Nucleotide Global Alignment

Description

• Query: TRCN0000481604
• Subject: NM_001365700.2
• Aligned Length: 3489
• Identities: 2279
• Gaps: 1109

Alignment

Query    1  ATGGCGACCTCCGAGAGGGGCTCTCCTGAGGACCAGAGCTGCCTCTCTCCTGAGAGGCTTGGGCAGATCCCGAA  74
            |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct    1  ATGGCGACCTCCGAGA-GGGCTCTCCTGAGGACCAGAGCTGCCTCTCTCCTGAGAGGCTTGGGCAGATCCCGAA  73

Query   75  CTGGAGCCCGATCGTTACAGTTTCGCGCAGAAAAAGAGCGTCAGCCTTGCTGGTCTTTTCCCATGGGGCAGAAG  148
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct   74  CTGGAGCCCGATCGTTACAGTTTCGCGCAGAAAAAGAGCGTCAGCCTTGCTGGTCTTTTCCCATGGGGCAGAAG  147

Query  149  ACGAAAGGCAGCTCTAACATAGCCTCCTCCTACCTGCTCCAGCAGCTCATGCACCGCTATCAGGAGCTGGACTC  222
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  148  ACGAAAGGCAGCTCTAACATAGCCTCCTCCTACCTGCTCCAGCAGCTCATGCACCGCTATCAGGAGCTGGACTC  221

Query  223  GGACGGAGATGAGGACCAGGGCGAGGGCGAGGCGGGATCCGAGGAGTCCTCAGAGTCCGAAATGCTGAATTTGG  296
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  222  GGACGGAGATGAGGACCAGGGCGAGGGCGAGGCGGGATCCGAGGAGTCCTCAGAGTCCGAAATGCTGAATTTGG  295

Query  297  AGGAGGAATTTGATGGGGTCCTGAGAGAGGAGGCTGTGGCCAAAGCACTCCATCACTTGGGGCGCTCAGGCTCT  370
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  296  AGGAGGAATTTGATGGGGTCCTGAGAGAGGAGGCTGTGGCCAAAGCACTCCATCACTTGGGGCGCTCAGGCTCT  369

Query  371  GGGACTGAGCAAGTCTACCTCAATCTAACTTTATCAGGTTGTAATTTAATTGATGTTAGCATTCTCTGTGGATA  444
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  370  GGGACTGAGCAAGTCTACCTCAATCTAACTTTATCAGGTTGTAATTTAATTGATGTTAGCATTCTCTGTGGATA  443

Query  445  TGTTCATCTACAGAAGTTGGATCTTTCAGCGAATAAAATTGAAGATTTATCTTGTGTGAGTTGTATGCCTTATC  518
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  444  TGTTCATCTACAGAAGTTGGATCTTTCAGCGAATAAAATTGAAGATTTATCTTGTGTGAGTTGTATGCCTTATC  517

Query  519  TCCTAGAACTTAATGCTTCTCAAAATAATTTGACTACGTTCTTCAATTTCAAGCCACCCAAAAACCTCAAGAAG  592
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  518  TCCTAGAACTTAATGCTTCTCAAAATAATTTGACTACGTTCTTCAATTTCAAGCCACCCAAAAACCTCAAGAAG  591

Query  593  GCGGATTTTTCCCACAACCAAATTTCTGAAATTTGTGATTTGTCAGCGTATCATGCTCTCACTAAACTAATTTT  666
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  592  GCGGATTTTTCCCACAACCAAATTTCTGAAATTTGTGATTTGTCAGCGTATCATGCTCTCACTAAACTAATTTT  665

Query  667  GGATGGCAATGAGATAGAAGAAATCAGTGGACTAGAGATGTGCAACAACCTAATTCACCTTAGTTTGGCCAACA  740
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  666  GGATGGCAATGAGATAGAAGAAATCAGTGGACTAGAGATGTGCAACAACCTAATTCACCTTAGTTTGGCCAACA  739

Query  741  ATAAGATCACGACAATTAATGGCTTAAACAAGTTACCAATCAAAATACTTTGTCTGAGCAATAACCAGATTGAG  814
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  740  ATAAGATCACGACAATTAATGGCTTAAACAAGTTACCAATCAAAATACTTTGTCTGAGCAATAACCAGATTGAG  813

Query  815  ATGATCACAGGTTTGGAGGATCTGAAAGCCCTGCAGAACCTGGATCTGTCCCACAATCAGATAAGCAGCCTCCA  888
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  814  ATGATCACAGGTTTGGAGGATCTGAAAGCCCTGCAGAACCTGGATCTGTCCCACAATCAGATAAGCAGCCTCCA  887

Query  889  AGGCTTAGAGAATCATGACCTCCTGGAAGTGATCAACCTGGAGGATAATAAGATTGCTGAGCTGAGAGAAATAG  962
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  888  AGGCTTAGAGAATCATGACCTCCTGGAAGTGATCAACCTGGAGGATAATAAGATTGCTGAGCTGAGAGAAATAG  961

Query  963  AATACATTAAAAATTTACCCATCCTTCGAGTTCTCAATCTTCTAGAAAATCCAATTCAGGAAAAGTCTGAATAT  1036
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  962  AATACATTAAAAATTTACCCATCCTTCGAGTTCTCAATCTTCTAGAAAATCCAATTCAGGAAAAGTCTGAATAT  1035

Query 1037  TGGTTCTTCGTAATTTTTATGCTTCTGCGATTAACAGAATTAGATCAGAAGAAGATTAAAGTGGAAGAAAAGGT  1110
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1036  TGGTTCTTCGTAATTTTTATGCTTCTGCGATTAACAGAATTAGATCAGAAGAAGATTAAAGTGGAAGAAAAGGT  1109

Query 1111  TTCAGCAGTGAATAAATATGATCCTCCCCCTGAAGTGGTTGCAGCTCAAGACCACCTGACCCATGTTGTCAACA  1184
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1110  TTCAGCAGTGAATAAATATGATCCTCCCCCTGAAGTGGTTGCAGCTCAAGACCACCTGACCCATGTTGTCAACA  1183

Query 1185  GCGTGATGCAGCCGCAGAGGATCTTTGACAGCACTCTTCCCAGCCTGGATGCTCCTTATCCCATGCTGATACTA  1258
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1184  GCGTGATGCAGCCGCAGAGGATCTTTGACAGCACTCTTCCCAGCCTGGATGCTCCTTATCCCATGCTGATACTA  1257

Query 1259  GCTGGTCCTGAAGCTTGTGGGAAACGAGAGCTTGCCCATCGCCTCTGCAGACAGTTTAGCACTTACTTCAGATA  1332
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1258  GCTGGTCCTGAAGCTTGTGGGAAACGAGAGCTTGCCCATCGCCTCTGCAGACAGTTTAGCACTTACTTCAGATA  1331

Query 1333  TGGGGCCTGTCATACCACAAGACCACCTTACTTTGGAGAAGGGGATCGAGTTGATTATCATTTTATCTCTCAAG  1406
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1332  TGGGGCCTGTCATACCACAAGACCACCTTACTTTGGAGAAGGGGATCGAGTTGATTATCATTTTATCTCTCAAG  1405

Query 1407  ACGTTTTTGATGAAATGGTGAACATGGGGAAATTCATTCTAACATTTAGTTATGGTAATCACAAGTATGGATTA  1480
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1406  ACGTTTTTGATGAAATGGTGAACATGGGGAAATTCATTCTAACATTTAGTTATGGTAATCACAAGTATGGATTA  1479

Query 1481  AATAGGGACACCGTAGAAGGTATCGCAAGAGATGGTTTGGCAAGCTGTATTCATATGGAAATAGAAGGTGTAAG  1554
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1480  AATAGGGACACCGTAGAAGGTATCGCAAGAGATGGTTTGGCAAGCTGTATTCATATGGAAATAGAAGGTGTAAG  1553

Query 1555  AAGTTTGAAATATTCCTATTTTGAGCCTCGTTATATCCTGGTGGTGCCCATGAACAAGGAAAAATATGAGGGAT  1628
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1554  AAGTTTGAAATATTCCTATTTTGAGCCTCGTTATATCCTGGTGGTGCCCATGAACAAGGAAAAATATGAGGGAT  1627

Query 1629  ATTTGCGGAGAAAAGGATTATTCAGTCGTGCAGAAATTGAATTTGCTGTCTCCAGAGTGGACCTTTATATTAAA  1702
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1628  ATTTGCGGAGAAAAGGATTATTCAGTCGTGCAGAAATTGAATTTGCTGTCTCCAGAGTGGACCTTTATATTAAA  1701

Query 1703  ATTAATCAGAATTTTCCGGGATATTTTGATGAGGTAATCAATGCAGATGATCTGGATGTTGCCTACCAAAAACT  1776
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1702  ATTAATCAGAATTTTCCGGGATATTTTGATGAGGTAATCAATGCAGATGATCTGGATGTTGCCTACCAAAAACT  1775

Query 1777  GAGTCAGCTCATTAGAGAATACCTTGGATTGACTGAGGAACTTGCCAAGAGTTTGGCTACAACTGCAG------  1844
            |||||||||||||||||||||||||||||||||||||||||.||||||||||||||||||||||||||      
Sbjct 1776  GAGTCAGCTCATTAGAGAATACCTTGGATTGACTGAGGAACCTGCCAAGAGTTTGGCTACAACTGCAGCAGGAG  1849

Query 1845  -----------ATGTTAAGA---------------CATCCCACCT------------------------GAAAC  1868
                       |.|  ||||               ||.|.|||||                        |||| 
Sbjct 1850  CTCCCGCTAGCAAG--AAGACTGTCTCTGGGGTGCCAGCACACCTGGTTCCATCTCCCAGGTGCTTGGCGAAA-  1920

Query 1869  CTG-AAGC------------------GCATC---CTACAAAGTATATT----------TCTTCGAATAT----G  1906
            ||| ||||                  |||||   ||..||.|.|.|||          .|.|.|||.||    |
Sbjct 1921  CTGCAAGCAGATGGCCAGATGACAGAGCATCTCTCTGGAATGCAAATTCATGCCAAGGACCTAGAAAATCAGAG  1994

Query 1907  GGTGATTTCCT-----------------------------------------------GCATTCTACAGACAG-  1932
            .|| |..||||                                               ||.||||.|.||||| 
Sbjct 1995  CGT-AACTCCTGCCCAGAACCAAGAGCTGGCTCAGGATGGAGAAACCCATCAAAAAGAGCTTTCTCCTGACAGC  2067

Query 1933  ---------------------AAACTACCTCATTAAAT----TTTGGGCCAAACTT--TCAG-----CCAAAA-  1973
                                 .||| ||||||.|..||    ..||||    .|||  ||||     |||..| 
Sbjct 2068  CATCTCAATCCTGAGCTCCCTCAAC-ACCTCAGTTCATCAGCACTGGG----TCTTCCTCAGCAGGCCCAGGAC  2136

Query 1974  --------AAACACCAGCGGAA-----------------AGAGATT---CTATACACAGACAG-CAC-GAGGCA  2017
                    |||| |||.|||||                 |||..||   ||| |.|||.|.|| ||| |||.||
Sbjct 2137  CTATCCCTAAAC-CCAACGGAAGAGGATGTCCAACAATCAGATCTTCCCCTA-AAACAAATAGCCACTGAGACA  2208

Query 2018  G----CCCGGCAAGCTCTAA-----------TGGGAAGGATACGCCCTGATCACAC-----------ACTCCTA  2065
            |    |||.|  ||.|..||           ||||.||   .|.|||  |||||.|           .|||||.
Sbjct 2209  GATGTCCCTG--AGGTGGAAGCCAGTGAGGTTGGGCAG---TCTCCC--ATCACCCCGACCCTGGTGCCTCCTG  2275

Query 2066  T------TTC------------------------------------AAAGGGGTC----CAGTACCAG------  2087
            |      |||                                    .||||.|||    .||..||||      
Sbjct 2276  TGCACCCTTCCCCTCCCTCGTCCCGCAGCCCTCAGCCAGGCCAGGACAAGGAGTCAGGGGAGGCCCAGGTAACC  2349

Query 2088  ----------CACCTCTCACCAGTGGTCTACACTATTATACA-------------ACT-----------TTAGA  2127
                      |.|||||        ||||..||  .|.||||             |||           |.|| 
Sbjct 2350  CCTACTGGCCCTCCTCT--------GTCTGAAC--CTCTACAGGGACCTGGCCCCACTCCCCTCAGCCCTCAG-  2412

Query 2128  AGAACTCTGGA-----AAAGTTTTGA-TCTTTGTGAAGACTATTTTAAACCTCCA--------TTTGGACCAT-  2186
            ||||.||.|||     |||   |||| ||       ||||      ||||.||||        ||...||||| 
Sbjct 2413  AGAATTCAGGATGAGGAAA---TTGAGTC-------AGAC------AAACTTCCACCCAGCAGTTCCCACCATG  2470

Query 2187  ATCCT-GAAAAGAGTGGGAAGGATTC------------CTTGGTTTCCATGAAA--TGTT--CATTGTTTC---  2240
            ||||| .||||          |||||            |||||  |.|| ||||  ||.|  |   |.|||   
Sbjct 2471  ATCCTCCAAAA----------GATTCTTCCCACACTGACTTGG--TGCA-GAAACTTGCTGGC---GATTCTCA  2528

Query 2241  ---GGTTCTG----------------------------TCCGTGGTCA-----------AAAGAATTGC-----  2267
               .|.||||                            |||| .||||           ..||||.|||     
Sbjct 2529  GCAAGCTCTGAAGGAGGAAACCTCCAAACCGGAAGCCATCCG-AGTCAGTATCCCTCACCCAGAACTGCCACAT  2601

Query 2268  --------CTT--------------TCCAGCCTCCGG--AGGGGAG---------CATTTCTTCACACCTAGGA  2308
                    |||              ..|||||.|.||  |||||||         |.||.|||    |||||.|
Sbjct 2602  CCCCAAGACTTAGCAACAGATACCAAGCAGCCCCAGGCCAGGGGAGCCCCGGGGACCTTGCTT----CCTAGAA  2671

Query 2309  -------------------------------TCAGGAG-----------CCAGTGACAGTGAGACCGAAGAGAC  2340
                                           |||||.|           ||||.| ||| |||.||   .|.||
Sbjct 2672  GCCGGCTGGCTCCCACTCGGCTGCCCCAGCCTCAGGTGCTGGCTCCCCTCCAGAG-CAG-GAGGCC---CACAC  2740

Query 2341  CCGGAAAGCACTACCTAT--------------------------ACAATCATTTTCACATGAAA--AAGA--GT  2384
            ||  ||   ||| |||||                          ||||.|    ||.|||.|||  |.||  ||
Sbjct 2741  CC--AA---ACT-CCTATCGCCCAGCAGGGAAGAGGCTTTAGGAACAACC----TCCCATCAAACCATGACGGT  2804

Query 2385  CT------------CACCAAC-------ACAGACA-----ACACTCGGTCCCAGTCATCAGTCGCCCAGGTTCC  2434
            ||            |||||||       .||||||     |.|||...||||| |||      ||||    |||
Sbjct 2805  CTCTCCCAGGCTTCCACCAACCCGGGAAGCAGACACCAGTAAACTTCCTCCCA-TCA------GCCC----TCC  2867

Query 2435  -AACGTCAAACCCACCCTCCC---TCCAATCCCTCAGG--GCC-----------GCAGG---------------  2476
             .|| |||||.|||||  .||   ||..|.|||.||||  |||           |||.|               
Sbjct 2868  GCAC-TCAAAACCACC--ACCAAATCTGAGCCCCCAGGCAGCCCACAGTCTTCAGCAAGTCCAGGAAGAGAAGG  2938

Query 2477  --------------------------------------------------------------------------  2476
                                                                                      
Sbjct 2939  TCAGTGAGGTGAAACTCCCTCTTATCAGTCCCCCCAGCCAGGAGCAAGCAGAACCTCGCATCCTCAGTCCCGCC  3012

Query 2477  --------------------------------------------------------------------------  2476
                                                                                      
Sbjct 3013  CAGGAGGAGGCGGCTCAGAAAGTGAGGCTCCCTCGCATTCCTGCTCCTCTTCCGGAGCCAGGGCTGCCCCAGAA  3086

Query 2477  --------------------------------------------------------------------------  2476
                                                                                      
Sbjct 3087  CTCGGGGACTCAGCCTGATCCAAGGCCTGCAAAGGAAAGGAAAGCTCCCCAAGCAGGCAGCTCCTCCAGGAGGA  3160

Query 2477  --------------------------------------------------------------------------  2476
                                                                                      
Sbjct 3161  AGATTCCAGACATGCGGGCCTCACCCCACAACCAGGGGCCACTTCAGCAGACAGGGGCTAGGGAAAAAAAGCTC  3234

Query 2477  --------------------------------------------------------------------------  2476
                                                                                      
Sbjct 3235  CCCAACCAGAAAGGGACGGCTAGAGGACTGGCACCTCTGGAAGAGGCACCACCTGGGAACCACCAGCCAGCCTT  3308

Query 2477  --------------------------------------------------------------------------  2476
                                                                                      
Sbjct 3309  GCAGCTAGAACCCCACGATCAGCCAGCTCCCACCATGGTGCCCGACGATCCCAACCCCAGCCCTCCTCTTGTTT  3382

Query 2477  -----------  2476
                       
Sbjct 3383  CTTGTCTAAGC  3393