAAAAAGGAGTCAGGCAACGGGACACTGAGCAGGGCTTGCCTGGATGACAGCTATG  2365

Query 2369  CCAGCGGTGAGGGCCTCAAGCGCAGCGCCCTCAGCAGCTCCCTGCGGGACCTCTCGGAAGCCGGGG--------  2434
            ||||.||.||||||||||||||||||||||||||||||||.|||.|.||||||||.|||| |||||        
Sbjct 2366  CCAGTGGCGAGGGCCTCAAGCGCAGCGCCCTCAGCAGCTCACTGAGAGACCTCTCAGAAG-CGGGGAAGCGAGG  2438

Query 2435  -------------------------------------------TCCATCAT-----------------------  2442
                                                       ||||||||                       
Sbjct 2439  GCGTCGCAGCAGTGCGGGATCGCTAGAGAGCAATGTGGAAGGCTCCATCATTAGCAGTCCTCACATGCGCCGGA  2512

Query 2443  --------------------------------------------------------------------------  2442
                                                                                      
Sbjct 2513  GAGCGACCTCAACACGAGAGTGCCCATCTCGCCCCCCCCAGCCCGTGCCTAACTCCTCCTCTCTCCTGGGTTCT  2586

Query 2443  --------------------------------------------------------------------------  2442
                                                                                      
Sbjct 2587  TTGTTTGGGAGCAGGAGAGGGAAGCCCCCTCCCCAGGCCCACCCACCCTCAGCCCCTCCCCCAGCACCCCCTCA  2660

Query 2443  --------------------------------------------------------------------------  2442
                                                                                      
Sbjct 2661  CGCCCATCACCCTGGGCCCTCAGAAGGCCCACTGCATGGACATCATGCACAGTACTGCCATGCACAGCAGAATC  2734

Query 2443  --------------------------------------------------------------------------  2442
                                                                                      
Sbjct 2735  CTCCGCCCTATCACCACCACCACCACTACCACCCACCCCCCCACCTGCAGCACACCCACCAGTACCACCATGGC  2808

Query 2443  --------------------------------------------------------------------------  2442
                                                                                      
Sbjct 2809  CCACACGGCGGGCACCCCCCGTATGGGGCCCATGCACACAGCCACCCGCCTCTGCCCACAGCTCACCCTGGTCA  2882

Query 2443  --------------------------------------------------------------------------  2442
                                                                                      
Sbjct 2883  TGCAGGGCACTCAGCGCATCATCATGGGCAGCCCCCTGCCCCACCGCCCCCCACCAGCAGCAAGGCCAAGCCCA  2956

Query 2443  --------------------  2442
                                
Sbjct 2957  GCGGCATCAGCACAGTTGTG  2976

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.